Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
12:54:38 (1586191): wrapper (7.7.26015): starting
12:54:38 (1586191): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 12:54:38] Arguments: --nthreads 4
[2025-06-04 12:54:38] Threads: 4
[2025-06-04 12:54:38] Checking for CVMFS
[2025-06-04 12:54:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 12:54:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 12:54:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 12:54:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 12:54:39] 2.12.7.0 1403933 131 63464 146777 0 56 3820402 4096001 2766 130560 0 507268 99.996 75375 6773 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-04 12:54:39] CVMFS is ok
[2025-06-04 12:54:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 12:54:39] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-04 12:54:39] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-04 12:54:39] Further information can be found at the LHC@home message board.
[2025-06-04 12:54:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 12:54:39] Checking for apptainer binary...
[2025-06-04 12:54:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 12:54:39] Running /usr/bin/apptainer --version
[2025-06-04 12:54:39] apptainer version 1.2.3
[2025-06-04 12:54:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 12:54:39] Ryzen-7-7700-Zen4-Deb12
[2025-06-04 12:54:39] apptainer works
[2025-06-04 12:54:39] Set ATHENA_PROC_NUMBER=4
[2025-06-04 12:54:39] Set ATHENA_CORE_NUMBER=4
[2025-06-04 12:54:39] Starting ATLAS job with PandaID=6678287179
[2025-06-04 12:54:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 13:59:11]  *** The last 200 lines of the pilot log: ***
[2025-06-04 13:59:11]  guid=92dfe6b5-d215-48ea-8e21-a10beb28d26f
[2025-06-04 13:59:11]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 13:59:11]  is_altstaged=None
[2025-06-04 13:59:11]  is_tar=False
[2025-06-04 13:59:11]  lfn=log.45006595._051826.job.log.tgz.1
[2025-06-04 13:59:11]  mtime=0
[2025-06-04 13:59:11]  protocol_id=None
[2025-06-04 13:59:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 13:59:11]  replicas=None
[2025-06-04 13:59:11]  scope=mc23_13p6TeV
[2025-06-04 13:59:11]  status=None
[2025-06-04 13:59:11]  status_code=0
[2025-06-04 13:59:11]  storage_token=
[2025-06-04 13:59:11]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-6678287179/log.45006595._051826.job.log.tgz.1
[2025-06-04 13:59:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/39/log.45006595._051826.job.log.tgz.1
[2025-06-04 13:59:11]  workdir=None
[2025-06-04 13:59:11] ]
[2025-06-04 13:59:11] 2025-06-04 11:58:49,073 | INFO     | transferring file log.45006595._051826.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-6678287179/log.45006595._051826.job.log.tgz.1 to /var/lib/boinc
[2025-06-04 13:59:11] 2025-06-04 11:58:49,073 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6678287179/log.45006595._051826.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.450065
[2025-06-04 13:59:11] 2025-06-04 11:58:49,101 | INFO     | adding to output.list: log.45006595._051826.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/39/log.45006595._051826.job.log.tg
[2025-06-04 13:59:11] 2025-06-04 11:58:49,102 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 13:59:11] 2025-06-04 11:58:49,102 | INFO     | summary of transferred files:
[2025-06-04 13:59:11] 2025-06-04 11:58:49,102 | INFO     |  -- lfn=log.45006595._051826.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 13:59:11] 2025-06-04 11:58:49,102 | INFO     | stage-out finished correctly
[2025-06-04 13:59:11] 2025-06-04 11:58:50,122 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 13:59:11] 2025-06-04 11:58:50,290 | INFO     | job 6678287179 has state=finished
[2025-06-04 13:59:11] 2025-06-04 11:58:50,290 | INFO     | preparing for final server update for job 6678287179 in state='finished'
[2025-06-04 13:59:11] 2025-06-04 11:58:50,290 | INFO     | this job has now completed (state=finished)
[2025-06-04 13:59:11] 2025-06-04 11:58:50,290 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 13:59:11] 2025-06-04 11:58:50,291 | INFO     | log transfer has been attempted: DONE
[2025-06-04 13:59:11] 2025-06-04 11:58:50,291 | INFO     | job 6678287179 has finished - writing final server update
[2025-06-04 13:59:11] 2025-06-04 11:58:50,291 | INFO     | total number of processed events: 400 (read)
[2025-06-04 13:59:11] 2025-06-04 11:58:50,292 | INFO     | executing command: lscpu
[2025-06-04 13:59:11] 2025-06-04 11:58:50,306 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 13:59:11] 2025-06-04 11:58:51,838 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 13:59:11] 2025-06-04 11:58:51,838 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6678287179/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 13:59:11] 2025-06-04 11:58:51,839 | INFO     | extracted standard info from prmon json
[2025-06-04 13:59:11] 2025-06-04 11:58:51,839 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 13:59:11] 2025-06-04 11:58:51,839 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 13:59:11] 2025-06-04 11:58:51,839 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 13:59:11] 2025-06-04 11:58:51,839 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 13:59:11] 2025-06-04 11:58:51,840 | INFO     | fitting pss+swap vs Time
[2025-06-04 13:59:11] 2025-06-04 11:58:51,840 | INFO     | sum of square deviations: 54438230.0
[2025-06-04 13:59:11] 2025-06-04 11:58:51,840 | INFO     | sum of deviations: -996262644.5
[2025-06-04 13:59:11] 2025-06-04 11:58:51,840 | INFO     | mean x: 1749036483.5
[2025-06-04 13:59:11] 2025-06-04 11:58:51,840 | INFO     | mean y: 2348496.8035714286
[2025-06-04 13:59:11] 2025-06-04 11:58:51,840 | INFO     | -- intersect: 32011098824.995552
[2025-06-04 13:59:11] 2025-06-04 11:58:51,840 | INFO     | intersect: 32011098824.995552
[2025-06-04 13:59:11] 2025-06-04 11:58:51,840 | INFO     | chi2: 0.008799199765073033
[2025-06-04 13:59:11] 2025-06-04 11:58:51,840 | INFO     | -- intersect: 32011098824.995552
[2025-06-04 13:59:11] 2025-06-04 11:58:51,840 | INFO     | current memory leak: -18.30 B/s (using 56 data points, chi2=0.01)
[2025-06-04 13:59:11] 2025-06-04 11:58:51,841 | INFO     | ..............................
[2025-06-04 13:59:11] 2025-06-04 11:58:51,841 | INFO     | . Timing measurements:
[2025-06-04 13:59:11] 2025-06-04 11:58:51,841 | INFO     | . get job = 0 s
[2025-06-04 13:59:11] 2025-06-04 11:58:51,841 | INFO     | . initial setup = 1 s
[2025-06-04 13:59:11] 2025-06-04 11:58:51,841 | INFO     | . payload setup = 2 s
[2025-06-04 13:59:11] 2025-06-04 11:58:51,841 | INFO     | . stage-in = 0 s
[2025-06-04 13:59:11] 2025-06-04 11:58:51,841 | INFO     | . payload execution = 3826 s
[2025-06-04 13:59:11] 2025-06-04 11:58:51,841 | INFO     | . stage-out = 0 s
[2025-06-04 13:59:11] 2025-06-04 11:58:51,841 | INFO     | . log creation = 0 s
[2025-06-04 13:59:11] 2025-06-04 11:58:51,841 | INFO     | ..............................
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | 
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | job summary report
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | --------------------------------------------------
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | PanDA job id: 6678287179
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | task id: 45006595
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | errors: (none)
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | pilot state: finished 
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | transexitcode: 0
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | exeerrorcode: 0
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | exeerrordiag: 
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | exitcode: 0
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | exitmsg: OK
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | cpuconsumptiontime: 14697 s
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | nevents: 400
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | neventsw: 0
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | pid: 1596375
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | pgrp: 1596375
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | corecount: 4
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | event service: False
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | sizes: {0: 2405190, 2: 2405396, 11: 2405424, 3833: 2440143, 3834: 2440143, 3836: 2440313}
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | --------------------------------------------------
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | 
[2025-06-04 13:59:11] 2025-06-04 11:58:52,210 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-06-04 13:59:11] 2025-06-04 11:58:52,220 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,220 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,220 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,220 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,220 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,220 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,220 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,220 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,220 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,220 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,220 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,221 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,221 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,221 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,221 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,221 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,221 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,221 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 13:59:11] 2025-06-04 11:58:52,221 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,221 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 13:59:11] 2025-06-04 11:58:52,221 | INFO     | job 6678287179 has completed (purged errors)
[2025-06-04 13:59:11] 2025-06-04 11:58:52,221 | INFO     | overall cleanup function is called
[2025-06-04 13:59:11] 2025-06-04 11:58:53,226 | INFO     | --- collectZombieJob: --- 10, [1596375]
[2025-06-04 13:59:11] 2025-06-04 11:58:53,226 | INFO     | zombie collector waiting for pid 1596375
[2025-06-04 13:59:11] 2025-06-04 11:58:53,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 13:59:11] 2025-06-04 11:58:53,226 | INFO     | collected zombie processes
[2025-06-04 13:59:11] 2025-06-04 11:58:53,226 | INFO     | will attempt to kill all subprocesses of pid=1596375
[2025-06-04 13:59:11] 2025-06-04 11:58:53,266 | INFO     | process IDs to be killed: [1596375] (in reverse order)
[2025-06-04 13:59:11] 2025-06-04 11:58:53,292 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 13:59:11] 2025-06-04 11:58:53,292 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 13:59:11] 2025-06-04 11:58:53,294 | INFO     | did not find any defunct processes belonging to 1596375
[2025-06-04 13:59:11] 2025-06-04 11:58:53,295 | INFO     | did not find any defunct processes belonging to 1596375
[2025-06-04 13:59:11] 2025-06-04 11:58:53,295 | INFO     | ready for new job
[2025-06-04 13:59:11] 2025-06-04 11:58:53,295 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 13:59:11] 2025-06-04 11:58:53,296 | INFO     | **************************************
[2025-06-04 13:59:11] 2025-06-04 11:58:53,296 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 13:59:11] 2025-06-04 11:58:53,296 | INFO     | **************************************
[2025-06-04 13:59:11] 2025-06-04 11:58:53,296 | INFO     | 
[2025-06-04 13:59:11] 2025-06-04 11:58:53,296 | INFO     | architecture information:
[2025-06-04 13:59:11] 2025-06-04 11:58:53,296 | INFO     | executing command: cat /etc/os-release
[2025-06-04 13:59:11] 2025-06-04 11:58:53,304 | INFO     | cat /etc/os-release:
[2025-06-04 13:59:11] NAME="CentOS Linux"
[2025-06-04 13:59:11] VERSION="7 (Core)"
[2025-06-04 13:59:11] ID="centos"
[2025-06-04 13:59:11] ID_LIKE="rhel fedora"
[2025-06-04 13:59:11] VERSION_ID="7"
[2025-06-04 13:59:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 13:59:11] ANSI_COLOR="0;31"
[2025-06-04 13:59:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 13:59:11] HOME_URL="https://www.centos.org/"
[2025-06-04 13:59:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 13:59:11] 
[2025-06-04 13:59:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 13:59:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 13:59:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 13:59:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 13:59:11] 
[2025-06-04 13:59:11] 2025-06-04 11:58:53,304 | INFO     | **************************************
[2025-06-04 13:59:11] 2025-06-04 11:58:53,806 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-06-04 13:59:11] 2025-06-04 11:58:53,815 | INFO     | sufficient remaining disk space (883950616576 B)
[2025-06-04 13:59:11] 2025-06-04 11:58:53,815 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 13:59:11] 2025-06-04 11:58:53,815 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 13:59:11] 2025-06-04 11:58:53,815 | INFO     | update_server=False
[2025-06-04 13:59:11] 2025-06-04 11:58:53,815 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 13:59:11] 2025-06-04 11:58:53,815 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 13:59:11] 2025-06-04 11:58:53,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:59:11] 2025-06-04 11:58:53,816 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 13:59:11] 2025-06-04 11:58:53,816 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 13:59:11] 2025-06-04 11:58:53,816 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 13:59:11] 2025-06-04 11:58:54,081 | INFO     | all job control threads have been joined
[2025-06-04 13:59:11] 2025-06-04 11:58:54,469 | INFO     | all payload control threads have been joined
[2025-06-04 13:59:11] 2025-06-04 11:58:54,541 | WARNING  | process 1596375 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 13:59:11] 2025-06-04 11:58:54,570 | INFO     | using path: /var/lib/boinc-client/slots/3/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 13:59:11] 2025-06-04 11:58:54,612 | INFO     | number of running child processes to parent process 1596375: 1
[2025-06-04 13:59:11] 2025-06-04 11:58:54,612 | INFO     | maximum number of monitored processes: 6
[2025-06-04 13:59:11] 2025-06-04 11:58:54,612 | INFO     | aborting job monitoring since job object (job id=6678287179) has expired
[2025-06-04 13:59:11] 2025-06-04 11:58:54,612 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:59:11] 2025-06-04 11:58:54,612 | INFO     | will abort loop
[2025-06-04 13:59:11] 2025-06-04 11:58:54,650 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 13:59:11] 2025-06-04 11:58:54,754 | INFO     | all data control threads have been joined
[2025-06-04 13:59:11] 2025-06-04 11:58:54,818 | INFO     | [job] retrieve thread has finished
[2025-06-04 13:59:11] 2025-06-04 11:58:54,821 | INFO     | [job] queue monitor thread has finished
[2025-06-04 13:59:11] 2025-06-04 11:58:54,846 | INFO     | [job] validate thread has finished
[2025-06-04 13:59:11] 2025-06-04 11:58:54,914 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 13:59:11] 2025-06-04 11:58:54,946 | INFO     | [data] copytool_in thread has finished
[2025-06-04 13:59:11] 2025-06-04 11:58:55,086 | INFO     | [job] control thread has finished
[2025-06-04 13:59:11] 2025-06-04 11:58:55,294 | INFO     | [payload] failed_post thread has finished
[2025-06-04 13:59:11] 2025-06-04 11:58:55,474 | INFO     | [payload] control thread has finished
[2025-06-04 13:59:11] 2025-06-04 11:58:55,618 | INFO     | [job] job monitor thread has finished
[2025-06-04 13:59:11] 2025-06-04 11:58:55,718 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 13:59:11] 2025-06-04 11:58:55,759 | INFO     | [data] control thread has finished
[2025-06-04 13:59:11] 2025-06-04 11:58:56,158 | INFO     | [payload] validate_post thread has finished
[2025-06-04 13:59:11] 2025-06-04 11:58:56,166 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 13:59:11] 2025-06-04 11:58:56,282 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 13:59:11] 2025-06-04 11:58:56,654 | INFO     | [data] copytool_out thread has finished
[2025-06-04 13:59:11] 2025-06-04 11:59:00,170 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 13:59:11] 2025-06-04 11:59:04,306 | INFO     | job.realtimelogging is not enabled
[2025-06-04 13:59:11] 2025-06-04 11:59:05,310 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 13:59:11] 2025-06-04 11:59:05,959 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140401345996608)>', '<ExcThread(monitor, started 140400861898496)>']
[2025-06-04 13:59:11] 2025-06-04 11:59:06,866 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 13:59:11] 2025-06-04 11:59:06,866 | INFO     | [monitor] control thread has ended
[2025-06-04 13:59:11] 2025-06-04 11:59:10,982 | INFO     | all workflow threads have been joined
[2025-06-04 13:59:11] 2025-06-04 11:59:10,982 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 13:59:11] 2025-06-04 11:59:10,982 | INFO     | traces error code: 0
[2025-06-04 13:59:11] 2025-06-04 11:59:10,982 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 13:59:11] 2025-06-04 11:59:11,035 [wrapper] ==== pilot stdout END ====
[2025-06-04 13:59:11] 2025-06-04 11:59:11,036 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 13:59:11] 2025-06-04 11:59:11,037 [wrapper] pilotpid: 1589864
[2025-06-04 13:59:11] 2025-06-04 11:59:11,039 [wrapper] Pilot exit status: 0
[2025-06-04 13:59:11] 2025-06-04 11:59:11,043 [wrapper] pandaids: 6678287179
[2025-06-04 13:59:11] 2025-06-04 11:59:11,056 [wrapper] cleanup supervisor_pilot 1669550 1589865
[2025-06-04 13:59:11] 2025-06-04 11:59:11,058 [wrapper] Test setup, not cleaning
[2025-06-04 13:59:11] 2025-06-04 11:59:11,059 [wrapper] apfmon messages muted
[2025-06-04 13:59:11] 2025-06-04 11:59:11,060 [wrapper] ==== wrapper stdout END ====
[2025-06-04 13:59:11] 2025-06-04 11:59:11,061 [wrapper] ==== wrapper stderr END ====
[2025-06-04 13:59:11]  *** Error codes and diagnostics ***
[2025-06-04 13:59:11]     "exeErrorCode": 0,
[2025-06-04 13:59:11]     "exeErrorDiag": "",
[2025-06-04 13:59:11]     "pilotErrorCode": 0,
[2025-06-04 13:59:11]     "pilotErrorDiag": "",
[2025-06-04 13:59:11]  *** Listing of results directory ***
[2025-06-04 13:59:11] total 389648
[2025-06-04 13:59:11] -rw-r--r-- 1 boinc boinc    495897 Jun  4 05:54 pilot3.tar.gz
[2025-06-04 13:59:11] -rwx------ 1 boinc boinc     37140 Jun  4 05:59 runpilot2-wrapper.sh
[2025-06-04 13:59:11] -rw-r--r-- 1 boinc boinc      5111 Jun  4 05:59 queuedata.json
[2025-06-04 13:59:11] -rw-r--r-- 1 boinc boinc       100 Jun  4 12:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 13:59:11] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 12:54 run_atlas
[2025-06-04 13:59:11] -rw-r--r-- 1 boinc boinc       105 Jun  4 12:54 job.xml
[2025-06-04 13:59:11] -rw-r--r-- 2 boinc boinc     15093 Jun  4 12:54 start_atlas.sh
[2025-06-04 13:59:11] drwxrwx--x 2 boinc boinc      4096 Jun  4 12:54 shared
[2025-06-04 13:59:11] -rw-r--r-- 2 boinc boinc    508874 Jun  4 12:54 input.tar.gz
[2025-06-04 13:59:11] -rw-r--r-- 1 boinc boinc      9222 Jun  4 12:54 init_data.xml
[2025-06-04 13:59:11] -rw-r--r-- 2 boinc boinc 215185435 Jun  4 12:54 EVNT.45006593._002076.pool.root.1
[2025-06-04 13:59:11] -rw-r--r-- 1 boinc boinc         0 Jun  4 12:54 boinc_lockfile
[2025-06-04 13:59:11] -rw-r--r-- 1 boinc boinc      2524 Jun  4 12:54 pandaJob.out
[2025-06-04 13:59:11] -rw------- 1 boinc boinc    986812 Jun  4 12:54 agis_schedconf.cvmfs.json
[2025-06-04 13:59:11] -rw------- 1 boinc boinc   1603667 Jun  4 12:54 agis_ddmendpoints.agis.ALL.json
[2025-06-04 13:59:11] drwx------ 4 boinc boinc      4096 Jun  4 12:54 pilot3
[2025-06-04 13:59:11] -rw------- 1 boinc boinc        95 Jun  4 13:58 pilot_heartbeat.json
[2025-06-04 13:59:11] -rw-r--r-- 1 boinc boinc       529 Jun  4 13:58 boinc_task_state.xml
[2025-06-04 13:59:11] -rw------- 1 boinc boinc 178699061 Jun  4 13:58 HITS.45006595._051826.pool.root.1
[2025-06-04 13:59:11] -rw------- 1 boinc boinc      1015 Jun  4 13:58 memory_monitor_summary.json
[2025-06-04 13:59:11] -rw------- 1 boinc boinc    245278 Jun  4 13:58 log.45006595._051826.job.log.tgz.1
[2025-06-04 13:59:11] -rw------- 1 boinc boinc      7662 Jun  4 13:58 heartbeat.json
[2025-06-04 13:59:11] -rw-r--r-- 1 boinc boinc        27 Jun  4 13:59 wrapper_checkpoint.txt
[2025-06-04 13:59:11] -rw-r--r-- 1 boinc boinc      8192 Jun  4 13:59 boinc_mmap_file
[2025-06-04 13:59:11] -rw------- 1 boinc boinc      5084 Jun  4 13:59 pilotlog.txt
[2025-06-04 13:59:11] -rw------- 1 boinc boinc    394513 Jun  4 13:59 log.45006595._051826.job.log.1
[2025-06-04 13:59:11] -rw------- 1 boinc boinc       357 Jun  4 13:59 output.list
[2025-06-04 13:59:11] -rw-r--r-- 1 boinc boinc       620 Jun  4 13:59 runtime_log
[2025-06-04 13:59:11] -rw------- 1 boinc boinc    655360 Jun  4 13:59 result.tar.gz
[2025-06-04 13:59:11] -rw-r--r-- 1 boinc boinc      8779 Jun  4 13:59 runtime_log.err
[2025-06-04 13:59:11] -rw------- 1 boinc boinc       654 Jun  4 13:59 f9JNDmZSug7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDme5mKDm18dBHm.diag
[2025-06-04 13:59:11] -rw-r--r-- 1 boinc boinc     21368 Jun  4 13:59 stderr.txt
[2025-06-04 13:59:11] HITS file was successfully produced:
[2025-06-04 13:59:11] -rw------- 1 boinc boinc 178699061 Jun  4 13:58 shared/HITS.pool.root.1
[2025-06-04 13:59:11]  *** Contents of shared directory: ***
[2025-06-04 13:59:11] total 385820
[2025-06-04 13:59:11] -rw-r--r-- 2 boinc boinc     15093 Jun  4 12:54 start_atlas.sh
[2025-06-04 13:59:11] -rw-r--r-- 2 boinc boinc    508874 Jun  4 12:54 input.tar.gz
[2025-06-04 13:59:11] -rw-r--r-- 2 boinc boinc 215185435 Jun  4 12:54 ATLAS.root_0
[2025-06-04 13:59:11] -rw------- 1 boinc boinc 178699061 Jun  4 13:58 HITS.pool.root.1
[2025-06-04 13:59:11] -rw------- 1 boinc boinc    655360 Jun  4 13:59 result.tar.gz
13:59:13 (1586191): run_atlas exited; CPU time 14713.834903
13:59:13 (1586191): called boinc_finish(0)

</stderr_txt>
]]>

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