Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:09:32 (6906): wrapper (7.7.26015): starting
19:09:32 (6906): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 19:09:32] Arguments: --nthreads 8
[2025-06-04 19:09:32] Threads: 8
[2025-06-04 19:09:32] Checking for CVMFS
[2025-06-04 19:09:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:09:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:09:33] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:09:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:09:34] 2.11.2.0 3966 33477 93864 146788 2 200 17598612 25165824 3957 130560 0 18455555 99.790 20245110 2151 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 19:09:34] CVMFS is ok
[2025-06-04 19:09:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:09:34] Checking for apptainer binary...
[2025-06-04 19:09:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:09:34] Running /usr/bin/apptainer --version
[2025-06-04 19:09:34] apptainer version 1.3.2-1.el7
[2025-06-04 19:09:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:09:37] cg-vwn439.simple-grid.lan
[2025-06-04 19:09:37] apptainer works
[2025-06-04 19:09:48] Set ATHENA_PROC_NUMBER=8
[2025-06-04 19:09:48] Set ATHENA_CORE_NUMBER=8
[2025-06-04 19:09:48] Starting ATLAS job with PandaID=6678364331
[2025-06-04 19:09:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 00:06:04]  *** The last 200 lines of the pilot log: ***
[2025-06-05 00:06:04] 2025-06-04 20:49:47,361 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6678364331/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 00:06:04] 2025-06-04 20:49:47,361 | INFO     | extracted standard info from prmon json
[2025-06-05 00:06:04] 2025-06-04 20:49:47,362 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 00:06:04] 2025-06-04 20:49:47,362 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 00:06:04] 2025-06-04 20:49:47,362 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 00:06:04] 2025-06-04 20:49:47,362 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 00:06:04] 2025-06-04 20:49:47,367 | INFO     | fitting pss+swap vs Time
[2025-06-05 00:06:04] 2025-06-04 20:49:47,368 | INFO     | sum of square deviations: 3038856977.5
[2025-06-05 00:06:04] 2025-06-04 20:49:47,369 | INFO     | sum of deviations: 15173025075.999998
[2025-06-05 00:06:04] 2025-06-04 20:49:47,369 | INFO     | mean x: 1749063563.5
[2025-06-05 00:06:04] 2025-06-04 20:49:47,370 | INFO     | mean y: 2464707.429906542
[2025-06-05 00:06:04] 2025-06-04 20:49:47,370 | INFO     | -- intersect: -8730616679.748808
[2025-06-05 00:06:04] 2025-06-04 20:49:47,370 | INFO     | intersect: -8730616679.748808
[2025-06-05 00:06:04] 2025-06-04 20:49:47,370 | INFO     | chi2: 2.4493383712374532
[2025-06-05 00:06:04] 2025-06-04 20:49:47,371 | INFO     | sum of square deviations: 2830787960.0
[2025-06-05 00:06:04] 2025-06-04 20:49:47,372 | INFO     | sum of deviations: 28778674428.0
[2025-06-05 00:06:04] 2025-06-04 20:49:47,372 | INFO     | mean x: 1749063411.0
[2025-06-05 00:06:04] 2025-06-04 20:49:47,372 | INFO     | mean y: 2474483.7942583733
[2025-06-05 00:06:04] 2025-06-04 20:49:47,373 | INFO     | -- intersect: -17779050367.36279
[2025-06-05 00:06:04] 2025-06-04 20:49:47,373 | INFO     | intersect: -17779050367.36279
[2025-06-05 00:06:04] 2025-06-04 20:49:47,373 | INFO     | chi2: 1.6788759728934017
[2025-06-05 00:06:04] 2025-06-04 20:49:47,373 | INFO     | current chi2=1.6788759728934017 (change=31.455939587260822 %)
[2025-06-05 00:06:04] 2025-06-04 20:49:47,373 | INFO     | sum of square deviations: 2632440055.0
[2025-06-05 00:06:04] 2025-06-04 20:49:47,388 | INFO     | sum of deviations: 28065668547.0
[2025-06-05 00:06:04] 2025-06-04 20:49:47,389 | INFO     | mean x: 1749063258.5
[2025-06-05 00:06:04] 2025-06-04 20:49:47,389 | INFO     | mean y: 2473935.5
[2025-06-05 00:06:04] 2025-06-04 20:49:47,389 | INFO     | -- intersect: -18645103466.14259
[2025-06-05 00:06:04] 2025-06-04 20:49:47,389 | INFO     | intersect: -18645103466.14259
[2025-06-05 00:06:04] 2025-06-04 20:49:47,389 | INFO     | chi2: 1.6799585389047544
[2025-06-05 00:06:04] 2025-06-04 20:49:47,389 | INFO     | current chi2=1.6799585389047544 (change=-0.06448159535495597 %)
[2025-06-05 00:06:04] 2025-06-04 20:49:47,389 | INFO     | right removable region: 203
[2025-06-05 00:06:04] 2025-06-04 20:49:47,390 | INFO     | sum of square deviations: 2830787960.0
[2025-06-05 00:06:04] 2025-06-04 20:49:47,391 | INFO     | sum of deviations: -21608906021.000004
[2025-06-05 00:06:04] 2025-06-04 20:49:47,392 | INFO     | mean x: 1749063716.0
[2025-06-05 00:06:04] 2025-06-04 20:49:47,392 | INFO     | mean y: 2491425.8181818184
[2025-06-05 00:06:04] 2025-06-04 20:49:47,392 | INFO     | -- intersect: 13354022518.16642
[2025-06-05 00:06:04] 2025-06-04 20:49:47,392 | INFO     | intersect: 13354022518.16642
[2025-06-05 00:06:04] 2025-06-04 20:49:47,392 | INFO     | chi2: 0.8443155826776695
[2025-06-05 00:06:04] 2025-06-04 20:49:47,392 | INFO     | current chi2=0.8443155826776695 (change=65.52883045509532 %)
[2025-06-05 00:06:04] 2025-06-04 20:49:47,393 | INFO     | sum of square deviations: 2632440055.0
[2025-06-05 00:06:04] 2025-06-04 20:49:47,394 | INFO     | sum of deviations: -25623376746.5
[2025-06-05 00:06:04] 2025-06-04 20:49:47,394 | INFO     | mean x: 1749063868.5
[2025-06-05 00:06:04] 2025-06-04 20:49:47,394 | INFO     | mean y: 2494469.367647059
[2025-06-05 00:06:04] 2025-06-04 20:49:47,395 | INFO     | -- intersect: 17027354112.8539
[2025-06-05 00:06:04] 2025-06-04 20:49:47,395 | INFO     | intersect: 17027354112.8539
[2025-06-05 00:06:04] 2025-06-04 20:49:47,395 | INFO     | chi2: 0.807330138540744
[2025-06-05 00:06:04] 2025-06-04 20:49:47,395 | INFO     | current chi2=0.807330138540744 (change=4.380523692294007 %)
[2025-06-05 00:06:04] 2025-06-04 20:49:47,395 | INFO     | left removable region: 20
[2025-06-05 00:06:04] 2025-06-04 20:49:47,396 | INFO     | sum of square deviations: 1900284932.0
[2025-06-05 00:06:04] 2025-06-04 20:49:47,397 | INFO     | sum of deviations: -9961560408.999979
[2025-06-05 00:06:04] 2025-06-04 20:49:47,397 | INFO     | mean x: 1749063838.0
[2025-06-05 00:06:04] 2025-06-04 20:49:47,397 | INFO     | mean y: 2504395.180327869
[2025-06-05 00:06:04] 2025-06-04 20:49:47,397 | INFO     | -- intersect: 9171342598.352669
[2025-06-05 00:06:04] 2025-06-04 20:49:47,397 | INFO     | intersect: 9171342598.352669
[2025-06-05 00:06:04] 2025-06-04 20:49:47,398 | INFO     | chi2: 0.013884712453475523
[2025-06-05 00:06:04] 2025-06-04 20:49:47,398 | INFO     | -- intersect: 9171342598.352669
[2025-06-05 00:06:04] 2025-06-04 20:49:47,398 | INFO     | current memory leak: -5.24 B/s (using 183 data points, chi2=0.01)
[2025-06-05 00:06:04] 2025-06-04 20:49:47,399 | INFO     | ..............................
[2025-06-05 00:06:04] 2025-06-04 20:49:47,399 | INFO     | . Timing measurements:
[2025-06-05 00:06:04] 2025-06-04 20:49:47,399 | INFO     | . get job = 0 s
[2025-06-05 00:06:04] 2025-06-04 20:49:47,399 | INFO     | . initial setup = 3 s
[2025-06-05 00:06:04] 2025-06-04 20:49:47,399 | INFO     | . payload setup = 15 s
[2025-06-05 00:06:04] 2025-06-04 20:49:47,399 | INFO     | . stage-in = 0 s
[2025-06-05 00:06:04] 2025-06-04 20:49:47,399 | INFO     | . payload execution = 13041 s
[2025-06-05 00:06:04] 2025-06-04 20:49:47,399 | INFO     | . stage-out = 3 s
[2025-06-05 00:06:04] 2025-06-04 20:49:47,399 | INFO     | . log creation = 1 s
[2025-06-05 00:06:04] 2025-06-04 20:49:47,399 | INFO     | ..............................
[2025-06-05 00:06:04] 2025-06-04 20:49:47,553 | INFO     | 
[2025-06-05 00:06:04] 2025-06-04 20:49:47,553 | INFO     | job summary report
[2025-06-05 00:06:04] 2025-06-04 20:49:47,553 | INFO     | --------------------------------------------------
[2025-06-05 00:06:04] 2025-06-04 20:49:47,553 | INFO     | PanDA job id: 6678364331
[2025-06-05 00:06:04] 2025-06-04 20:49:47,553 | INFO     | task id: 45006595
[2025-06-05 00:06:04] 2025-06-04 20:49:47,554 | INFO     | errors: (none)
[2025-06-05 00:06:04] 2025-06-04 20:49:47,554 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 00:06:04] 2025-06-04 20:49:47,554 | INFO     | pilot state: finished 
[2025-06-05 00:06:04] 2025-06-04 20:49:47,554 | INFO     | transexitcode: 0
[2025-06-05 00:06:04] 2025-06-04 20:49:47,554 | INFO     | exeerrorcode: 0
[2025-06-05 00:06:04] 2025-06-04 20:49:47,554 | INFO     | exeerrordiag: 
[2025-06-05 00:06:04] 2025-06-04 20:49:47,554 | INFO     | exitcode: 0
[2025-06-05 00:06:04] 2025-06-04 20:49:47,554 | INFO     | exitmsg: OK
[2025-06-05 00:06:04] 2025-06-04 20:49:47,554 | INFO     | cpuconsumptiontime: 50020 s
[2025-06-05 00:06:04] 2025-06-04 20:49:47,554 | INFO     | nevents: 400
[2025-06-05 00:06:04] 2025-06-04 20:49:47,554 | INFO     | neventsw: 0
[2025-06-05 00:06:04] 2025-06-04 20:49:47,555 | INFO     | pid: 19150
[2025-06-05 00:06:04] 2025-06-04 20:49:47,555 | INFO     | pgrp: 19150
[2025-06-05 00:06:04] 2025-06-04 20:49:47,555 | INFO     | corecount: 8
[2025-06-05 00:06:04] 2025-06-04 20:49:47,555 | INFO     | event service: False
[2025-06-05 00:06:04] 2025-06-04 20:49:47,555 | INFO     | sizes: {0: 2396514, 1: 2397370, 2: 2397370, 11: 2397604, 12: 2397632, 13060: 2426991, 13064: 2435932, 13066: 2435988, 13158: 2436158}
[2025-06-05 00:06:04] 2025-06-04 20:49:47,555 | INFO     | --------------------------------------------------
[2025-06-05 00:06:04] 2025-06-04 20:49:47,555 | INFO     | 
[2025-06-05 00:06:04] 2025-06-04 20:49:47,555 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-05 00:06:04] 2025-06-04 20:49:48,107 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,108 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,108 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,108 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,108 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,108 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,108 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,108 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,109 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,109 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,109 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,109 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,109 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,109 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,109 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,109 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,109 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,109 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 00:06:04] 2025-06-04 20:49:48,109 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,109 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 00:06:04] 2025-06-04 20:49:48,110 | INFO     | job 6678364331 has completed (purged errors)
[2025-06-05 00:06:04] 2025-06-04 20:49:48,110 | INFO     | overall cleanup function is called
[2025-06-05 00:06:04] 2025-06-04 20:49:49,119 | INFO     | --- collectZombieJob: --- 10, [19150]
[2025-06-05 00:06:04] 2025-06-04 20:49:49,119 | INFO     | zombie collector waiting for pid 19150
[2025-06-05 00:06:04] 2025-06-04 20:49:49,119 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 00:06:04] 2025-06-04 20:49:49,120 | INFO     | collected zombie processes
[2025-06-05 00:06:04] 2025-06-04 20:49:49,120 | INFO     | will attempt to kill all subprocesses of pid=19150
[2025-06-05 00:06:04] 2025-06-04 20:49:49,265 | INFO     | process IDs to be killed: [19150] (in reverse order)
[2025-06-05 00:06:04] 2025-06-04 20:49:49,333 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 00:06:04] 2025-06-04 20:49:49,333 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 00:06:04] 2025-06-04 20:49:49,337 | INFO     | did not find any defunct processes belonging to 19150
[2025-06-05 00:06:04] 2025-06-04 20:49:49,341 | INFO     | did not find any defunct processes belonging to 19150
[2025-06-05 00:06:04] 2025-06-04 20:49:49,341 | INFO     | ready for new job
[2025-06-05 00:06:04] 2025-06-04 20:49:49,341 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 00:06:04] 2025-06-04 20:49:49,343 | INFO     | **************************************
[2025-06-05 00:06:04] 2025-06-04 20:49:49,343 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 00:06:04] 2025-06-04 20:49:49,343 | INFO     | **************************************
[2025-06-05 00:06:04] 2025-06-04 20:49:49,344 | INFO     | 
[2025-06-05 00:06:04] 2025-06-04 20:49:49,344 | INFO     | pilot is running in a VM
[2025-06-05 00:06:04] 2025-06-04 20:49:49,344 | INFO     | architecture information:
[2025-06-05 00:06:04] 2025-06-04 20:49:49,345 | INFO     | executing command: cat /etc/os-release
[2025-06-05 00:06:04] 2025-06-04 20:49:49,368 | INFO     | cat /etc/os-release:
[2025-06-05 00:06:04] NAME="CentOS Linux"
[2025-06-05 00:06:04] VERSION="7 (Core)"
[2025-06-05 00:06:04] ID="centos"
[2025-06-05 00:06:04] ID_LIKE="rhel fedora"
[2025-06-05 00:06:04] VERSION_ID="7"
[2025-06-05 00:06:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 00:06:04] ANSI_COLOR="0;31"
[2025-06-05 00:06:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 00:06:04] HOME_URL="https://www.centos.org/"
[2025-06-05 00:06:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 00:06:04] 
[2025-06-05 00:06:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 00:06:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 00:06:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 00:06:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 00:06:04] 
[2025-06-05 00:06:04] 2025-06-04 20:49:49,368 | INFO     | **************************************
[2025-06-05 00:06:04] 2025-06-04 20:49:49,872 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-05 00:06:04] 2025-06-04 20:49:50,038 | INFO     | sufficient remaining disk space (496801677312 B)
[2025-06-05 00:06:04] 2025-06-04 20:49:50,038 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 00:06:04] 2025-06-04 20:49:50,038 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 00:06:04] 2025-06-04 20:49:50,038 | INFO     | update_server=False
[2025-06-05 00:06:04] 2025-06-04 20:49:50,038 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 00:06:04] 2025-06-04 20:49:50,039 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:06:04] 2025-06-04 20:49:50,039 | INFO     | aborting loop
[2025-06-05 00:06:04] 2025-06-04 20:49:50,040 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 00:06:04] 2025-06-04 20:49:50,159 | INFO     | all payload control threads have been joined
[2025-06-05 00:06:04] 2025-06-04 20:49:50,400 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 00:06:04] 2025-06-04 20:49:50,400 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 00:06:04] 2025-06-04 20:49:50,401 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 00:06:04] 2025-06-04 20:49:50,853 | INFO     | all data control threads have been joined
[2025-06-05 00:06:04] 2025-06-04 20:49:51,044 | INFO     | [job] retrieve thread has finished
[2025-06-05 00:06:04] 2025-06-04 20:49:51,045 | INFO     | [job] job monitor thread has finished
[2025-06-05 00:06:04] 2025-06-04 20:49:51,159 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 00:06:04] 2025-06-04 20:49:51,165 | INFO     | [payload] control thread has finished
[2025-06-05 00:06:04] 2025-06-04 20:49:51,187 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 00:06:04] 2025-06-04 20:49:51,600 | INFO     | all job control threads have been joined
[2025-06-05 00:06:04] 2025-06-04 20:49:51,688 | INFO     | [data] copytool_in thread has finished
[2025-06-05 00:06:04] 2025-06-04 20:49:51,859 | INFO     | [data] control thread has finished
[2025-06-05 00:06:04] 2025-06-04 20:49:51,951 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 00:06:04] 2025-06-04 20:49:52,048 | INFO     | [data] copytool_out thread has finished
[2025-06-05 00:06:04] 2025-06-04 20:49:52,216 | INFO     | [job] validate thread has finished
[2025-06-05 00:06:04] 2025-06-04 20:49:52,322 | INFO     | [payload] failed_post thread has finished
[2025-06-05 00:06:04] 2025-06-04 20:49:52,359 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 00:06:04] 2025-06-04 20:49:52,433 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 00:06:04] 2025-06-04 20:49:52,452 | INFO     | [payload] validate_post thread has finished
[2025-06-05 00:06:04] 2025-06-04 20:49:52,566 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:06:04] 2025-06-04 20:49:52,606 | INFO     | [job] control thread has finished
[2025-06-05 00:06:04] 2025-06-04 20:49:53,572 | INFO     | [job] queue monitor thread has finished
[2025-06-05 00:06:04] 2025-06-04 20:49:56,442 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 00:06:04] 2025-06-04 20:49:57,158 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140260153022272)>', '<ExcThread(monitor, started 140259706779392)>']
[2025-06-05 00:06:04] 2025-06-04 20:49:57,441 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 00:06:04] 2025-06-04 20:49:57,441 | INFO     | [monitor] control thread has ended
[2025-06-05 00:06:04] 2025-06-04 20:50:02,184 | INFO     | all workflow threads have been joined
[2025-06-05 00:06:04] 2025-06-04 20:50:02,184 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 00:06:04] 2025-06-04 20:50:02,185 | INFO     | traces error code: 0
[2025-06-05 00:06:04] 2025-06-04 20:50:02,185 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 00:06:04] 2025-06-04 20:50:02,539 [wrapper] ==== pilot stdout END ====
[2025-06-05 00:06:04] 2025-06-04 20:50:02,639 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 00:06:04] 2025-06-04 20:50:02,721 [wrapper] pilotpid: 10742
[2025-06-05 00:06:04] 2025-06-04 20:50:02,775 [wrapper] Pilot exit status: 0
[2025-06-05 00:06:04] 2025-06-04 20:50:02,945 [wrapper] pandaids: 6678364331
[2025-06-05 00:06:04] 2025-06-04 20:50:02,985 [wrapper] cleanup supervisor_pilot 28408 10743
[2025-06-05 00:06:04] 2025-06-04 20:50:03,087 [wrapper] Test setup, not cleaning
[2025-06-05 00:06:04] 2025-06-04 20:50:03,130 [wrapper] apfmon messages muted
[2025-06-05 00:06:04] 2025-06-04 20:50:03,232 [wrapper] ==== wrapper stdout END ====
[2025-06-05 00:06:04] 2025-06-04 20:50:03,334 [wrapper] ==== wrapper stderr END ====
[2025-06-05 00:06:04]  *** Error codes and diagnostics ***
[2025-06-05 00:06:04]     "exeErrorCode": 0,
[2025-06-05 00:06:04]     "exeErrorDiag": "",
[2025-06-05 00:06:04]     "pilotErrorCode": 0,
[2025-06-05 00:06:04]     "pilotErrorDiag": "",
[2025-06-05 00:06:04]  *** Listing of results directory ***
[2025-06-05 00:06:04] total 388556
[2025-06-05 00:06:04] -rw-r--r--. 1 boinc boinc    495897 Jun  4 07:59 pilot3.tar.gz
[2025-06-05 00:06:04] -rwx------. 1 boinc boinc     37140 Jun  4 08:14 runpilot2-wrapper.sh
[2025-06-05 00:06:04] -rw-r--r--. 1 boinc boinc      5111 Jun  4 08:14 queuedata.json
[2025-06-05 00:06:04] -rw-r--r--. 1 boinc boinc       100 Jun  4 19:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 00:06:04] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 19:09 run_atlas
[2025-06-05 00:06:04] -rw-r--r--. 1 boinc boinc       105 Jun  4 19:09 job.xml
[2025-06-05 00:06:04] -rw-r--r--. 2 boinc boinc 215481643 Jun  4 19:09 EVNT.45006593._002154.pool.root.1
[2025-06-05 00:06:04] -rw-r--r--. 2 boinc boinc    508886 Jun  4 19:09 input.tar.gz
[2025-06-05 00:06:04] -rw-r--r--. 1 boinc boinc      6392 Jun  4 19:09 init_data.xml
[2025-06-05 00:06:04] -rw-r--r--. 2 boinc boinc     15093 Jun  4 19:09 start_atlas.sh
[2025-06-05 00:06:04] drwxrwx--x. 2 boinc boinc        68 Jun  4 19:09 shared
[2025-06-05 00:06:04] -rw-r--r--. 1 boinc boinc         0 Jun  4 19:09 boinc_lockfile
[2025-06-05 00:06:04] -rw-r--r--. 1 boinc boinc      2525 Jun  4 19:09 pandaJob.out
[2025-06-05 00:06:04] -rw-------. 1 boinc boinc    990984 Jun  4 19:10 agis_schedconf.cvmfs.json
[2025-06-05 00:06:04] drwx------. 4 boinc boinc      4096 Jun  4 19:10 pilot3
[2025-06-05 00:06:04] -rw-------. 1 boinc boinc 175520157 Jun  4 22:46 HITS.45006595._053831.pool.root.1
[2025-06-05 00:06:04] -rw-r--r--. 1 boinc boinc       531 Jun  4 22:47 boinc_task_state.xml
[2025-06-05 00:06:04] -rw-------. 1 boinc boinc      1016 Jun  4 22:48 memory_monitor_summary.json
[2025-06-05 00:06:04] -rw-------. 1 boinc boinc   1598969 Jun  4 22:48 agis_ddmendpoints.agis.ALL.json
[2025-06-05 00:06:04] -rw-------. 1 boinc boinc    390946 Jun  4 22:48 log.45006595._053831.job.log.tgz.1
[2025-06-05 00:06:04] -rw-------. 1 boinc boinc        95 Jun  4 22:49 pilot_heartbeat.json
[2025-06-05 00:06:04] -rw-------. 1 boinc boinc      7702 Jun  4 22:49 heartbeat.json
[2025-06-05 00:06:04] -rw-------. 1 boinc boinc      4416 Jun  4 22:50 pilotlog.txt
[2025-06-05 00:06:04] -rw-------. 1 boinc boinc   1140319 Jun  4 22:50 log.45006595._053831.job.log.1
[2025-06-05 00:06:04] -rw-------. 1 boinc boinc       357 Jun  4 22:50 output.list
[2025-06-05 00:06:04] -rw-r--r--. 1 boinc boinc       620 Jun  4 22:50 runtime_log
[2025-06-05 00:06:04] -rw-------. 1 boinc boinc   1546240 Jun  4 22:50 result.tar.gz
[2025-06-05 00:06:04] -rw-------. 1 boinc boinc       656 Jun  4 22:50 Z1PLDmyZwg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXRnKDmSksIQn.diag
[2025-06-05 00:06:04] -rw-r--r--. 1 boinc boinc      8659 Jun  4 22:50 runtime_log.err
[2025-06-05 00:06:04] -rw-r--r--. 1 boinc boinc      8192 Jun  5 00:06 boinc_mmap_file
[2025-06-05 00:06:04] -rw-r--r--. 1 boinc boinc        28 Jun  5 00:06 wrapper_checkpoint.txt
[2025-06-05 00:06:04] -rw-r--r--. 1 boinc boinc     20482 Jun  5 00:06 stderr.txt
[2025-06-05 00:06:04] HITS file was successfully produced:
[2025-06-05 00:06:04] -rw-------. 1 boinc boinc 175520157 Jun  4 22:46 shared/HITS.pool.root.1
[2025-06-05 00:06:04]  *** Contents of shared directory: ***
[2025-06-05 00:06:04] total 383868
[2025-06-05 00:06:04] -rw-r--r--. 2 boinc boinc 215481643 Jun  4 19:09 ATLAS.root_0
[2025-06-05 00:06:04] -rw-r--r--. 2 boinc boinc    508886 Jun  4 19:09 input.tar.gz
[2025-06-05 00:06:04] -rw-r--r--. 2 boinc boinc     15093 Jun  4 19:09 start_atlas.sh
[2025-06-05 00:06:04] -rw-------. 1 boinc boinc 175520157 Jun  4 22:46 HITS.pool.root.1
[2025-06-05 00:06:04] -rw-------. 1 boinc boinc   1546240 Jun  4 22:50 result.tar.gz
00:06:06 (6906): run_atlas exited; CPU time 50191.476542
00:06:06 (6906): called boinc_finish(0)

</stderr_txt>
]]>

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