Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
05:30:28 (3390724): wrapper (7.7.26015): starting
05:30:28 (3390724): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 05:30:28] Arguments: --nthreads 4
[2025-06-04 05:30:28] Threads: 4
[2025-06-04 05:30:28] Checking for CVMFS
[2025-06-04 05:30:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 05:30:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 05:30:28] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 05:30:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 05:30:28] 2.12.6.0 2389267 2448 52840 146777 2 187 3759343 6144000 6445 130560 0 12777426 99.998 624753 5002 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.30:3128 1
[2025-06-04 05:30:28] CVMFS is ok
[2025-06-04 05:30:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:30:28] Checking for apptainer binary...
[2025-06-04 05:30:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 05:30:28] Running /usr/bin/apptainer --version
[2025-06-04 05:30:28] apptainer version 1.3.4
[2025-06-04 05:30:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 05:30:28] Starfish-Cruncher
[2025-06-04 05:30:28] apptainer works
[2025-06-04 05:30:28] Set ATHENA_PROC_NUMBER=4
[2025-06-04 05:30:28] Set ATHENA_CORE_NUMBER=4
[2025-06-04 05:30:28] Starting ATLAS job with PandaID=6678155198
[2025-06-04 05:30:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 07:25:32]  *** The last 200 lines of the pilot log: ***
[2025-06-04 07:25:32] 2025-06-04 12:25:20,579 | INFO     | extracted standard info from prmon json
[2025-06-04 07:25:32] 2025-06-04 12:25:20,579 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:25:32] 2025-06-04 12:25:20,579 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:25:32] 2025-06-04 12:25:20,579 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:25:32] 2025-06-04 12:25:20,579 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:25:32] 2025-06-04 12:25:20,581 | INFO     | fitting pss+swap vs Time
[2025-06-04 07:25:32] 2025-06-04 12:25:20,581 | INFO     | sum of square deviations: 447383272.0
[2025-06-04 07:25:32] 2025-06-04 12:25:20,582 | INFO     | sum of deviations: -3300237127.9999995
[2025-06-04 07:25:32] 2025-06-04 12:25:20,582 | INFO     | mean x: 1749036477.0
[2025-06-04 07:25:32] 2025-06-04 12:25:20,582 | INFO     | mean y: 2289975.690265487
[2025-06-04 07:25:32] 2025-06-04 12:25:20,582 | INFO     | -- intersect: 12904504879.2947
[2025-06-04 07:25:32] 2025-06-04 12:25:20,582 | INFO     | intersect: 12904504879.2947
[2025-06-04 07:25:32] 2025-06-04 12:25:20,582 | INFO     | chi2: 2.107865130225912
[2025-06-04 07:25:32] 2025-06-04 12:25:20,583 | INFO     | sum of square deviations: 390582207.0
[2025-06-04 07:25:32] 2025-06-04 12:25:20,583 | INFO     | sum of deviations: 3679045053.999998
[2025-06-04 07:25:32] 2025-06-04 12:25:20,583 | INFO     | mean x: 1749036324.5
[2025-06-04 07:25:32] 2025-06-04 12:25:20,583 | INFO     | mean y: 2308057.611111111
[2025-06-04 07:25:32] 2025-06-04 12:25:20,583 | INFO     | -- intersect: -16472542367.20115
[2025-06-04 07:25:32] 2025-06-04 12:25:20,583 | INFO     | intersect: -16472542367.20115
[2025-06-04 07:25:32] 2025-06-04 12:25:20,583 | INFO     | chi2: 1.3441811715628078
[2025-06-04 07:25:32] 2025-06-04 12:25:20,584 | INFO     | current chi2=1.3441811715628078 (change=36.230209784876315 %)
[2025-06-04 07:25:32] 2025-06-04 12:25:20,584 | INFO     | sum of square deviations: 338804492.0
[2025-06-04 07:25:32] 2025-06-04 12:25:20,584 | INFO     | sum of deviations: 3687892067.000008
[2025-06-04 07:25:32] 2025-06-04 12:25:20,584 | INFO     | mean x: 1749036172.0
[2025-06-04 07:25:32] 2025-06-04 12:25:20,584 | INFO     | mean y: 2308082.9417475727
[2025-06-04 07:25:32] 2025-06-04 12:25:20,584 | INFO     | -- intersect: -19035977346.918674
[2025-06-04 07:25:32] 2025-06-04 12:25:20,584 | INFO     | intersect: -19035977346.918674
[2025-06-04 07:25:32] 2025-06-04 12:25:20,584 | INFO     | chi2: 1.3465212168134466
[2025-06-04 07:25:32] 2025-06-04 12:25:20,585 | INFO     | current chi2=1.3465212168134466 (change=-0.17408704273979336 %)
[2025-06-04 07:25:32] 2025-06-04 12:25:20,585 | INFO     | right removable region: 102
[2025-06-04 07:25:32] 2025-06-04 12:25:20,585 | INFO     | sum of square deviations: 390582207.0
[2025-06-04 07:25:32] 2025-06-04 12:25:20,585 | INFO     | sum of deviations: -15201299643.5
[2025-06-04 07:25:32] 2025-06-04 12:25:20,585 | INFO     | mean x: 1749036629.5
[2025-06-04 07:25:32] 2025-06-04 12:25:20,585 | INFO     | mean y: 2320962.453703704
[2025-06-04 07:25:32] 2025-06-04 12:25:20,585 | INFO     | -- intersect: 68074110757.23765
[2025-06-04 07:25:32] 2025-06-04 12:25:20,585 | INFO     | intersect: 68074110757.23765
[2025-06-04 07:25:32] 2025-06-04 12:25:20,586 | INFO     | chi2: 0.8276206071463378
[2025-06-04 07:25:32] 2025-06-04 12:25:20,586 | INFO     | current chi2=0.8276206071463378 (change=60.73654830764069 %)
[2025-06-04 07:25:32] 2025-06-04 12:25:20,586 | INFO     | sum of square deviations: 338804492.0
[2025-06-04 07:25:32] 2025-06-04 12:25:20,586 | INFO     | sum of deviations: -13686350400.0
[2025-06-04 07:25:32] 2025-06-04 12:25:20,586 | INFO     | mean x: 1749036782.0
[2025-06-04 07:25:32] 2025-06-04 12:25:20,586 | INFO     | mean y: 2316491.873786408
[2025-06-04 07:25:32] 2025-06-04 12:25:20,586 | INFO     | -- intersect: 70656427715.81946
[2025-06-04 07:25:32] 2025-06-04 12:25:20,586 | INFO     | intersect: 70656427715.81946
[2025-06-04 07:25:32] 2025-06-04 12:25:20,587 | INFO     | chi2: 0.8287636994374353
[2025-06-04 07:25:32] 2025-06-04 12:25:20,587 | INFO     | current chi2=0.8287636994374353 (change=-0.13811791069811152 %)
[2025-06-04 07:25:32] 2025-06-04 12:25:20,587 | INFO     | left removable region: 20
[2025-06-04 07:25:32] 2025-06-04 12:25:20,587 | INFO     | sum of square deviations: 170944600.5
[2025-06-04 07:25:32] 2025-06-04 12:25:20,587 | INFO     | sum of deviations: -3747343917.5
[2025-06-04 07:25:32] 2025-06-04 12:25:20,587 | INFO     | mean x: 1749036751.5
[2025-06-04 07:25:32] 2025-06-04 12:25:20,587 | INFO     | mean y: 2328417.3292682925
[2025-06-04 07:25:32] 2025-06-04 12:25:20,587 | INFO     | -- intersect: 38343651939.96071
[2025-06-04 07:25:32] 2025-06-04 12:25:20,587 | INFO     | intersect: 38343651939.96071
[2025-06-04 07:25:32] 2025-06-04 12:25:20,588 | INFO     | chi2: 0.022590005029969426
[2025-06-04 07:25:32] 2025-06-04 12:25:20,588 | INFO     | -- intersect: 38343651939.96071
[2025-06-04 07:25:32] 2025-06-04 12:25:20,588 | INFO     | current memory leak: -21.92 B/s (using 82 data points, chi2=0.02)
[2025-06-04 07:25:32] 2025-06-04 12:25:20,588 | INFO     | ..............................
[2025-06-04 07:25:32] 2025-06-04 12:25:20,588 | INFO     | . Timing measurements:
[2025-06-04 07:25:32] 2025-06-04 12:25:20,588 | INFO     | . get job = 0 s
[2025-06-04 07:25:32] 2025-06-04 12:25:20,588 | INFO     | . initial setup = 2 s
[2025-06-04 07:25:32] 2025-06-04 12:25:20,588 | INFO     | . payload setup = 5 s
[2025-06-04 07:25:32] 2025-06-04 12:25:20,588 | INFO     | . stage-in = 0 s
[2025-06-04 07:25:32] 2025-06-04 12:25:20,588 | INFO     | . payload execution = 6851 s
[2025-06-04 07:25:32] 2025-06-04 12:25:20,588 | INFO     | . stage-out = 0 s
[2025-06-04 07:25:32] 2025-06-04 12:25:20,589 | INFO     | . log creation = 0 s
[2025-06-04 07:25:32] 2025-06-04 12:25:20,589 | INFO     | ..............................
[2025-06-04 07:25:32] 2025-06-04 12:25:20,663 | INFO     | 
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | job summary report
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | --------------------------------------------------
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | PanDA job id: 6678155198
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | task id: 45006595
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | errors: (none)
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | pilot state: finished 
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | transexitcode: 0
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | exeerrorcode: 0
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | exeerrordiag: 
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | exitcode: 0
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | exitmsg: OK
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | cpuconsumptiontime: 26346 s
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | nevents: 400
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | neventsw: 0
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | pid: 3401316
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | pgrp: 3401316
[2025-06-04 07:25:32] 2025-06-04 12:25:20,664 | INFO     | corecount: 4
[2025-06-04 07:25:32] 2025-06-04 12:25:20,665 | INFO     | event service: False
[2025-06-04 07:25:32] 2025-06-04 12:25:20,665 | INFO     | sizes: {0: 2405020, 1: 2405219, 4: 2405425, 11: 2405453, 6860: 2432584, 6861: 2432583, 6862: 2441722, 6864: 2441778, 6869: 2441948}
[2025-06-04 07:25:32] 2025-06-04 12:25:20,665 | INFO     | --------------------------------------------------
[2025-06-04 07:25:32] 2025-06-04 12:25:20,665 | INFO     | 
[2025-06-04 07:25:32] 2025-06-04 12:25:20,665 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2025-06-04 07:25:32] 2025-06-04 12:25:20,681 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,682 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,682 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,682 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,682 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,682 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,682 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,682 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,682 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,682 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,682 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,682 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,682 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,682 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,682 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,682 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,683 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,683 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 07:25:32] 2025-06-04 12:25:20,683 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,683 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 07:25:32] 2025-06-04 12:25:20,683 | INFO     | job 6678155198 has completed (purged errors)
[2025-06-04 07:25:32] 2025-06-04 12:25:20,683 | INFO     | overall cleanup function is called
[2025-06-04 07:25:32] 2025-06-04 12:25:21,689 | INFO     | --- collectZombieJob: --- 10, [3401316]
[2025-06-04 07:25:32] 2025-06-04 12:25:21,689 | INFO     | zombie collector waiting for pid 3401316
[2025-06-04 07:25:32] 2025-06-04 12:25:21,689 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 07:25:32] 2025-06-04 12:25:21,689 | INFO     | collected zombie processes
[2025-06-04 07:25:32] 2025-06-04 12:25:21,690 | INFO     | will attempt to kill all subprocesses of pid=3401316
[2025-06-04 07:25:32] 2025-06-04 12:25:21,863 | INFO     | process IDs to be killed: [3401316] (in reverse order)
[2025-06-04 07:25:32] 2025-06-04 12:25:21,928 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 07:25:32] 2025-06-04 12:25:21,928 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 07:25:32] 2025-06-04 12:25:21,934 | INFO     | did not find any defunct processes belonging to 3401316
[2025-06-04 07:25:32] 2025-06-04 12:25:21,938 | INFO     | did not find any defunct processes belonging to 3401316
[2025-06-04 07:25:32] 2025-06-04 12:25:21,938 | INFO     | ready for new job
[2025-06-04 07:25:32] 2025-06-04 12:25:21,938 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 07:25:32] 2025-06-04 12:25:21,940 | INFO     | **************************************
[2025-06-04 07:25:32] 2025-06-04 12:25:21,940 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 07:25:32] 2025-06-04 12:25:21,940 | INFO     | **************************************
[2025-06-04 07:25:32] 2025-06-04 12:25:21,940 | INFO     | 
[2025-06-04 07:25:32] 2025-06-04 12:25:21,942 | INFO     | architecture information:
[2025-06-04 07:25:32] 2025-06-04 12:25:21,942 | INFO     | executing command: cat /etc/os-release
[2025-06-04 07:25:32] 2025-06-04 12:25:21,954 | INFO     | cat /etc/os-release:
[2025-06-04 07:25:32] NAME="CentOS Linux"
[2025-06-04 07:25:32] VERSION="7 (Core)"
[2025-06-04 07:25:32] ID="centos"
[2025-06-04 07:25:32] ID_LIKE="rhel fedora"
[2025-06-04 07:25:32] VERSION_ID="7"
[2025-06-04 07:25:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 07:25:32] ANSI_COLOR="0;31"
[2025-06-04 07:25:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 07:25:32] HOME_URL="https://www.centos.org/"
[2025-06-04 07:25:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 07:25:32] 
[2025-06-04 07:25:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 07:25:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 07:25:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 07:25:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 07:25:32] 
[2025-06-04 07:25:32] 2025-06-04 12:25:21,955 | INFO     | **************************************
[2025-06-04 07:25:32] 2025-06-04 12:25:22,457 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2025-06-04 07:25:32] 2025-06-04 12:25:22,472 | INFO     | sufficient remaining disk space (1814174892032 B)
[2025-06-04 07:25:32] 2025-06-04 12:25:22,472 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 07:25:32] 2025-06-04 12:25:22,472 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 07:25:32] 2025-06-04 12:25:22,473 | INFO     | update_server=False
[2025-06-04 07:25:32] 2025-06-04 12:25:22,473 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 07:25:32] 2025-06-04 12:25:22,473 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:25:32] 2025-06-04 12:25:22,473 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 07:25:32] 2025-06-04 12:25:22,727 | INFO     | all data control threads have been joined
[2025-06-04 07:25:32] 2025-06-04 12:25:22,772 | INFO     | PID=3394511 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 07:25:32] 2025-06-04 12:25:22,772 | INFO     | .. there are 8 such processes running
[2025-06-04 07:25:32] 2025-06-04 12:25:22,772 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 07:25:32] 2025-06-04 12:25:22,772 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 07:25:32] 2025-06-04 12:25:22,772 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 07:25:32] 2025-06-04 12:25:22,852 | INFO     | all payload control threads have been joined
[2025-06-04 07:25:32] 2025-06-04 12:25:23,006 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:25:32] 2025-06-04 12:25:23,006 | INFO     | aborting loop
[2025-06-04 07:25:32] 2025-06-04 12:25:23,039 | INFO     | all job control threads have been joined
[2025-06-04 07:25:32] 2025-06-04 12:25:23,478 | INFO     | [job] retrieve thread has finished
[2025-06-04 07:25:32] 2025-06-04 12:25:23,478 | INFO     | [job] queue monitor thread has finished
[2025-06-04 07:25:32] 2025-06-04 12:25:23,678 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 07:25:32] 2025-06-04 12:25:23,732 | INFO     | [data] control thread has finished
[2025-06-04 07:25:32] 2025-06-04 12:25:23,856 | INFO     | [payload] control thread has finished
[2025-06-04 07:25:32] 2025-06-04 12:25:23,941 | INFO     | [job] validate thread has finished
[2025-06-04 07:25:32] 2025-06-04 12:25:23,964 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 07:25:32] 2025-06-04 12:25:24,011 | INFO     | [job] job monitor thread has finished
[2025-06-04 07:25:32] 2025-06-04 12:25:24,045 | INFO     | [job] control thread has finished
[2025-06-04 07:25:32] 2025-06-04 12:25:24,135 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 07:25:32] 2025-06-04 12:25:24,153 | INFO     | [payload] validate_post thread has finished
[2025-06-04 07:25:32] 2025-06-04 12:25:24,339 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 07:25:32] 2025-06-04 12:25:24,354 | INFO     | [payload] failed_post thread has finished
[2025-06-04 07:25:32] 2025-06-04 12:25:24,534 | INFO     | [data] copytool_in thread has finished
[2025-06-04 07:25:32] 2025-06-04 12:25:24,872 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 07:25:32] 2025-06-04 12:25:25,969 | INFO     | [data] copytool_out thread has finished
[2025-06-04 07:25:32] 2025-06-04 12:25:26,480 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 07:25:32] 2025-06-04 12:25:27,760 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129922941527872)>', '<ExcThread(monitor, started 129922469201664)>']
[2025-06-04 07:25:32] 2025-06-04 12:25:27,797 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 07:25:32] 2025-06-04 12:25:27,797 | INFO     | [monitor] control thread has ended
[2025-06-04 07:25:32] 2025-06-04 12:25:32,773 | INFO     | all workflow threads have been joined
[2025-06-04 07:25:32] 2025-06-04 12:25:32,773 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 07:25:32] 2025-06-04 12:25:32,774 | INFO     | traces error code: 0
[2025-06-04 07:25:32] 2025-06-04 12:25:32,774 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 07:25:32] 2025-06-04 12:25:32,853 [wrapper] ==== pilot stdout END ====
[2025-06-04 07:25:32] 2025-06-04 12:25:32,855 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 07:25:32] 2025-06-04 12:25:32,857 [wrapper] pilotpid: 3394511
[2025-06-04 07:25:32] 2025-06-04 12:25:32,859 [wrapper] Pilot exit status: 0
[2025-06-04 07:25:32] 2025-06-04 12:25:32,866 [wrapper] pandaids: 6678155198
[2025-06-04 07:25:32] 2025-06-04 12:25:32,905 [wrapper] cleanup supervisor_pilot 3606050 3394512
[2025-06-04 07:25:32] 2025-06-04 12:25:32,907 [wrapper] Test setup, not cleaning
[2025-06-04 07:25:32] 2025-06-04 12:25:32,909 [wrapper] apfmon messages muted
[2025-06-04 07:25:32] 2025-06-04 12:25:32,911 [wrapper] ==== wrapper stdout END ====
[2025-06-04 07:25:32] 2025-06-04 12:25:32,913 [wrapper] ==== wrapper stderr END ====
[2025-06-04 07:25:32]  *** Error codes and diagnostics ***
[2025-06-04 07:25:32]     "exeErrorCode": 0,
[2025-06-04 07:25:32]     "exeErrorDiag": "",
[2025-06-04 07:25:32]     "pilotErrorCode": 0,
[2025-06-04 07:25:32]     "pilotErrorDiag": "",
[2025-06-04 07:25:32]  *** Listing of results directory ***
[2025-06-04 07:25:32] total 393856
[2025-06-04 07:25:32] -rw-r--r-- 1 boinc boinc    495897 Jun  3 17:42 pilot3.tar.gz
[2025-06-04 07:25:32] -rwx------ 1 boinc boinc     37140 Jun  3 18:16 runpilot2-wrapper.sh
[2025-06-04 07:25:32] -rw-r--r-- 1 boinc boinc      5111 Jun  3 18:16 queuedata.json
[2025-06-04 07:25:32] -rw-r--r-- 1 boinc boinc       100 Jun  4 05:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 07:25:32] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 05:30 run_atlas
[2025-06-04 07:25:32] -rw-r--r-- 1 boinc boinc       105 Jun  4 05:30 job.xml
[2025-06-04 07:25:32] -rw-r--r-- 1 boinc boinc      9628 Jun  4 05:30 init_data.xml
[2025-06-04 07:25:32] -rw-r--r-- 2 boinc boinc 217423943 Jun  4 05:30 EVNT.45006593._001922.pool.root.1
[2025-06-04 07:25:32] -rw-r--r-- 2 boinc boinc     15093 Jun  4 05:30 start_atlas.sh
[2025-06-04 07:25:32] drwxrwx--x 2 boinc boinc      4096 Jun  4 05:30 shared
[2025-06-04 07:25:32] -rw-r--r-- 2 boinc boinc    508880 Jun  4 05:30 input.tar.gz
[2025-06-04 07:25:32] -rw-r--r-- 1 boinc boinc         0 Jun  4 05:30 boinc_lockfile
[2025-06-04 07:25:32] -rw-r--r-- 1 boinc boinc      2525 Jun  4 05:30 pandaJob.out
[2025-06-04 07:25:32] -rw------- 1 boinc boinc    986812 Jun  4 05:30 agis_schedconf.cvmfs.json
[2025-06-04 07:25:32] -rw------- 1 boinc boinc   1603667 Jun  4 05:30 agis_ddmendpoints.agis.ALL.json
[2025-06-04 07:25:32] drwx------ 4 boinc boinc      4096 Jun  4 05:30 pilot3
[2025-06-04 07:25:32] -rw------- 1 boinc boinc        95 Jun  4 07:24 pilot_heartbeat.json
[2025-06-04 07:25:32] -rw------- 1 boinc boinc 180196751 Jun  4 07:24 HITS.45006595._047866.pool.root.1
[2025-06-04 07:25:32] -rw-r--r-- 1 boinc boinc       530 Jun  4 07:24 boinc_task_state.xml
[2025-06-04 07:25:32] -rw------- 1 boinc boinc      1026 Jun  4 07:25 memory_monitor_summary.json
[2025-06-04 07:25:32] -rw------- 1 boinc boinc    257196 Jun  4 07:25 log.45006595._047866.job.log.tgz.1
[2025-06-04 07:25:32] -rw------- 1 boinc boinc      7674 Jun  4 07:25 heartbeat.json
[2025-06-04 07:25:32] -rw-r--r-- 1 boinc boinc      8192 Jun  4 07:25 boinc_mmap_file
[2025-06-04 07:25:32] -rw-r--r-- 1 boinc boinc        27 Jun  4 07:25 wrapper_checkpoint.txt
[2025-06-04 07:25:32] -rw------- 1 boinc boinc      4756 Jun  4 07:25 pilotlog.txt
[2025-06-04 07:25:32] -rw------- 1 boinc boinc    665533 Jun  4 07:25 log.45006595._047866.job.log.1
[2025-06-04 07:25:32] -rw------- 1 boinc boinc       357 Jun  4 07:25 output.list
[2025-06-04 07:25:32] -rw-r--r-- 1 boinc boinc       620 Jun  4 07:25 runtime_log
[2025-06-04 07:25:32] -rw------- 1 boinc boinc    942080 Jun  4 07:25 result.tar.gz
[2025-06-04 07:25:32] -rw------- 1 boinc boinc       653 Jun  4 07:25 yD0KDmS3pg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKEaKDmv5N2Um.diag
[2025-06-04 07:25:32] -rw-r--r-- 1 boinc boinc      8761 Jun  4 07:25 runtime_log.err
[2025-06-04 07:25:32] -rw-r--r-- 1 boinc boinc     20594 Jun  4 07:25 stderr.txt
[2025-06-04 07:25:32] HITS file was successfully produced:
[2025-06-04 07:25:32] -rw------- 1 boinc boinc 180196751 Jun  4 07:24 shared/HITS.pool.root.1
[2025-06-04 07:25:32]  *** Contents of shared directory: ***
[2025-06-04 07:25:32] total 389752
[2025-06-04 07:25:32] -rw-r--r-- 2 boinc boinc 217423943 Jun  4 05:30 ATLAS.root_0
[2025-06-04 07:25:32] -rw-r--r-- 2 boinc boinc     15093 Jun  4 05:30 start_atlas.sh
[2025-06-04 07:25:32] -rw-r--r-- 2 boinc boinc    508880 Jun  4 05:30 input.tar.gz
[2025-06-04 07:25:32] -rw------- 1 boinc boinc 180196751 Jun  4 07:24 HITS.pool.root.1
[2025-06-04 07:25:32] -rw------- 1 boinc boinc    942080 Jun  4 07:25 result.tar.gz
07:25:34 (3390724): run_atlas exited; CPU time 26445.495011
07:25:34 (3390724): called boinc_finish(0)

</stderr_txt>
]]>

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