Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:41:33 (1978028): wrapper (7.7.26015): starting
04:41:33 (1978028): wrapper: running run_atlas (--nthreads 10)
[2025-06-04 04:41:33] Arguments: --nthreads 10
[2025-06-04 04:41:33] Threads: 10
[2025-06-04 04:41:33] Checking for CVMFS
[2025-06-04 04:41:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 04:41:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 04:41:34] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 04:41:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 04:41:34] 2.12.6.0 814677 90416 889224 146773 3 270 15806771 21551105 16982 16776704 1 298269793 99.331 541525001 27514 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 04:41:34] CVMFS is ok
[2025-06-04 04:41:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 04:41:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 04:41:34] Further information can be found at the LHC@home message board.
[2025-06-04 04:41:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 04:41:34] Checking for apptainer binary...
[2025-06-04 04:41:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 04:41:34] Running /usr/bin/apptainer --version
[2025-06-04 04:41:34] apptainer version 1.4.1-1.el9
[2025-06-04 04:41:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 04:41:34] c-16-30.aglt2.org
[2025-06-04 04:41:34] apptainer works
[2025-06-04 04:41:34] Set ATHENA_PROC_NUMBER=10
[2025-06-04 04:41:34] Set ATHENA_CORE_NUMBER=10
[2025-06-04 04:41:34] Starting ATLAS job with PandaID=6678244544
[2025-06-04 04:41:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/condor/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:23:16]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:23:16] 2025-06-04 12:22:59,549 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:23:16] 2025-06-04 12:22:59,549 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:23:16] 2025-06-04 12:22:59,550 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:23:16] 2025-06-04 12:22:59,550 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:23:16] 2025-06-04 12:22:59,557 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:23:16] 2025-06-04 12:22:59,557 | INFO     | sum of square deviations: 3168478864.1198173
[2025-06-04 08:23:16] 2025-06-04 12:22:59,559 | INFO     | sum of deviations: 41448488180.8894
[2025-06-04 08:23:16] 2025-06-04 12:22:59,559 | INFO     | mean x: 1749033129.1152074
[2025-06-04 08:23:16] 2025-06-04 12:22:59,560 | INFO     | mean y: 2227339.124423963
[2025-06-04 08:23:16] 2025-06-04 12:22:59,560 | INFO     | -- intersect: -22877767159.51467
[2025-06-04 08:23:16] 2025-06-04 12:22:59,560 | INFO     | intersect: -22877767159.51467
[2025-06-04 08:23:16] 2025-06-04 12:22:59,560 | INFO     | chi2: 3.7759289714674718
[2025-06-04 08:23:16] 2025-06-04 12:22:59,561 | INFO     | sum of square deviations: 2954460058.283021
[2025-06-04 08:23:16] 2025-06-04 12:22:59,562 | INFO     | sum of deviations: 44056505965.91509
[2025-06-04 08:23:16] 2025-06-04 12:22:59,563 | INFO     | mean x: 1749032976.6132076
[2025-06-04 08:23:16] 2025-06-04 12:22:59,563 | INFO     | mean y: 2229173.816037736
[2025-06-04 08:23:16] 2025-06-04 12:22:59,563 | INFO     | -- intersect: -26079112339.909866
[2025-06-04 08:23:16] 2025-06-04 12:22:59,563 | INFO     | intersect: -26079112339.909866
[2025-06-04 08:23:16] 2025-06-04 12:22:59,563 | INFO     | chi2: 3.7564726558436585
[2025-06-04 08:23:16] 2025-06-04 12:22:59,564 | INFO     | current chi2=3.7564726558436585 (change=0.5152722885105476 %)
[2025-06-04 08:23:16] 2025-06-04 12:22:59,564 | INFO     | right removable region: 211
[2025-06-04 08:23:16] 2025-06-04 12:22:59,564 | INFO     | sum of square deviations: 2954457924.0518966
[2025-06-04 08:23:16] 2025-06-04 12:22:59,566 | INFO     | sum of deviations: -4581862481.452831
[2025-06-04 08:23:16] 2025-06-04 12:22:59,566 | INFO     | mean x: 1749033281.6179245
[2025-06-04 08:23:16] 2025-06-04 12:22:59,566 | INFO     | mean y: 2260021.6981132077
[2025-06-04 08:23:16] 2025-06-04 12:22:59,566 | INFO     | -- intersect: 2714713601.293152
[2025-06-04 08:23:16] 2025-06-04 12:22:59,567 | INFO     | intersect: 2714713601.293152
[2025-06-04 08:23:16] 2025-06-04 12:22:59,567 | INFO     | chi2: 1.389576890120214
[2025-06-04 08:23:16] 2025-06-04 12:22:59,567 | INFO     | current chi2=1.389576890120214 (change=63.19907231782036 %)
[2025-06-04 08:23:16] 2025-06-04 12:22:59,568 | INFO     | sum of square deviations: 2750297633.980659
[2025-06-04 08:23:16] 2025-06-04 12:22:59,569 | INFO     | sum of deviations: -31477914269.710136
[2025-06-04 08:23:16] 2025-06-04 12:22:59,569 | INFO     | mean x: 1749033434.1207728
[2025-06-04 08:23:16] 2025-06-04 12:22:59,570 | INFO     | mean y: 2280068.188405797
[2025-06-04 08:23:16] 2025-06-04 12:22:59,570 | INFO     | -- intersect: 20020449670.590633
[2025-06-04 08:23:16] 2025-06-04 12:22:59,570 | INFO     | intersect: 20020449670.590633
[2025-06-04 08:23:16] 2025-06-04 12:22:59,570 | INFO     | chi2: 0.5779992105114755
[2025-06-04 08:23:16] 2025-06-04 12:22:59,571 | INFO     | current chi2=0.5779992105114755 (change=58.4046615469064 %)
[2025-06-04 08:23:16] 2025-06-04 12:22:59,571 | INFO     | sum of square deviations: 2555765431.4059515
[2025-06-04 08:23:16] 2025-06-04 12:22:59,573 | INFO     | sum of deviations: -31641086306.514874
[2025-06-04 08:23:16] 2025-06-04 12:22:59,573 | INFO     | mean x: 1749033586.6237624
[2025-06-04 08:23:16] 2025-06-04 12:22:59,573 | INFO     | mean y: 2280100.9405940594
[2025-06-04 08:23:16] 2025-06-04 12:22:59,573 | INFO     | -- intersect: 21655801972.434067
[2025-06-04 08:23:16] 2025-06-04 12:22:59,573 | INFO     | intersect: 21655801972.434067
[2025-06-04 08:23:16] 2025-06-04 12:22:59,574 | INFO     | chi2: 0.4811541486466987
[2025-06-04 08:23:16] 2025-06-04 12:22:59,574 | INFO     | current chi2=0.4811541486466987 (change=16.755223900579026 %)
[2025-06-04 08:23:16] 2025-06-04 12:22:59,574 | INFO     | left removable region: 30
[2025-06-04 08:23:16] 2025-06-04 12:22:59,575 | INFO     | sum of square deviations: 1838664220.563533
[2025-06-04 08:23:16] 2025-06-04 12:22:59,576 | INFO     | sum of deviations: 359787967.96132636
[2025-06-04 08:23:16] 2025-06-04 12:22:59,576 | INFO     | mean x: 1749033861.116022
[2025-06-04 08:23:16] 2025-06-04 12:22:59,576 | INFO     | mean y: 2257687.6685082875
[2025-06-04 08:23:16] 2025-06-04 12:22:59,576 | INFO     | -- intersect: -339991501.5791171
[2025-06-04 08:23:16] 2025-06-04 12:22:59,576 | INFO     | intersect: -339991501.5791171
[2025-06-04 08:23:16] 2025-06-04 12:22:59,577 | INFO     | chi2: 0.23208300391453035
[2025-06-04 08:23:16] 2025-06-04 12:22:59,577 | INFO     | -- intersect: -339991501.5791171
[2025-06-04 08:23:16] 2025-06-04 12:22:59,577 | INFO     | current memory leak: 0.20 B/s (using 181 data points, chi2=0.23)
[2025-06-04 08:23:16] 2025-06-04 12:22:59,578 | INFO     | ..............................
[2025-06-04 08:23:16] 2025-06-04 12:22:59,578 | INFO     | . Timing measurements:
[2025-06-04 08:23:16] 2025-06-04 12:22:59,578 | INFO     | . get job = 0 s
[2025-06-04 08:23:16] 2025-06-04 12:22:59,578 | INFO     | . initial setup = 3 s
[2025-06-04 08:23:16] 2025-06-04 12:22:59,579 | INFO     | . payload setup = 10 s
[2025-06-04 08:23:16] 2025-06-04 12:22:59,579 | INFO     | . stage-in = 0 s
[2025-06-04 08:23:16] 2025-06-04 12:22:59,579 | INFO     | . payload execution = 13231 s
[2025-06-04 08:23:16] 2025-06-04 12:22:59,579 | INFO     | . stage-out = 2 s
[2025-06-04 08:23:16] 2025-06-04 12:22:59,579 | INFO     | . log creation = 0 s
[2025-06-04 08:23:16] 2025-06-04 12:22:59,579 | INFO     | ..............................
[2025-06-04 08:23:16] 2025-06-04 12:22:59,727 | INFO     | 
[2025-06-04 08:23:16] 2025-06-04 12:22:59,727 | INFO     | job summary report
[2025-06-04 08:23:16] 2025-06-04 12:22:59,727 | INFO     | --------------------------------------------------
[2025-06-04 08:23:16] 2025-06-04 12:22:59,727 | INFO     | PanDA job id: 6678244544
[2025-06-04 08:23:16] 2025-06-04 12:22:59,727 | INFO     | task id: 45006595
[2025-06-04 08:23:16] 2025-06-04 12:22:59,727 | INFO     | errors: (none)
[2025-06-04 08:23:16] 2025-06-04 12:22:59,728 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:23:16] 2025-06-04 12:22:59,728 | INFO     | pilot state: finished 
[2025-06-04 08:23:16] 2025-06-04 12:22:59,728 | INFO     | transexitcode: 0
[2025-06-04 08:23:16] 2025-06-04 12:22:59,728 | INFO     | exeerrorcode: 0
[2025-06-04 08:23:16] 2025-06-04 12:22:59,728 | INFO     | exeerrordiag: 
[2025-06-04 08:23:16] 2025-06-04 12:22:59,728 | INFO     | exitcode: 0
[2025-06-04 08:23:16] 2025-06-04 12:22:59,728 | INFO     | exitmsg: OK
[2025-06-04 08:23:16] 2025-06-04 12:22:59,728 | INFO     | cpuconsumptiontime: 71953 s
[2025-06-04 08:23:16] 2025-06-04 12:22:59,729 | INFO     | nevents: 400
[2025-06-04 08:23:16] 2025-06-04 12:22:59,729 | INFO     | neventsw: 0
[2025-06-04 08:23:16] 2025-06-04 12:22:59,729 | INFO     | pid: 1988275
[2025-06-04 08:23:16] 2025-06-04 12:22:59,729 | INFO     | pgrp: 1988275
[2025-06-04 08:23:16] 2025-06-04 12:22:59,729 | INFO     | corecount: 10
[2025-06-04 08:23:16] 2025-06-04 12:22:59,729 | INFO     | event service: False
[2025-06-04 08:23:16] 2025-06-04 12:22:59,729 | INFO     | sizes: {0: 2404971, 1: 2405170, 7: 2405376, 12: 2405404, 13245: 2435275, 13246: 2435274, 13249: 2445530, 13255: 2445644}
[2025-06-04 08:23:16] 2025-06-04 12:22:59,730 | INFO     | --------------------------------------------------
[2025-06-04 08:23:16] 2025-06-04 12:22:59,730 | INFO     | 
[2025-06-04 08:23:16] 2025-06-04 12:22:59,730 | INFO     | executing command: ls -lF /var/lib/condor/boinchome/slots/0
[2025-06-04 08:23:16] 2025-06-04 12:22:59,751 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,751 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,752 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,752 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,752 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,752 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,752 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,752 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,753 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,753 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,753 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,753 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,753 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,753 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,753 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,754 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,754 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,754 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:23:16] 2025-06-04 12:22:59,754 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,754 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:23:16] 2025-06-04 12:22:59,754 | INFO     | job 6678244544 has completed (purged errors)
[2025-06-04 08:23:16] 2025-06-04 12:22:59,755 | INFO     | overall cleanup function is called
[2025-06-04 08:23:16] 2025-06-04 12:23:00,762 | INFO     | --- collectZombieJob: --- 10, [1988275]
[2025-06-04 08:23:16] 2025-06-04 12:23:00,762 | INFO     | zombie collector waiting for pid 1988275
[2025-06-04 08:23:16] 2025-06-04 12:23:00,762 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:23:16] 2025-06-04 12:23:00,762 | INFO     | collected zombie processes
[2025-06-04 08:23:16] 2025-06-04 12:23:00,762 | INFO     | will attempt to kill all subprocesses of pid=1988275
[2025-06-04 08:23:16] 2025-06-04 12:23:01,272 | INFO     | process IDs to be killed: [1988275] (in reverse order)
[2025-06-04 08:23:16] 2025-06-04 12:23:01,410 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:23:16] 2025-06-04 12:23:01,411 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:23:16] 2025-06-04 12:23:01,429 | INFO     | did not find any defunct processes belonging to 1988275
[2025-06-04 08:23:16] 2025-06-04 12:23:01,449 | INFO     | did not find any defunct processes belonging to 1988275
[2025-06-04 08:23:16] 2025-06-04 12:23:01,449 | INFO     | ready for new job
[2025-06-04 08:23:16] 2025-06-04 12:23:01,449 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:23:16] 2025-06-04 12:23:01,451 | INFO     | **************************************
[2025-06-04 08:23:16] 2025-06-04 12:23:01,451 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 08:23:16] 2025-06-04 12:23:01,451 | INFO     | **************************************
[2025-06-04 08:23:16] 2025-06-04 12:23:01,452 | INFO     | 
[2025-06-04 08:23:16] 2025-06-04 12:23:01,466 | INFO     | architecture information:
[2025-06-04 08:23:16] 2025-06-04 12:23:01,466 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:23:16] 2025-06-04 12:23:01,484 | INFO     | cat /etc/os-release:
[2025-06-04 08:23:16] NAME="CentOS Linux"
[2025-06-04 08:23:16] VERSION="7 (Core)"
[2025-06-04 08:23:16] ID="centos"
[2025-06-04 08:23:16] ID_LIKE="rhel fedora"
[2025-06-04 08:23:16] VERSION_ID="7"
[2025-06-04 08:23:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:23:16] ANSI_COLOR="0;31"
[2025-06-04 08:23:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:23:16] HOME_URL="https://www.centos.org/"
[2025-06-04 08:23:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:23:16] 
[2025-06-04 08:23:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:23:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:23:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:23:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:23:16] 
[2025-06-04 08:23:16] 2025-06-04 12:23:01,484 | INFO     | **************************************
[2025-06-04 08:23:16] 2025-06-04 12:23:01,988 | INFO     | executing command: df -mP /var/lib/condor/boinchome/slots/0
[2025-06-04 08:23:16] 2025-06-04 12:23:02,017 | INFO     | sufficient remaining disk space (1855960645632 B)
[2025-06-04 08:23:16] 2025-06-04 12:23:02,017 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:23:16] 2025-06-04 12:23:02,018 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:23:16] 2025-06-04 12:23:02,018 | INFO     | update_server=False
[2025-06-04 08:23:16] 2025-06-04 12:23:02,018 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:23:16] 2025-06-04 12:23:02,018 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 08:23:16] 2025-06-04 12:23:02,019 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:23:16] 2025-06-04 12:23:02,019 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:23:16] 2025-06-04 12:23:02,019 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:23:16] 2025-06-04 12:23:02,148 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 08:23:16] 2025-06-04 12:23:02,148 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 08:23:16] 2025-06-04 12:23:02,148 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:23:16] 2025-06-04 12:23:02,148 | INFO     | will abort loop
[2025-06-04 08:23:16] 2025-06-04 12:23:02,266 | INFO     | all job control threads have been joined
[2025-06-04 08:23:16] 2025-06-04 12:23:02,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:23:16] 2025-06-04 12:23:03,023 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:23:16] 2025-06-04 12:23:03,106 | INFO     | all data control threads have been joined
[2025-06-04 08:23:16] 2025-06-04 12:23:03,143 | INFO     | all payload control threads have been joined
[2025-06-04 08:23:16] 2025-06-04 12:23:03,154 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:23:16] 2025-06-04 12:23:03,271 | INFO     | [job] control thread has finished
[2025-06-04 08:23:16] 2025-06-04 12:23:03,387 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:23:16] 2025-06-04 12:23:03,518 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:23:16] 2025-06-04 12:23:03,580 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:23:16] 2025-06-04 12:23:03,653 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:23:16] 2025-06-04 12:23:03,662 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:23:16] 2025-06-04 12:23:03,744 | INFO     | [job] validate thread has finished
[2025-06-04 08:23:16] 2025-06-04 12:23:03,989 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:23:16] 2025-06-04 12:23:04,104 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:23:16] 2025-06-04 12:23:04,110 | INFO     | [data] control thread has finished
[2025-06-04 08:23:16] 2025-06-04 12:23:04,149 | INFO     | [payload] control thread has finished
[2025-06-04 08:23:16] 2025-06-04 12:23:04,290 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:23:16] 2025-06-04 12:23:04,739 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:23:16] 2025-06-04 12:23:05,041 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:23:16] 2025-06-04 12:23:05,744 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:23:16] 2025-06-04 12:23:09,050 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:23:16] 2025-06-04 12:23:10,571 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139746303973184)>', '<ExcThread(monitor, started 139745661273856)>']
[2025-06-04 08:23:16] 2025-06-04 12:23:11,067 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:23:16] 2025-06-04 12:23:11,067 | INFO     | [monitor] control thread has ended
[2025-06-04 08:23:16] 2025-06-04 12:23:15,597 | INFO     | all workflow threads have been joined
[2025-06-04 08:23:16] 2025-06-04 12:23:15,597 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:23:16] 2025-06-04 12:23:15,598 | INFO     | traces error code: 0
[2025-06-04 08:23:16] 2025-06-04 12:23:15,598 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:23:16] 2025-06-04 12:23:15,809 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:23:16] 2025-06-04 12:23:15,812 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:23:16] 2025-06-04 12:23:15,816 [wrapper] pilotpid: 1981608
[2025-06-04 08:23:16] 2025-06-04 12:23:15,819 [wrapper] Pilot exit status: 0
[2025-06-04 08:23:16] 2025-06-04 12:23:15,875 [wrapper] pandaids: 6678244544
[2025-06-04 08:23:16] 2025-06-04 12:23:16,022 [wrapper] cleanup supervisor_pilot 2835288 1981609
[2025-06-04 08:23:16] 2025-06-04 12:23:16,030 [wrapper] Test setup, not cleaning
[2025-06-04 08:23:16] 2025-06-04 12:23:16,033 [wrapper] apfmon messages muted
[2025-06-04 08:23:16] 2025-06-04 12:23:16,037 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:23:16] 2025-06-04 12:23:16,041 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:23:16]  *** Error codes and diagnostics ***
[2025-06-04 08:23:16]     "exeErrorCode": 0,
[2025-06-04 08:23:16]     "exeErrorDiag": "",
[2025-06-04 08:23:16]     "pilotErrorCode": 0,
[2025-06-04 08:23:16]     "pilotErrorDiag": "",
[2025-06-04 08:23:16]  *** Listing of results directory ***
[2025-06-04 08:23:16] total 394204
[2025-06-04 08:23:16] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 19:58 pilot3.tar.gz
[2025-06-04 08:23:16] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 20:55 queuedata.json
[2025-06-04 08:23:16] -rwx------. 1 boincer umatlas     37140 Jun  3 20:55 runpilot2-wrapper.sh
[2025-06-04 08:23:16] -rw-r--r--. 1 boincer umatlas       100 Jun  4 04:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:23:16] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 04:41 run_atlas
[2025-06-04 08:23:16] -rw-r--r--. 1 boincer umatlas       105 Jun  4 04:41 job.xml
[2025-06-04 08:23:16] -rw-r--r--. 2 boincer umatlas 214156282 Jun  4 04:41 EVNT.45006593._001987.pool.root.1
[2025-06-04 08:23:16] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 04:41 start_atlas.sh
[2025-06-04 08:23:16] drwxrwx--x. 2 boincer umatlas        68 Jun  4 04:41 shared
[2025-06-04 08:23:16] -rw-r--r--. 2 boincer umatlas    508880 Jun  4 04:41 input.tar.gz
[2025-06-04 08:23:16] -rw-r--r--. 1 boincer umatlas         0 Jun  4 04:41 boinc_lockfile
[2025-06-04 08:23:16] -rw-r--r--. 1 boincer umatlas      2523 Jun  4 04:41 pandaJob.out
[2025-06-04 08:23:16] -rw-------. 1 boincer umatlas    986774 Jun  4 04:41 agis_schedconf.cvmfs.json
[2025-06-04 08:23:16] drwx------. 4 boincer umatlas      4096 Jun  4 04:41 pilot3
[2025-06-04 08:23:16] -rw-r--r--. 1 boincer umatlas      6549 Jun  4 08:21 init_data.xml
[2025-06-04 08:23:16] -rw-------. 1 boincer umatlas 182589209 Jun  4 08:22 HITS.45006595._049549.pool.root.1
[2025-06-04 08:23:16] -rw-r--r--. 1 boincer umatlas       531 Jun  4 08:22 boinc_task_state.xml
[2025-06-04 08:23:16] -rw-------. 1 boincer umatlas        95 Jun  4 08:22 pilot_heartbeat.json
[2025-06-04 08:23:16] -rw-------. 1 boincer umatlas      1036 Jun  4 08:22 memory_monitor_summary.json
[2025-06-04 08:23:16] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 08:22 boinc_mmap_file
[2025-06-04 08:23:16] -rw-r--r--. 1 boincer umatlas        28 Jun  4 08:22 wrapper_checkpoint.txt
[2025-06-04 08:23:16] -rw-------. 1 boincer umatlas   1598969 Jun  4 08:22 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:23:16] -rw-------. 1 boincer umatlas    403145 Jun  4 08:22 log.45006595._049549.job.log.tgz.1
[2025-06-04 08:23:16] -rw-------. 1 boincer umatlas      7709 Jun  4 08:22 heartbeat.json
[2025-06-04 08:23:16] -rw-------. 1 boincer umatlas      4675 Jun  4 08:23 pilotlog.txt
[2025-06-04 08:23:16] -rw-------. 1 boincer umatlas   1141672 Jun  4 08:23 log.45006595._049549.job.log.1
[2025-06-04 08:23:16] -rw-------. 1 boincer umatlas       357 Jun  4 08:23 output.list
[2025-06-04 08:23:16] -rw-r--r--. 1 boincer umatlas       620 Jun  4 08:23 runtime_log
[2025-06-04 08:23:16] -rw-------. 1 boincer umatlas   1566720 Jun  4 08:23 result.tar.gz
[2025-06-04 08:23:16] -rw-------. 1 boincer umatlas       656 Jun  4 08:23 UFgNDmXarg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcimKDmmOIzun.diag
[2025-06-04 08:23:16] -rw-r--r--. 1 boincer umatlas      8811 Jun  4 08:23 runtime_log.err
[2025-06-04 08:23:16] -rw-r--r--. 1 boincer umatlas     20963 Jun  4 08:23 stderr.txt
[2025-06-04 08:23:16] HITS file was successfully produced:
[2025-06-04 08:23:16] -rw-------. 1 boincer umatlas 182589209 Jun  4 08:22 shared/HITS.pool.root.1
[2025-06-04 08:23:16]  *** Contents of shared directory: ***
[2025-06-04 08:23:16] total 389504
[2025-06-04 08:23:16] -rw-r--r--. 2 boincer umatlas 214156282 Jun  4 04:41 ATLAS.root_0
[2025-06-04 08:23:16] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 04:41 start_atlas.sh
[2025-06-04 08:23:16] -rw-r--r--. 2 boincer umatlas    508880 Jun  4 04:41 input.tar.gz
[2025-06-04 08:23:16] -rw-------. 1 boincer umatlas 182589209 Jun  4 08:22 HITS.pool.root.1
[2025-06-04 08:23:16] -rw-------. 1 boincer umatlas   1566720 Jun  4 08:23 result.tar.gz
08:23:17 (1978028): run_atlas exited; CPU time 72604.776069
08:23:17 (1978028): called boinc_finish(0)

</stderr_txt>
]]>

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