Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:05:42 (15143): wrapper (7.7.26015): starting
19:05:42 (15143): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 19:05:42] Arguments: --nthreads 8
[2025-06-04 19:05:42] Threads: 8
[2025-06-04 19:05:42] Checking for CVMFS
[2025-06-04 19:05:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:05:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:05:43] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:05:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:05:44] 2.11.2.0 7179 33604 89844 146788 0 235 16762547 25165824 3796 130560 0 18503524 99.845 18691999 2470 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 19:05:44] CVMFS is ok
[2025-06-04 19:05:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:05:44] Checking for apptainer binary...
[2025-06-04 19:05:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:05:44] Running /usr/bin/apptainer --version
[2025-06-04 19:05:45] apptainer version 1.3.2-1.el7
[2025-06-04 19:05:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:05:57] cg-vwn286.simple-grid.lan
[2025-06-04 19:05:57] apptainer works
[2025-06-04 19:05:57] Set ATHENA_PROC_NUMBER=8
[2025-06-04 19:05:57] Set ATHENA_CORE_NUMBER=8
[2025-06-04 19:05:57] Starting ATLAS job with PandaID=6678286558
[2025-06-04 19:05:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 00:47:26]  *** The last 200 lines of the pilot log: ***
[2025-06-05 00:47:26] 2025-06-04 21:07:22,687 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 00:47:26] 2025-06-04 21:07:22,688 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 00:47:26] 2025-06-04 21:07:22,688 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 00:47:26] 2025-06-04 21:07:22,693 | INFO     | fitting pss+swap vs Time
[2025-06-05 00:47:26] 2025-06-04 21:07:22,697 | INFO     | sum of square deviations: 4024149870.0
[2025-06-05 00:47:26] 2025-06-04 21:07:22,699 | INFO     | sum of deviations: 27227351159.0
[2025-06-05 00:47:26] 2025-06-04 21:07:22,702 | INFO     | mean x: 1749063979.0
[2025-06-05 00:47:26] 2025-06-04 21:07:22,702 | INFO     | mean y: 2461287.719148936
[2025-06-05 00:47:26] 2025-06-04 21:07:22,702 | INFO     | -- intersect: -11831685226.260164
[2025-06-05 00:47:26] 2025-06-04 21:07:22,702 | INFO     | intersect: -11831685226.260164
[2025-06-05 00:47:26] 2025-06-04 21:07:22,702 | INFO     | chi2: 2.396115897674527
[2025-06-05 00:47:26] 2025-06-04 21:07:22,703 | INFO     | sum of square deviations: 3772712597.5
[2025-06-05 00:47:26] 2025-06-04 21:07:22,708 | INFO     | sum of deviations: 41959298228.0
[2025-06-05 00:47:26] 2025-06-04 21:07:22,708 | INFO     | mean x: 1749063826.5
[2025-06-05 00:47:26] 2025-06-04 21:07:22,708 | INFO     | mean y: 2470060.7217391306
[2025-06-05 00:47:26] 2025-06-04 21:07:22,708 | INFO     | -- intersect: -19450241700.18794
[2025-06-05 00:47:26] 2025-06-04 21:07:22,709 | INFO     | intersect: -19450241700.18794
[2025-06-05 00:47:26] 2025-06-04 21:07:22,709 | INFO     | chi2: 1.6237932643422452
[2025-06-05 00:47:26] 2025-06-04 21:07:22,709 | INFO     | current chi2=1.6237932643422452 (change=32.232273659293135 %)
[2025-06-05 00:47:26] 2025-06-04 21:07:22,709 | INFO     | sum of square deviations: 3531973200.0
[2025-06-05 00:47:26] 2025-06-04 21:07:22,711 | INFO     | sum of deviations: 40930142217.99999
[2025-06-05 00:47:26] 2025-06-04 21:07:22,715 | INFO     | mean x: 1749063674.0
[2025-06-05 00:47:26] 2025-06-04 21:07:22,715 | INFO     | mean y: 2469408.688888889
[2025-06-05 00:47:26] 2025-06-04 21:07:22,715 | INFO     | -- intersect: -20266490991.451626
[2025-06-05 00:47:26] 2025-06-04 21:07:22,715 | INFO     | intersect: -20266490991.451626
[2025-06-05 00:47:26] 2025-06-04 21:07:22,716 | INFO     | chi2: 1.624409195016398
[2025-06-05 00:47:26] 2025-06-04 21:07:22,716 | INFO     | current chi2=1.624409195016398 (change=-0.03793159435244743 %)
[2025-06-05 00:47:26] 2025-06-04 21:07:22,716 | INFO     | right removable region: 224
[2025-06-05 00:47:26] 2025-06-04 21:07:22,716 | INFO     | sum of square deviations: 3772712597.5
[2025-06-05 00:47:26] 2025-06-04 21:07:22,718 | INFO     | sum of deviations: -11912524293.5
[2025-06-05 00:47:26] 2025-06-04 21:07:22,718 | INFO     | mean x: 1749064131.5
[2025-06-05 00:47:26] 2025-06-04 21:07:22,719 | INFO     | mean y: 2484825.091304348
[2025-06-05 00:47:26] 2025-06-04 21:07:22,719 | INFO     | -- intersect: 5525240248.123029
[2025-06-05 00:47:26] 2025-06-04 21:07:22,719 | INFO     | intersect: 5525240248.123029
[2025-06-05 00:47:26] 2025-06-04 21:07:22,719 | INFO     | chi2: 0.8472325178143811
[2025-06-05 00:47:26] 2025-06-04 21:07:22,719 | INFO     | current chi2=0.8472325178143811 (change=64.64142161751711 %)
[2025-06-05 00:47:26] 2025-06-04 21:07:22,720 | INFO     | sum of square deviations: 3531973200.0
[2025-06-05 00:47:26] 2025-06-04 21:07:22,725 | INFO     | sum of deviations: -18439889104.0
[2025-06-05 00:47:26] 2025-06-04 21:07:22,725 | INFO     | mean x: 1749064284.0
[2025-06-05 00:47:26] 2025-06-04 21:07:22,725 | INFO     | mean y: 2488995.28
[2025-06-05 00:47:26] 2025-06-04 21:07:22,725 | INFO     | -- intersect: 9134084736.925821
[2025-06-05 00:47:26] 2025-06-04 21:07:22,725 | INFO     | intersect: 9134084736.925821
[2025-06-05 00:47:26] 2025-06-04 21:07:22,726 | INFO     | chi2: 0.7979506305208017
[2025-06-05 00:47:26] 2025-06-04 21:07:22,726 | INFO     | current chi2=0.7979506305208017 (change=5.816807813363049 %)
[2025-06-05 00:47:26] 2025-06-04 21:07:22,726 | INFO     | left removable region: 20
[2025-06-05 00:47:26] 2025-06-04 21:07:22,726 | INFO     | sum of square deviations: 2632440055.0
[2025-06-05 00:47:26] 2025-06-04 21:07:22,728 | INFO     | sum of deviations: -4659543132.999998
[2025-06-05 00:47:26] 2025-06-04 21:07:22,728 | INFO     | mean x: 1749064253.5
[2025-06-05 00:47:26] 2025-06-04 21:07:22,728 | INFO     | mean y: 2499705.401960784
[2025-06-05 00:47:26] 2025-06-04 21:07:22,728 | INFO     | -- intersect: 3098425979.6174216
[2025-06-05 00:47:26] 2025-06-04 21:07:22,728 | INFO     | intersect: 3098425979.6174216
[2025-06-05 00:47:26] 2025-06-04 21:07:22,729 | INFO     | chi2: 0.005332845013534487
[2025-06-05 00:47:26] 2025-06-04 21:07:22,729 | INFO     | -- intersect: 3098425979.6174216
[2025-06-05 00:47:26] 2025-06-04 21:07:22,729 | INFO     | current memory leak: -1.77 B/s (using 204 data points, chi2=0.01)
[2025-06-05 00:47:26] 2025-06-04 21:07:22,733 | INFO     | ..............................
[2025-06-05 00:47:26] 2025-06-04 21:07:22,733 | INFO     | . Timing measurements:
[2025-06-05 00:47:26] 2025-06-04 21:07:22,734 | INFO     | . get job = 0 s
[2025-06-05 00:47:26] 2025-06-04 21:07:22,734 | INFO     | . initial setup = 2 s
[2025-06-05 00:47:26] 2025-06-04 21:07:22,734 | INFO     | . payload setup = 17 s
[2025-06-05 00:47:26] 2025-06-04 21:07:22,734 | INFO     | . stage-in = 0 s
[2025-06-05 00:47:26] 2025-06-04 21:07:22,734 | INFO     | . payload execution = 14318 s
[2025-06-05 00:47:26] 2025-06-04 21:07:22,734 | INFO     | . stage-out = 3 s
[2025-06-05 00:47:26] 2025-06-04 21:07:22,734 | INFO     | . log creation = 1 s
[2025-06-05 00:47:26] 2025-06-04 21:07:22,734 | INFO     | ..............................
[2025-06-05 00:47:26] 2025-06-04 21:07:22,866 | INFO     | 
[2025-06-05 00:47:26] 2025-06-04 21:07:22,867 | INFO     | job summary report
[2025-06-05 00:47:26] 2025-06-04 21:07:22,867 | INFO     | --------------------------------------------------
[2025-06-05 00:47:26] 2025-06-04 21:07:22,867 | INFO     | PanDA job id: 6678286558
[2025-06-05 00:47:26] 2025-06-04 21:07:22,867 | INFO     | task id: 45006595
[2025-06-05 00:47:26] 2025-06-04 21:07:22,867 | INFO     | errors: (none)
[2025-06-05 00:47:26] 2025-06-04 21:07:22,867 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 00:47:26] 2025-06-04 21:07:22,867 | INFO     | pilot state: finished 
[2025-06-05 00:47:26] 2025-06-04 21:07:22,867 | INFO     | transexitcode: 0
[2025-06-05 00:47:26] 2025-06-04 21:07:22,867 | INFO     | exeerrorcode: 0
[2025-06-05 00:47:26] 2025-06-04 21:07:22,867 | INFO     | exeerrordiag: 
[2025-06-05 00:47:26] 2025-06-04 21:07:22,868 | INFO     | exitcode: 0
[2025-06-05 00:47:26] 2025-06-04 21:07:22,868 | INFO     | exitmsg: OK
[2025-06-05 00:47:26] 2025-06-04 21:07:22,868 | INFO     | cpuconsumptiontime: 53477 s
[2025-06-05 00:47:26] 2025-06-04 21:07:22,868 | INFO     | nevents: 400
[2025-06-05 00:47:26] 2025-06-04 21:07:22,868 | INFO     | neventsw: 0
[2025-06-05 00:47:26] 2025-06-04 21:07:22,868 | INFO     | pid: 28813
[2025-06-05 00:47:26] 2025-06-04 21:07:22,868 | INFO     | pgrp: 28813
[2025-06-05 00:47:26] 2025-06-04 21:07:22,868 | INFO     | corecount: 8
[2025-06-05 00:47:26] 2025-06-04 21:07:22,868 | INFO     | event service: False
[2025-06-05 00:47:26] 2025-06-04 21:07:22,868 | INFO     | sizes: {0: 2397171, 1: 2397370, 11: 2397576, 12: 2397604, 14340: 2427483, 14344: 2436424, 14347: 2436608, 14442: 2436778}
[2025-06-05 00:47:26] 2025-06-04 21:07:22,868 | INFO     | --------------------------------------------------
[2025-06-05 00:47:26] 2025-06-04 21:07:22,868 | INFO     | 
[2025-06-05 00:47:26] 2025-06-04 21:07:22,869 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-05 00:47:26] 2025-06-04 21:07:23,446 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,446 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,446 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,446 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,447 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,447 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,447 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,447 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,447 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,447 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,447 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,447 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,447 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,447 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,448 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,448 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,448 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,448 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 00:47:26] 2025-06-04 21:07:23,448 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,448 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 00:47:26] 2025-06-04 21:07:23,448 | INFO     | job 6678286558 has completed (purged errors)
[2025-06-05 00:47:26] 2025-06-04 21:07:23,448 | INFO     | overall cleanup function is called
[2025-06-05 00:47:26] 2025-06-04 21:07:24,457 | INFO     | --- collectZombieJob: --- 10, [28813]
[2025-06-05 00:47:26] 2025-06-04 21:07:24,458 | INFO     | zombie collector waiting for pid 28813
[2025-06-05 00:47:26] 2025-06-04 21:07:24,458 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 00:47:26] 2025-06-04 21:07:24,458 | INFO     | collected zombie processes
[2025-06-05 00:47:26] 2025-06-04 21:07:24,458 | INFO     | will attempt to kill all subprocesses of pid=28813
[2025-06-05 00:47:26] 2025-06-04 21:07:24,569 | INFO     | process IDs to be killed: [28813] (in reverse order)
[2025-06-05 00:47:26] 2025-06-04 21:07:25,134 | INFO     | PID=18833 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-05 00:47:26] 2025-06-04 21:07:25,134 | INFO     | .. there are 9 such processes running
[2025-06-05 00:47:26] 2025-06-04 21:07:25,548 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 00:47:26] 2025-06-04 21:07:25,549 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 00:47:26] 2025-06-04 21:07:25,558 | INFO     | did not find any defunct processes belonging to 28813
[2025-06-05 00:47:26] 2025-06-04 21:07:25,562 | INFO     | did not find any defunct processes belonging to 28813
[2025-06-05 00:47:26] 2025-06-04 21:07:25,562 | INFO     | ready for new job
[2025-06-05 00:47:26] 2025-06-04 21:07:25,562 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 00:47:26] 2025-06-04 21:07:25,564 | INFO     | **************************************
[2025-06-05 00:47:26] 2025-06-04 21:07:25,564 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 00:47:26] 2025-06-04 21:07:25,565 | INFO     | **************************************
[2025-06-05 00:47:26] 2025-06-04 21:07:25,565 | INFO     | 
[2025-06-05 00:47:26] 2025-06-04 21:07:25,565 | INFO     | pilot is running in a VM
[2025-06-05 00:47:26] 2025-06-04 21:07:25,565 | INFO     | architecture information:
[2025-06-05 00:47:26] 2025-06-04 21:07:25,581 | INFO     | executing command: cat /etc/os-release
[2025-06-05 00:47:26] 2025-06-04 21:07:25,939 | INFO     | cat /etc/os-release:
[2025-06-05 00:47:26] NAME="CentOS Linux"
[2025-06-05 00:47:26] VERSION="7 (Core)"
[2025-06-05 00:47:26] ID="centos"
[2025-06-05 00:47:26] ID_LIKE="rhel fedora"
[2025-06-05 00:47:26] VERSION_ID="7"
[2025-06-05 00:47:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 00:47:26] ANSI_COLOR="0;31"
[2025-06-05 00:47:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 00:47:26] HOME_URL="https://www.centos.org/"
[2025-06-05 00:47:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 00:47:26] 
[2025-06-05 00:47:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 00:47:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 00:47:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 00:47:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 00:47:26] 
[2025-06-05 00:47:26] 2025-06-04 21:07:25,939 | INFO     | **************************************
[2025-06-05 00:47:26] 2025-06-04 21:07:26,443 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-05 00:47:26] 2025-06-04 21:07:26,768 | INFO     | sufficient remaining disk space (497068015616 B)
[2025-06-05 00:47:26] 2025-06-04 21:07:26,768 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 00:47:26] 2025-06-04 21:07:26,768 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 00:47:26] 2025-06-04 21:07:26,768 | INFO     | update_server=False
[2025-06-05 00:47:26] 2025-06-04 21:07:26,768 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 00:47:26] 2025-06-04 21:07:26,770 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:47:26] 2025-06-04 21:07:26,770 | INFO     | aborting loop
[2025-06-05 00:47:26] 2025-06-04 21:07:26,811 | INFO     | all payload control threads have been joined
[2025-06-05 00:47:26] 2025-06-04 21:07:27,143 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 00:47:26] 2025-06-04 21:07:27,143 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 00:47:26] 2025-06-04 21:07:27,143 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 00:47:26] 2025-06-04 21:07:27,449 | INFO     | all job control threads have been joined
[2025-06-05 00:47:26] 2025-06-04 21:07:27,615 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 00:47:26] 2025-06-04 21:07:27,638 | INFO     | all data control threads have been joined
[2025-06-05 00:47:26] 2025-06-04 21:07:27,775 | INFO     | [job] retrieve thread has finished
[2025-06-05 00:47:26] 2025-06-04 21:07:27,776 | INFO     | [job] job monitor thread has finished
[2025-06-05 00:47:26] 2025-06-04 21:07:27,818 | INFO     | [payload] control thread has finished
[2025-06-05 00:47:26] 2025-06-04 21:07:27,828 | INFO     | [payload] validate_post thread has finished
[2025-06-05 00:47:26] 2025-06-04 21:07:27,880 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:47:26] 2025-06-04 21:07:28,121 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 00:47:26] 2025-06-04 21:07:28,284 | INFO     | [data] copytool_in thread has finished
[2025-06-05 00:47:26] 2025-06-04 21:07:28,398 | INFO     | [job] validate thread has finished
[2025-06-05 00:47:26] 2025-06-04 21:07:28,414 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 00:47:26] 2025-06-04 21:07:28,456 | INFO     | [job] control thread has finished
[2025-06-05 00:47:26] 2025-06-04 21:07:28,645 | INFO     | [data] control thread has finished
[2025-06-05 00:47:26] 2025-06-04 21:07:28,887 | INFO     | [job] queue monitor thread has finished
[2025-06-05 00:47:26] 2025-06-04 21:07:28,912 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 00:47:26] 2025-06-04 21:07:29,110 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 00:47:26] 2025-06-04 21:07:29,364 | INFO     | [payload] failed_post thread has finished
[2025-06-05 00:47:26] 2025-06-04 21:07:29,623 | INFO     | [data] copytool_out thread has finished
[2025-06-05 00:47:26] 2025-06-04 21:07:32,131 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 00:47:26] 2025-06-04 21:07:37,251 | INFO     | job.realtimelogging is not enabled
[2025-06-05 00:47:26] 2025-06-04 21:07:38,256 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 00:47:26] 2025-06-04 21:07:38,725 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140607231493952)>', '<ExcThread(monitor, started 140606424741632)>']
[2025-06-05 00:47:26] 2025-06-04 21:07:39,214 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 00:47:26] 2025-06-04 21:07:39,215 | INFO     | [monitor] control thread has ended
[2025-06-05 00:47:26] 2025-06-04 21:07:43,750 | INFO     | all workflow threads have been joined
[2025-06-05 00:47:26] 2025-06-04 21:07:43,751 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 00:47:26] 2025-06-04 21:07:43,751 | INFO     | traces error code: 0
[2025-06-05 00:47:26] 2025-06-04 21:07:43,751 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 00:47:26] 2025-06-04 21:07:44,093 [wrapper] ==== pilot stdout END ====
[2025-06-05 00:47:26] 2025-06-04 21:07:44,211 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 00:47:26] 2025-06-04 21:07:44,318 [wrapper] pilotpid: 18833
[2025-06-05 00:47:26] 2025-06-04 21:07:44,377 [wrapper] Pilot exit status: 0
[2025-06-05 00:47:26] 2025-06-04 21:07:44,799 [wrapper] pandaids: 6678286558
[2025-06-05 00:47:26] 2025-06-04 21:07:45,738 [wrapper] cleanup supervisor_pilot  6396 18834
[2025-06-05 00:47:26] 2025-06-04 21:07:45,839 [wrapper] Test setup, not cleaning
[2025-06-05 00:47:26] 2025-06-04 21:07:45,921 [wrapper] apfmon messages muted
[2025-06-05 00:47:26] 2025-06-04 21:07:45,966 [wrapper] ==== wrapper stdout END ====
[2025-06-05 00:47:26] 2025-06-04 21:07:46,014 [wrapper] ==== wrapper stderr END ====
[2025-06-05 00:47:26]  *** Error codes and diagnostics ***
[2025-06-05 00:47:26]     "exeErrorCode": 0,
[2025-06-05 00:47:26]     "exeErrorDiag": "",
[2025-06-05 00:47:26]     "pilotErrorCode": 0,
[2025-06-05 00:47:26]     "pilotErrorDiag": "",
[2025-06-05 00:47:26]  *** Listing of results directory ***
[2025-06-05 00:47:26] total 394816
[2025-06-05 00:47:26] -rw-r--r--. 1 boinc boinc    495897 Jun  4 04:52 pilot3.tar.gz
[2025-06-05 00:47:26] -rw-r--r--. 1 boinc boinc      5111 Jun  4 05:13 queuedata.json
[2025-06-05 00:47:26] -rwx------. 1 boinc boinc     37140 Jun  4 05:13 runpilot2-wrapper.sh
[2025-06-05 00:47:26] -rw-r--r--. 1 boinc boinc       100 Jun  4 19:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 00:47:26] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 19:05 run_atlas
[2025-06-05 00:47:26] -rw-r--r--. 1 boinc boinc       105 Jun  4 19:05 job.xml
[2025-06-05 00:47:26] -rw-r--r--. 1 boinc boinc      6391 Jun  4 19:05 init_data.xml
[2025-06-05 00:47:26] -rw-r--r--. 2 boinc boinc 213226630 Jun  4 19:05 EVNT.45006593._002062.pool.root.1
[2025-06-05 00:47:26] -rw-r--r--. 2 boinc boinc     15093 Jun  4 19:05 start_atlas.sh
[2025-06-05 00:47:26] drwxrwx--x. 2 boinc boinc        68 Jun  4 19:05 shared
[2025-06-05 00:47:26] -rw-r--r--. 2 boinc boinc    508881 Jun  4 19:05 input.tar.gz
[2025-06-05 00:47:26] -rw-r--r--. 1 boinc boinc         0 Jun  4 19:05 boinc_lockfile
[2025-06-05 00:47:26] -rw-r--r--. 1 boinc boinc      2525 Jun  4 19:05 pandaJob.out
[2025-06-05 00:47:26] -rw-------. 1 boinc boinc    990984 Jun  4 19:06 agis_schedconf.cvmfs.json
[2025-06-05 00:47:26] drwx------. 4 boinc boinc      4096 Jun  4 19:06 pilot3
[2025-06-05 00:47:26] -rw-------. 1 boinc boinc 183947190 Jun  4 23:04 HITS.45006595._051471.pool.root.1
[2025-06-05 00:47:26] -rw-r--r--. 1 boinc boinc       531 Jun  4 23:04 boinc_task_state.xml
[2025-06-05 00:47:26] -rw-------. 1 boinc boinc      1021 Jun  4 23:05 memory_monitor_summary.json
[2025-06-05 00:47:26] -rw-------. 1 boinc boinc   1598969 Jun  4 23:05 agis_ddmendpoints.agis.ALL.json
[2025-06-05 00:47:26] -rw-------. 1 boinc boinc    394061 Jun  4 23:05 log.45006595._051471.job.log.tgz.1
[2025-06-05 00:47:26] -rw-------. 1 boinc boinc        95 Jun  4 23:06 pilot_heartbeat.json
[2025-06-05 00:47:26] -rw-------. 1 boinc boinc      7693 Jun  4 23:07 heartbeat.json
[2025-06-05 00:47:26] -rw-------. 1 boinc boinc      4488 Jun  4 23:07 pilotlog.txt
[2025-06-05 00:47:26] -rw-------. 1 boinc boinc   1251124 Jun  4 23:07 log.45006595._051471.job.log.1
[2025-06-05 00:47:26] -rw-------. 1 boinc boinc       357 Jun  4 23:07 output.list
[2025-06-05 00:47:26] -rw-r--r--. 1 boinc boinc       620 Jun  4 23:07 runtime_log
[2025-06-05 00:47:26] -rw-------. 1 boinc boinc   1669120 Jun  4 23:07 result.tar.gz
[2025-06-05 00:47:26] -rw-------. 1 boinc boinc       656 Jun  4 23:07 S1gKDmaktg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKcaKDmLNbWAn.diag
[2025-06-05 00:47:26] -rw-r--r--. 1 boinc boinc      8659 Jun  4 23:07 runtime_log.err
[2025-06-05 00:47:26] -rw-r--r--. 1 boinc boinc      8192 Jun  5 00:47 boinc_mmap_file
[2025-06-05 00:47:26] -rw-r--r--. 1 boinc boinc        28 Jun  5 00:47 wrapper_checkpoint.txt
[2025-06-05 00:47:26] -rw-r--r--. 1 boinc boinc     20519 Jun  5 00:47 stderr.txt
[2025-06-05 00:47:26] HITS file was successfully produced:
[2025-06-05 00:47:26] -rw-------. 1 boinc boinc 183947190 Jun  4 23:04 shared/HITS.pool.root.1
[2025-06-05 00:47:26]  *** Contents of shared directory: ***
[2025-06-05 00:47:26] total 390016
[2025-06-05 00:47:26] -rw-r--r--. 2 boinc boinc 213226630 Jun  4 19:05 ATLAS.root_0
[2025-06-05 00:47:26] -rw-r--r--. 2 boinc boinc     15093 Jun  4 19:05 start_atlas.sh
[2025-06-05 00:47:26] -rw-r--r--. 2 boinc boinc    508881 Jun  4 19:05 input.tar.gz
[2025-06-05 00:47:26] -rw-------. 1 boinc boinc 183947190 Jun  4 23:04 HITS.pool.root.1
[2025-06-05 00:47:26] -rw-------. 1 boinc boinc   1669120 Jun  4 23:07 result.tar.gz
00:47:28 (15143): run_atlas exited; CPU time 53666.530540
00:47:28 (15143): called boinc_finish(0)

</stderr_txt>
]]>

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