Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:35:51 (3505714): wrapper (7.7.26015): starting
04:35:51 (3505714): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 04:35:51] Arguments: --nthreads 8
[2025-06-04 04:35:51] Threads: 8
[2025-06-04 04:35:51] Checking for CVMFS
[2025-06-04 04:35:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 04:35:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 04:35:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 04:35:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 04:35:51] 2.12.6.0 3854649 23040 459964 146773 1 103 24988356 32935937 9778 16776704 0 109525994 99.675 101385845 32685 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 04:35:51] CVMFS is ok
[2025-06-04 04:35:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 04:35:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 04:35:51] Further information can be found at the LHC@home message board.
[2025-06-04 04:35:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 04:35:51] Checking for apptainer binary...
[2025-06-04 04:35:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 04:35:51] Running /usr/bin/apptainer --version
[2025-06-04 04:35:51] apptainer version 1.4.1-1.el9
[2025-06-04 04:35:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 04:35:51] c6-4-5-3.aglt2.org
[2025-06-04 04:35:51] apptainer works
[2025-06-04 04:35:51] Set ATHENA_PROC_NUMBER=8
[2025-06-04 04:35:51] Set ATHENA_CORE_NUMBER=8
[2025-06-04 04:35:51] Starting ATLAS job with PandaID=6678287055
[2025-06-04 04:35:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 05:31:37]  *** The last 200 lines of the pilot log: ***
[2025-06-04 05:31:37]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678287055/log.45006595._051702.job.log.tgz.1
[2025-06-04 05:31:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b1/19/log.45006595._051702.job.log.tgz.1
[2025-06-04 05:31:37]  workdir=None
[2025-06-04 05:31:37] ]
[2025-06-04 05:31:37] 2025-06-04 09:31:10,563 | INFO     | transferring file log.45006595._051702.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678287055/log.45006595._051702.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 05:31:37] 2025-06-04 09:31:10,563 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678287055/log.45006595._051702.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._051702.job
[2025-06-04 05:31:37] 2025-06-04 09:31:10,580 | INFO     | adding to output.list: log.45006595._051702.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b1/19/log.45006595._051702.job.log.tg
[2025-06-04 05:31:37] 2025-06-04 09:31:10,580 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 05:31:37] 2025-06-04 09:31:10,581 | INFO     | summary of transferred files:
[2025-06-04 05:31:37] 2025-06-04 09:31:10,581 | INFO     |  -- lfn=log.45006595._051702.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 05:31:37] 2025-06-04 09:31:10,581 | INFO     | stage-out finished correctly
[2025-06-04 05:31:37] 2025-06-04 09:31:11,148 | INFO     | PID=3509585 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 05:31:37] 2025-06-04 09:31:11,149 | INFO     | .. there are 17 such processes running
[2025-06-04 05:31:37] 2025-06-04 09:31:12,237 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 05:31:37] 2025-06-04 09:31:13,528 | WARNING  | process 3517957 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 05:31:37] 2025-06-04 09:31:13,529 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678287055/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 05:31:37] 2025-06-04 09:31:13,529 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678287055/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 05:31:37] 2025-06-04 09:31:13,530 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3698540 B
[2025-06-04 05:31:37] 2025-06-04 09:31:13,531 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15787 B
[2025-06-04 05:31:37] 2025-06-04 09:31:13,531 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 05:31:37] 2025-06-04 09:31:13,550 | INFO     | sufficient remaining disk space (76072091648 B)
[2025-06-04 05:31:37] 2025-06-04 09:31:13,551 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-04 05:31:37] 2025-06-04 09:31:13,552 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6678287055: 3988131 B (within 2537553920 B limit)
[2025-06-04 05:31:37] 2025-06-04 09:31:13,552 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6678287055/HITS.45006595._051702.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-04 05:31:37] 2025-06-04 09:31:13,552 | INFO     | total size of present files: 0 B (workdir size: 3988131 B)
[2025-06-04 05:31:37] 2025-06-04 09:31:13,552 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6678287055/HITS.45006595._051702.pool.root.1 since it does not exist
[2025-06-04 05:31:37] 2025-06-04 09:31:13,725 | INFO     | number of running child processes to parent process 3517957: 1
[2025-06-04 05:31:37] 2025-06-04 09:31:13,726 | INFO     | maximum number of monitored processes: 6
[2025-06-04 05:31:37] 2025-06-04 09:31:15,060 | INFO     | job 6678287055 has state=finished
[2025-06-04 05:31:37] 2025-06-04 09:31:15,060 | INFO     | preparing for final server update for job 6678287055 in state='finished'
[2025-06-04 05:31:37] 2025-06-04 09:31:15,061 | INFO     | this job has now completed (state=finished)
[2025-06-04 05:31:37] 2025-06-04 09:31:15,061 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 05:31:37] 2025-06-04 09:31:15,061 | INFO     | log transfer has been attempted: DONE
[2025-06-04 05:31:37] 2025-06-04 09:31:15,061 | INFO     | job 6678287055 has finished - writing final server update
[2025-06-04 05:31:37] 2025-06-04 09:31:15,062 | INFO     | total number of processed events: 400 (read)
[2025-06-04 05:31:37] 2025-06-04 09:31:15,078 | INFO     | executing command: lscpu
[2025-06-04 05:31:37] 2025-06-04 09:31:15,149 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 05:31:37] 2025-06-04 09:31:16,228 | INFO     | monitor loop #250: job 0:6678287055 is in state 'finished'
[2025-06-04 05:31:37] 2025-06-04 09:31:16,229 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:31:37] 2025-06-04 09:31:18,242 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 05:31:37] 2025-06-04 09:31:18,243 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678287055/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 05:31:37] 2025-06-04 09:31:18,243 | INFO     | extracted standard info from prmon json
[2025-06-04 05:31:37] 2025-06-04 09:31:18,243 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 05:31:37] 2025-06-04 09:31:18,244 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 05:31:37] 2025-06-04 09:31:18,244 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 05:31:37] 2025-06-04 09:31:18,244 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 05:31:37] 2025-06-04 09:31:18,245 | INFO     | fitting pss+swap vs Time
[2025-06-04 05:31:37] 2025-06-04 09:31:18,246 | INFO     | sum of square deviations: 32179208.0
[2025-06-04 05:31:37] 2025-06-04 09:31:18,246 | INFO     | sum of deviations: 644996859.0000008
[2025-06-04 05:31:37] 2025-06-04 09:31:18,246 | INFO     | mean x: 1749027891.0
[2025-06-04 05:31:37] 2025-06-04 09:31:18,246 | INFO     | mean y: 2378912.1063829786
[2025-06-04 05:31:37] 2025-06-04 09:31:18,246 | INFO     | -- intersect: -35054962959.029655
[2025-06-04 05:31:37] 2025-06-04 09:31:18,246 | INFO     | intersect: -35054962959.029655
[2025-06-04 05:31:37] 2025-06-04 09:31:18,246 | INFO     | chi2: 0.7782278555678774
[2025-06-04 05:31:37] 2025-06-04 09:31:18,246 | INFO     | -- intersect: -35054962959.029655
[2025-06-04 05:31:37] 2025-06-04 09:31:18,247 | INFO     | current memory leak: 20.04 B/s (using 47 data points, chi2=0.78)
[2025-06-04 05:31:37] 2025-06-04 09:31:18,247 | INFO     | ..............................
[2025-06-04 05:31:37] 2025-06-04 09:31:18,247 | INFO     | . Timing measurements:
[2025-06-04 05:31:37] 2025-06-04 09:31:18,247 | INFO     | . get job = 0 s
[2025-06-04 05:31:37] 2025-06-04 09:31:18,247 | INFO     | . initial setup = 2 s
[2025-06-04 05:31:37] 2025-06-04 09:31:18,247 | INFO     | . payload setup = 5 s
[2025-06-04 05:31:37] 2025-06-04 09:31:18,247 | INFO     | . stage-in = 0 s
[2025-06-04 05:31:37] 2025-06-04 09:31:18,247 | INFO     | . payload execution = 3285 s
[2025-06-04 05:31:37] 2025-06-04 09:31:18,247 | INFO     | . stage-out = 0 s
[2025-06-04 05:31:37] 2025-06-04 09:31:18,247 | INFO     | . log creation = 0 s
[2025-06-04 05:31:37] 2025-06-04 09:31:18,247 | INFO     | ..............................
[2025-06-04 05:31:37] 2025-06-04 09:31:18,332 | INFO     | 
[2025-06-04 05:31:37] 2025-06-04 09:31:18,332 | INFO     | job summary report
[2025-06-04 05:31:37] 2025-06-04 09:31:18,332 | INFO     | --------------------------------------------------
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | PanDA job id: 6678287055
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | task id: 45006595
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | errors: (none)
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | pilot state: finished 
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | transexitcode: 0
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | exeerrorcode: 0
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | exeerrordiag: 
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | exitcode: 0
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | exitmsg: OK
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | cpuconsumptiontime: 21414 s
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | nevents: 400
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | neventsw: 0
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | pid: 3517957
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | pgrp: 3517957
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | corecount: 8
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | event service: False
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | sizes: {0: 2405184, 3: 2405390, 11: 2405418, 3294: 2430887, 3296: 2439828, 3297: 2439884, 3303: 2440306}
[2025-06-04 05:31:37] 2025-06-04 09:31:18,333 | INFO     | --------------------------------------------------
[2025-06-04 05:31:37] 2025-06-04 09:31:18,334 | INFO     | 
[2025-06-04 05:31:37] 2025-06-04 09:31:18,334 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 05:31:37] 2025-06-04 09:31:18,352 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,352 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,352 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,352 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,352 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,352 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,353 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,353 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,353 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,353 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,353 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,353 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,353 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,353 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,353 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,353 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,353 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,353 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 05:31:37] 2025-06-04 09:31:18,353 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,353 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 05:31:37] 2025-06-04 09:31:18,353 | INFO     | job 6678287055 has completed (purged errors)
[2025-06-04 05:31:37] 2025-06-04 09:31:18,354 | INFO     | overall cleanup function is called
[2025-06-04 05:31:37] 2025-06-04 09:31:19,361 | INFO     | --- collectZombieJob: --- 10, [3517957]
[2025-06-04 05:31:37] 2025-06-04 09:31:19,361 | INFO     | zombie collector waiting for pid 3517957
[2025-06-04 05:31:37] 2025-06-04 09:31:19,362 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 05:31:37] 2025-06-04 09:31:19,362 | INFO     | collected zombie processes
[2025-06-04 05:31:37] 2025-06-04 09:31:19,362 | INFO     | will attempt to kill all subprocesses of pid=3517957
[2025-06-04 05:31:37] 2025-06-04 09:31:19,503 | INFO     | process IDs to be killed: [3517957] (in reverse order)
[2025-06-04 05:31:37] 2025-06-04 09:31:19,553 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 05:31:37] 2025-06-04 09:31:19,553 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 05:31:37] 2025-06-04 09:31:19,565 | INFO     | did not find any defunct processes belonging to 3517957
[2025-06-04 05:31:37] 2025-06-04 09:31:19,572 | INFO     | did not find any defunct processes belonging to 3517957
[2025-06-04 05:31:37] 2025-06-04 09:31:19,572 | INFO     | ready for new job
[2025-06-04 05:31:37] 2025-06-04 09:31:19,572 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 05:31:37] 2025-06-04 09:31:19,573 | INFO     | **************************************
[2025-06-04 05:31:37] 2025-06-04 09:31:19,573 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 05:31:37] 2025-06-04 09:31:19,573 | INFO     | **************************************
[2025-06-04 05:31:37] 2025-06-04 09:31:19,573 | INFO     | 
[2025-06-04 05:31:37] 2025-06-04 09:31:19,587 | INFO     | architecture information:
[2025-06-04 05:31:37] 2025-06-04 09:31:19,588 | INFO     | executing command: cat /etc/os-release
[2025-06-04 05:31:37] 2025-06-04 09:31:19,601 | INFO     | cat /etc/os-release:
[2025-06-04 05:31:37] NAME="CentOS Linux"
[2025-06-04 05:31:37] VERSION="7 (Core)"
[2025-06-04 05:31:37] ID="centos"
[2025-06-04 05:31:37] ID_LIKE="rhel fedora"
[2025-06-04 05:31:37] VERSION_ID="7"
[2025-06-04 05:31:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 05:31:37] ANSI_COLOR="0;31"
[2025-06-04 05:31:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 05:31:37] HOME_URL="https://www.centos.org/"
[2025-06-04 05:31:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 05:31:37] 
[2025-06-04 05:31:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 05:31:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 05:31:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 05:31:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 05:31:37] 
[2025-06-04 05:31:37] 2025-06-04 09:31:19,601 | INFO     | **************************************
[2025-06-04 05:31:37] 2025-06-04 09:31:20,104 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 05:31:37] 2025-06-04 09:31:20,114 | INFO     | sufficient remaining disk space (76076285952 B)
[2025-06-04 05:31:37] 2025-06-04 09:31:20,115 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 05:31:37] 2025-06-04 09:31:20,115 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 05:31:37] 2025-06-04 09:31:20,115 | INFO     | update_server=False
[2025-06-04 05:31:37] 2025-06-04 09:31:20,115 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 05:31:37] 2025-06-04 09:31:20,115 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:31:37] 2025-06-04 09:31:20,115 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:31:37] 2025-06-04 09:31:20,115 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 05:31:37] 2025-06-04 09:31:20,116 | INFO     | aborting loop
[2025-06-04 05:31:37] 2025-06-04 09:31:20,116 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 05:31:37] 2025-06-04 09:31:20,116 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 05:31:37] 2025-06-04 09:31:20,116 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 05:31:37] 2025-06-04 09:31:20,911 | INFO     | all data control threads have been joined
[2025-06-04 05:31:37] 2025-06-04 09:31:21,120 | INFO     | [job] queue monitor thread has finished
[2025-06-04 05:31:37] 2025-06-04 09:31:21,121 | INFO     | [job] retrieve thread has finished
[2025-06-04 05:31:37] 2025-06-04 09:31:21,121 | INFO     | [job] job monitor thread has finished
[2025-06-04 05:31:37] 2025-06-04 09:31:21,140 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 05:31:37] 2025-06-04 09:31:21,287 | INFO     | [data] copytool_in thread has finished
[2025-06-04 05:31:37] 2025-06-04 09:31:21,413 | INFO     | [payload] validate_post thread has finished
[2025-06-04 05:31:37] 2025-06-04 09:31:21,517 | INFO     | all job control threads have been joined
[2025-06-04 05:31:37] 2025-06-04 09:31:21,527 | INFO     | all payload control threads have been joined
[2025-06-04 05:31:37] 2025-06-04 09:31:21,799 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 05:31:37] 2025-06-04 09:31:21,917 | INFO     | [data] control thread has finished
[2025-06-04 05:31:37] 2025-06-04 09:31:22,280 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 05:31:37] 2025-06-04 09:31:22,289 | INFO     | [job] validate thread has finished
[2025-06-04 05:31:37] 2025-06-04 09:31:22,465 | INFO     | [payload] failed_post thread has finished
[2025-06-04 05:31:37] 2025-06-04 09:31:22,510 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 05:31:37] 2025-06-04 09:31:22,523 | INFO     | [job] control thread has finished
[2025-06-04 05:31:37] 2025-06-04 09:31:22,533 | INFO     | [payload] control thread has finished
[2025-06-04 05:31:37] 2025-06-04 09:31:22,801 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 05:31:37] 2025-06-04 09:31:23,146 | INFO     | [data] copytool_out thread has finished
[2025-06-04 05:31:37] 2025-06-04 09:31:26,804 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 05:31:37] 2025-06-04 09:31:30,188 | INFO     | job.realtimelogging is not enabled
[2025-06-04 05:31:37] 2025-06-04 09:31:31,193 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 05:31:37] 2025-06-04 09:31:32,628 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139680072976192)>', '<ExcThread(monitor, started 139679433217792)>']
[2025-06-04 05:31:37] 2025-06-04 09:31:33,176 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 05:31:37] 2025-06-04 09:31:33,176 | INFO     | [monitor] control thread has ended
[2025-06-04 05:31:37] 2025-06-04 09:31:37,651 | INFO     | all workflow threads have been joined
[2025-06-04 05:31:37] 2025-06-04 09:31:37,652 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 05:31:37] 2025-06-04 09:31:37,652 | INFO     | traces error code: 0
[2025-06-04 05:31:37] 2025-06-04 09:31:37,652 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 05:31:37] 2025-06-04 09:31:37,767 [wrapper] ==== pilot stdout END ====
[2025-06-04 05:31:37] 2025-06-04 09:31:37,770 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 05:31:37] 2025-06-04 09:31:37,772 [wrapper] pilotpid: 3509585
[2025-06-04 05:31:37] 2025-06-04 09:31:37,773 [wrapper] Pilot exit status: 0
[2025-06-04 05:31:37] 2025-06-04 09:31:37,782 [wrapper] pandaids: 6678287055
[2025-06-04 05:31:37] 2025-06-04 09:31:37,816 [wrapper] cleanup supervisor_pilot 3645117 3509586
[2025-06-04 05:31:37] 2025-06-04 09:31:37,819 [wrapper] Test setup, not cleaning
[2025-06-04 05:31:37] 2025-06-04 09:31:37,820 [wrapper] apfmon messages muted
[2025-06-04 05:31:37] 2025-06-04 09:31:37,822 [wrapper] ==== wrapper stdout END ====
[2025-06-04 05:31:37] 2025-06-04 09:31:37,823 [wrapper] ==== wrapper stderr END ====
[2025-06-04 05:31:37]  *** Error codes and diagnostics ***
[2025-06-04 05:31:37]     "exeErrorCode": 0,
[2025-06-04 05:31:37]     "exeErrorDiag": "",
[2025-06-04 05:31:37]     "pilotErrorCode": 0,
[2025-06-04 05:31:37]     "pilotErrorDiag": "",
[2025-06-04 05:31:37]  *** Listing of results directory ***
[2025-06-04 05:31:37] total 388064
[2025-06-04 05:31:37] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 23:29 pilot3.tar.gz
[2025-06-04 05:31:37] -rwx------. 1 boincer umatlas     37140 Jun  3 23:39 runpilot2-wrapper.sh
[2025-06-04 05:31:37] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 23:39 queuedata.json
[2025-06-04 05:31:37] -rw-r--r--. 1 boincer umatlas       100 Jun  4 04:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 05:31:37] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 04:35 run_atlas
[2025-06-04 05:31:37] -rw-r--r--. 1 boincer umatlas       105 Jun  4 04:35 job.xml
[2025-06-04 05:31:37] -rw-r--r--. 2 boincer umatlas 213959611 Jun  4 04:35 EVNT.45006593._002071.pool.root.1
[2025-06-04 05:31:37] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 04:35 start_atlas.sh
[2025-06-04 05:31:37] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 04:35 shared
[2025-06-04 05:31:37] -rw-r--r--. 2 boincer umatlas    508883 Jun  4 04:35 input.tar.gz
[2025-06-04 05:31:37] -rw-r--r--. 1 boincer umatlas         0 Jun  4 04:35 boinc_lockfile
[2025-06-04 05:31:37] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 04:35 pandaJob.out
[2025-06-04 05:31:37] -rw-------. 1 boincer umatlas    986774 Jun  4 04:35 agis_schedconf.cvmfs.json
[2025-06-04 05:31:37] -rw-------. 1 boincer umatlas   1603667 Jun  4 04:35 agis_ddmendpoints.agis.ALL.json
[2025-06-04 05:31:37] drwx------. 4 boincer umatlas      4096 Jun  4 04:36 pilot3
[2025-06-04 05:31:37] -rw-r--r--. 1 boincer umatlas      6855 Jun  4 05:30 init_data.xml
[2025-06-04 05:31:37] -rw-------. 1 boincer umatlas 178292356 Jun  4 05:30 HITS.45006595._051702.pool.root.1
[2025-06-04 05:31:37] -rw-r--r--. 1 boincer umatlas       529 Jun  4 05:30 boinc_task_state.xml
[2025-06-04 05:31:37] -rw-------. 1 boincer umatlas        95 Jun  4 05:30 pilot_heartbeat.json
[2025-06-04 05:31:37] -rw-------. 1 boincer umatlas      1034 Jun  4 05:31 memory_monitor_summary.json
[2025-06-04 05:31:37] -rw-------. 1 boincer umatlas    302869 Jun  4 05:31 log.45006595._051702.job.log.tgz.1
[2025-06-04 05:31:37] -rw-------. 1 boincer umatlas      7713 Jun  4 05:31 heartbeat.json
[2025-06-04 05:31:37] -rw-r--r--. 1 boincer umatlas        27 Jun  4 05:31 wrapper_checkpoint.txt
[2025-06-04 05:31:37] -rw-------. 1 boincer umatlas      4548 Jun  4 05:31 pilotlog.txt
[2025-06-04 05:31:37] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 05:31 boinc_mmap_file
[2025-06-04 05:31:37] -rw-------. 1 boincer umatlas    343605 Jun  4 05:31 log.45006595._051702.job.log.1
[2025-06-04 05:31:37] -rw-------. 1 boincer umatlas       357 Jun  4 05:31 output.list
[2025-06-04 05:31:37] -rw-r--r--. 1 boincer umatlas       620 Jun  4 05:31 runtime_log
[2025-06-04 05:31:37] -rw-------. 1 boincer umatlas    665600 Jun  4 05:31 result.tar.gz
[2025-06-04 05:31:37] -rw-r--r--. 1 boincer umatlas      8659 Jun  4 05:31 runtime_log.err
[2025-06-04 05:31:37] -rw-------. 1 boincer umatlas       650 Jun  4 05:31 fJnKDmH9tg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmIeaKDmFdOhnn.diag
[2025-06-04 05:31:37] -rw-r--r--. 1 boincer umatlas     22564 Jun  4 05:31 stderr.txt
[2025-06-04 05:31:37] HITS file was successfully produced:
[2025-06-04 05:31:37] -rw-------. 1 boincer umatlas 178292356 Jun  4 05:30 shared/HITS.pool.root.1
[2025-06-04 05:31:37]  *** Contents of shared directory: ***
[2025-06-04 05:31:37] total 384236
[2025-06-04 05:31:37] -rw-r--r--. 2 boincer umatlas 213959611 Jun  4 04:35 ATLAS.root_0
[2025-06-04 05:31:37] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 04:35 start_atlas.sh
[2025-06-04 05:31:37] -rw-r--r--. 2 boincer umatlas    508883 Jun  4 04:35 input.tar.gz
[2025-06-04 05:31:37] -rw-------. 1 boincer umatlas 178292356 Jun  4 05:30 HITS.pool.root.1
[2025-06-04 05:31:37] -rw-------. 1 boincer umatlas    665600 Jun  4 05:31 result.tar.gz
05:31:39 (3505714): run_atlas exited; CPU time 21493.331696
05:31:39 (3505714): called boinc_finish(0)

</stderr_txt>
]]>

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