Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 16:00:15 (30700): Detected: vboxwrapper 26206
2025-06-04 16:00:15 (30700): Detected: BOINC client v8.2.1
2025-06-04 16:00:16 (30700): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-06-04 16:00:16 (30700): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 16:00:17 (30700): Create VM. (boinc_66683bf6f26c10c5, slot#10)
2025-06-04 16:00:17 (30700): Setting Memory Size for VM. (4096MB)
2025-06-04 16:00:17 (30700): Setting CPU Count for VM. (1)
2025-06-04 16:00:18 (30700): Setting Chipset Options for VM.
2025-06-04 16:00:18 (30700): Setting Graphics Controller Options for VM.
2025-06-04 16:00:18 (30700): Setting Boot Options for VM.
2025-06-04 16:00:18 (30700): Setting Network Configuration for NAT.
2025-06-04 16:00:19 (30700): Enabling VM Network Access.
2025-06-04 16:00:19 (30700): Disabling USB Support for VM.
2025-06-04 16:00:19 (30700): Disabling COM Port Support for VM.
2025-06-04 16:00:19 (30700): Disabling LPT Port Support for VM.
2025-06-04 16:00:20 (30700): Disabling Audio Support for VM.
2025-06-04 16:00:20 (30700): Disabling Clipboard Support for VM.
2025-06-04 16:00:20 (30700): Disabling Drag and Drop Support for VM.
2025-06-04 16:00:20 (30700): Adding storage controller(s) to VM.
2025-06-04 16:00:21 (30700): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 16:00:21 (30700): Adding VirtualBox Guest Additions to VM.
2025-06-04 16:00:21 (30700): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 16:00:22 (30700): forwarding host port 60157 to guest port 80
2025-06-04 16:00:22 (30700): Enabling remote desktop for VM.
2025-06-04 16:00:22 (30700): Required extension pack not installed, remote desktop not enabled.
2025-06-04 16:00:22 (30700): Enabling shared directory for VM.
2025-06-04 16:00:23 (30700): Starting VM using VBoxManage interface. (boinc_66683bf6f26c10c5, slot#10)
2025-06-04 16:00:29 (30700): Successfully started VM. (PID = '10772')
2025-06-04 16:00:29 (30700): Reporting VM Process ID to BOINC.
2025-06-04 16:00:29 (30700): Guest Log: BIOS: VirtualBox 7.1.8
2025-06-04 16:00:29 (30700): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 16:00:29 (30700): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 16:00:29 (30700): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 16:00:29 (30700): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 16:00:29 (30700): Detected: Web Application Enabled (http://localhost:60157)
2025-06-04 16:00:29 (30700): Preference change detected
2025-06-04 16:00:29 (30700): Setting CPU throttle for VM. (100%)
2025-06-04 16:00:30 (30700): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 16:00:31 (30700): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 16:00:31 (30700): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 16:00:34 (30700): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 16:00:34 (30700): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 16:00:34 (30700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 16:00:41 (30700): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 16:00:41 (30700): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 16:00:59 (30700): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 16:00:59 (30700): Guest Log: 00:00:00.000235 main     Log opened 2025-06-04T16:00:57.513138000Z
2025-06-04 16:00:59 (30700): Guest Log: 00:00:00.000656 main     OS Product: Linux
2025-06-04 16:00:59 (30700): Guest Log: 00:00:00.000802 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 16:00:59 (30700): Guest Log: 00:00:00.000922 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 16:00:59 (30700): Guest Log: 00:00:00.001198 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 16:00:59 (30700): Guest Log: 00:00:00.001202 main     Process ID: 1254
2025-06-04 16:00:59 (30700): Guest Log: 00:00:00.001204 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 16:00:59 (30700): Guest Log: 00:00:00.005635 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 16:00:59 (30700): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 16:00:59 (30700): Guest Log: [INFO] Mounting shared directory
2025-06-04 16:00:59 (30700): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 16:01:04 (30700): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 16:01:04 (30700): Guest Log: [INFO] Detected branch: prod
2025-06-04 16:01:04 (30700): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 16:01:04 (30700): Guest Log: Copying input files
2025-06-04 16:01:06 (30700): Guest Log: Copied input files into RunAtlas.
2025-06-04 16:01:06 (30700): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-06-04 16:01:09 (30700): Guest Log: 00:00:10.036715 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 034 491 000ns (GuestNow=1 749 045 669 514 524 000 ns GuestLast=1 749 052 857 549 015 000 ns fSetTimeLastLoop=true )
2025-06-04 16:01:14 (30700): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 16:01:14 (30700): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 16:01:14 (30700): Guest Log: 2.6.3.0 1552 0 31560 146781 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-06-04 16:01:15 (30700): Guest Log: copied the webapp to /var/www
2025-06-04 16:01:15 (30700): Guest Log: core_number=1
2025-06-04 16:01:15 (30700): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 16:01:15 (30700): Guest Log:  *** Starting ATLAS job. (PandaID=6667730001 taskID=44871837) ***
2025-06-04 17:40:35 (30700): Status Report: Elapsed Time: '6000.000000'
2025-06-04 17:40:35 (30700): Status Report: CPU Time: '5668.437500'
2025-06-04 19:20:41 (30700): Status Report: Elapsed Time: '12000.000000'
2025-06-04 19:20:41 (30700): Status Report: CPU Time: '11636.531250'
2025-06-04 21:00:48 (30700): Status Report: Elapsed Time: '18000.000000'
2025-06-04 21:00:48 (30700): Status Report: CPU Time: '17612.796875'
2025-06-04 22:40:55 (30700): Status Report: Elapsed Time: '24000.000000'
2025-06-04 22:40:55 (30700): Status Report: CPU Time: '23589.531250'
2025-06-05 00:21:02 (30700): Status Report: Elapsed Time: '30000.000000'
2025-06-05 00:21:02 (30700): Status Report: CPU Time: '29570.265625'
2025-06-05 02:01:08 (30700): Status Report: Elapsed Time: '36000.000000'
2025-06-05 02:01:08 (30700): Status Report: CPU Time: '35549.578125'
2025-06-05 03:41:14 (30700): Status Report: Elapsed Time: '42000.000000'
2025-06-05 03:41:14 (30700): Status Report: CPU Time: '41530.031250'
2025-06-05 05:21:20 (30700): Status Report: Elapsed Time: '48000.000000'
2025-06-05 05:21:20 (30700): Status Report: CPU Time: '47513.546875'
2025-06-05 07:01:26 (30700): Status Report: Elapsed Time: '54000.000000'
2025-06-05 07:01:26 (30700): Status Report: CPU Time: '53492.531250'
2025-06-05 08:41:32 (30700): Status Report: Elapsed Time: '60000.000000'
2025-06-05 08:41:32 (30700): Status Report: CPU Time: '59472.500000'
2025-06-05 10:21:38 (30700): Status Report: Elapsed Time: '66000.000000'
2025-06-05 10:21:38 (30700): Status Report: CPU Time: '65453.046875'
2025-06-05 11:36:52 (30700): Guest Log:  *** Job finished ***
2025-06-05 11:36:52 (30700): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:43,028 | INFO     | [payload] control thread has finished
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:43,961 | INFO     | [data] copytool_out thread has finished
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:45,355 | INFO     | [data] queue_monitor thread has finished
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:46,587 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140188394727232)>', '<ExcThread(monitor, started 140188084836096)>']
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:47,581 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:47,581 | INFO     | [monitor] control thread has ended
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:51,594 | INFO     | all workflow threads have been joined
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:51,594 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:51,595 | INFO     | traces error code: 0
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:51,595 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:51,757 [wrapper] ==== pilot stdout END ====
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:51,763 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:51,768 [wrapper] pilotpid: 5772
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:51,774 [wrapper] Pilot exit status: 0
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:51,810 [wrapper] pandaids: 6667730001
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:51,841 [wrapper] cleanup supervisor_pilot  4452 5773
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:51,848 [wrapper] Test setup, not cleaning
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:51,854 [wrapper] apfmon messages muted
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:51,860 [wrapper] ==== wrapper stdout END ====
2025-06-05 11:36:52 (30700): Guest Log: 2025-06-05 09:36:51,867 [wrapper] ==== wrapper stderr END ====
2025-06-05 11:36:52 (30700): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 11:36:52 (30700): Guest Log:     "exeErrorCode": 0,
2025-06-05 11:36:52 (30700): Guest Log:     "exeErrorDiag": "",
2025-06-05 11:36:52 (30700): Guest Log:     "pilotErrorCode": 0,
2025-06-05 11:36:52 (30700): Guest Log:     "pilotErrorDiag": "",
2025-06-05 11:36:52 (30700): Guest Log:  *** Listing of results directory ***
2025-06-05 11:36:52 (30700): Guest Log: total 204424
2025-06-05 11:36:52 (30700): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 27 22:42 pilot3.tar.gz
2025-06-05 11:36:52 (30700): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 27 23:05 queuedata.json
2025-06-05 11:36:52 (30700): Guest Log: -rwx------. 1 atlas atlas     37140 May 27 23:08 runpilot2-wrapper.sh
2025-06-05 11:36:52 (30700): Guest Log: -rwxr-xr-x. 1 atlas atlas      9396 Jun  4 14:01 init_data.xml
2025-06-05 11:36:52 (30700): Guest Log: -rwxr-xr-x. 1 atlas atlas    508879 Jun  4 14:01 input.tar.gz
2025-06-05 11:36:52 (30700): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  4 14:01 start_atlas.sh
2025-06-05 11:36:52 (30700): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 14:01 EVNT.44871834._002931.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 11:36:52 (30700): Guest Log: -rw-r--r--. 1 atlas atlas      2556 Jun  4 14:01 pandaJob.out
2025-06-05 11:36:52 (30700): Guest Log: -rw-------. 1 atlas atlas    986819 Jun  4 14:01 agis_schedconf.cvmfs.json
2025-06-05 11:36:52 (30700): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 14:01 pilot3
2025-06-05 11:36:52 (30700): Guest Log: -rw-------. 1 atlas atlas 191985567 Jun  5 09:35 HITS.44871837._074813.pool.root.1
2025-06-05 11:36:52 (30700): Guest Log: -rw-------. 1 atlas atlas        95 Jun  5 09:35 pilot_heartbeat.json
2025-06-05 11:36:52 (30700): Guest Log: -rw-------. 1 atlas atlas      1021 Jun  5 09:36 memory_monitor_summary.json
2025-06-05 11:36:52 (30700): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  5 09:36 agis_ddmendpoints.agis.ALL.json
2025-06-05 11:36:52 (30700): Guest Log: -rw-------. 1 atlas atlas    756361 Jun  5 09:36 log.44871837._074813.job.log.tgz.1
2025-06-05 11:36:52 (30700): Guest Log: -rw-------. 1 atlas atlas      7675 Jun  5 09:36 heartbeat.json
2025-06-05 11:36:52 (30700): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  5 09:36 pilotlog.txt
2025-06-05 11:36:52 (30700): Guest Log: -rw-------. 1 atlas atlas   6033185 Jun  5 09:36 log.44871837._074813.job.log.1
2025-06-05 11:36:52 (30700): Guest Log: -rw-------. 1 atlas atlas       357 Jun  5 09:36 output.list
2025-06-05 11:36:52 (30700): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  5 09:36 runtime_log
2025-06-05 11:36:52 (30700): Guest Log: -rw-------. 1 atlas atlas   6809600 Jun  5 09:36 result.tar.gz
2025-06-05 11:36:52 (30700): Guest Log: -rw-------. 1 atlas atlas       656 Jun  5 09:36 U6mLDmRaIe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUbaKDmrAnRdm.diag
2025-06-05 11:36:52 (30700): Guest Log: -rw-r--r--. 1 atlas atlas      8459 Jun  5 09:36 runtime_log.err
2025-06-05 11:36:52 (30700): Guest Log: Looking for outputfile HITS.44871837._074813.pool.root.1
2025-06-05 11:36:52 (30700): Guest Log: HITS file was successfully produced
2025-06-05 11:36:52 (30700): Guest Log: -rw-------. 1 atlas atlas 191985567 Jun  5 09:35 /home/atlas/RunAtlas/HITS.44871837._074813.pool.root.1
2025-06-05 11:36:54 (30700): Guest Log: Successfully finished the ATLAS job!
2025-06-05 11:36:54 (30700): Guest Log: Copying the results back to the shared directory!
2025-06-05 11:36:54 (30700): Guest Log:  *** Contents of shared directory: ***
2025-06-05 11:36:54 (30700): Guest Log: total 414216
2025-06-05 11:36:54 (30700): Guest Log: -rwxrwxrwx. 1 root root 224816172 Jun  4 14:00 ATLAS.root_0
2025-06-05 11:36:54 (30700): Guest Log: -rwxrwxrwx. 1 root root 191985567 Jun  5 09:36 HITS.pool.root.1
2025-06-05 11:36:54 (30700): Guest Log: -rwxrwxrwx. 1 root root      9396 Jun  4 14:00 init_data.xml
2025-06-05 11:36:54 (30700): Guest Log: -rwxrwxrwx. 1 root root    508879 Jun  4 08:33 input.tar.gz
2025-06-05 11:36:54 (30700): Guest Log: -rwxrwxrwx. 1 root root   6809600 Jun  5 09:36 result.tar.gz
2025-06-05 11:36:54 (30700): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 08:33 start_atlas.sh
2025-06-05 11:36:55 (30700): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 11:36:55 (30700): VM Completion File Detected.
2025-06-05 11:36:55 (30700): Powering off VM.
2025-06-05 11:36:56 (30700): Successfully stopped VM.
2025-06-05 11:36:56 (30700): Deregistering VM. (boinc_66683bf6f26c10c5, slot#10)
2025-06-05 11:36:56 (30700): Removing network bandwidth throttle group from VM.
2025-06-05 11:36:56 (30700): Removing VM from VirtualBox.
11:37:02 (30700): called boinc_finish(0)

</stderr_txt>
]]>

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