Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:28:38 (7429): wrapper (7.7.26015): starting
18:28:38 (7429): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 18:28:38] Arguments: --nthreads 8
[2025-06-04 18:28:38] Threads: 8
[2025-06-04 18:28:38] Checking for CVMFS
[2025-06-04 18:28:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 18:28:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 18:28:39] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 18:28:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 18:28:40] 2.11.2.0 25320 33436 97036 146788 0 16 21816095 25165824 3132 130560 0 17526816 99.806 19292238 2265 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 18:28:40] CVMFS is ok
[2025-06-04 18:28:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 18:28:40] Checking for apptainer binary...
[2025-06-04 18:28:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 18:28:40] Running /usr/bin/apptainer --version
[2025-06-04 18:28:40] apptainer version 1.3.2-1.el7
[2025-06-04 18:28:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 18:28:44] cg-vwn449.simple-grid.lan
[2025-06-04 18:28:44] apptainer works
[2025-06-04 18:28:44] Set ATHENA_PROC_NUMBER=8
[2025-06-04 18:28:44] Set ATHENA_CORE_NUMBER=8
[2025-06-04 18:28:45] Starting ATLAS job with PandaID=6678286017
[2025-06-04 18:28:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 22:34:39]  *** The last 200 lines of the pilot log: ***
[2025-06-04 22:34:39] 2025-06-04 20:26:44,871 | INFO     | extracted standard info from prmon json
[2025-06-04 22:34:39] 2025-06-04 20:26:44,871 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 22:34:39] 2025-06-04 20:26:44,872 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 22:34:39] 2025-06-04 20:26:44,872 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 22:34:39] 2025-06-04 20:26:44,872 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 22:34:39] 2025-06-04 20:26:44,877 | INFO     | fitting pss+swap vs Time
[2025-06-04 22:34:39] 2025-06-04 20:26:44,877 | INFO     | sum of square deviations: 3346927870.0
[2025-06-04 22:34:39] 2025-06-04 20:26:44,879 | INFO     | sum of deviations: 78035752857.00003
[2025-06-04 22:34:39] 2025-06-04 20:26:44,879 | INFO     | mean x: 1749061964.0
[2025-06-04 22:34:39] 2025-06-04 20:26:44,879 | INFO     | mean y: 2445437.2398190047
[2025-06-04 22:34:39] 2025-06-04 20:26:44,880 | INFO     | -- intersect: -40778047138.563156
[2025-06-04 22:34:39] 2025-06-04 20:26:44,880 | INFO     | intersect: -40778047138.563156
[2025-06-04 22:34:39] 2025-06-04 20:26:44,880 | INFO     | chi2: 5.707455874254758
[2025-06-04 22:34:39] 2025-06-04 20:26:44,881 | INFO     | sum of square deviations: 3124858590.0
[2025-06-04 22:34:39] 2025-06-04 20:26:44,883 | INFO     | sum of deviations: 76256011580.5
[2025-06-04 22:34:39] 2025-06-04 20:26:44,883 | INFO     | mean x: 1749061811.5
[2025-06-04 22:34:39] 2025-06-04 20:26:44,883 | INFO     | mean y: 2444214.8842592593
[2025-06-04 22:34:39] 2025-06-04 20:26:44,884 | INFO     | -- intersect: -42679960096.01107
[2025-06-04 22:34:39] 2025-06-04 20:26:44,884 | INFO     | intersect: -42679960096.01107
[2025-06-04 22:34:39] 2025-06-04 20:26:44,884 | INFO     | chi2: 5.718097864208812
[2025-06-04 22:34:39] 2025-06-04 20:26:44,884 | INFO     | current chi2=5.718097864208812 (change=-0.18645768252118058 %)
[2025-06-04 22:34:39] 2025-06-04 20:26:44,884 | INFO     | right removable region: 215
[2025-06-04 22:34:39] 2025-06-04 20:26:44,885 | INFO     | sum of square deviations: 3124858590.0
[2025-06-04 22:34:39] 2025-06-04 20:26:44,887 | INFO     | sum of deviations: 2876038888.499999
[2025-06-04 22:34:39] 2025-06-04 20:26:44,887 | INFO     | mean x: 1749062116.5
[2025-06-04 22:34:39] 2025-06-04 20:26:44,887 | INFO     | mean y: 2496993.402777778
[2025-06-04 22:34:39] 2025-06-04 20:26:44,887 | INFO     | -- intersect: -1607294464.538401
[2025-06-04 22:34:39] 2025-06-04 20:26:44,887 | INFO     | intersect: -1607294464.538401
[2025-06-04 22:34:39] 2025-06-04 20:26:44,887 | INFO     | chi2: 1.0188899625220795
[2025-06-04 22:34:39] 2025-06-04 20:26:44,888 | INFO     | current chi2=1.0188899625220795 (change=82.14808865858959 %)
[2025-06-04 22:34:39] 2025-06-04 20:26:44,888 | INFO     | sum of square deviations: 2912836010.0
[2025-06-04 22:34:39] 2025-06-04 20:26:44,890 | INFO     | sum of deviations: -25112173780.0
[2025-06-04 22:34:39] 2025-06-04 20:26:44,890 | INFO     | mean x: 1749062269.0
[2025-06-04 22:34:39] 2025-06-04 20:26:44,890 | INFO     | mean y: 2516970.0
[2025-06-04 22:34:39] 2025-06-04 20:26:44,890 | INFO     | -- intersect: 15081551800.78991
[2025-06-04 22:34:39] 2025-06-04 20:26:44,890 | INFO     | intersect: 15081551800.78991
[2025-06-04 22:34:39] 2025-06-04 20:26:44,891 | INFO     | chi2: 0.15272278451445614
[2025-06-04 22:34:39] 2025-06-04 20:26:44,891 | INFO     | current chi2=0.15272278451445614 (change=85.01086573309465 %)
[2025-06-04 22:34:39] 2025-06-04 20:26:44,891 | INFO     | sum of square deviations: 2710627567.5
[2025-06-04 22:34:39] 2025-06-04 20:26:44,893 | INFO     | sum of deviations: -23088324777.499996
[2025-06-04 22:34:39] 2025-06-04 20:26:44,893 | INFO     | mean x: 1749062421.5
[2025-06-04 22:34:39] 2025-06-04 20:26:44,893 | INFO     | mean y: 2515402.723300971
[2025-06-04 22:34:39] 2025-06-04 20:26:44,893 | INFO     | -- intersect: 14900512356.60125
[2025-06-04 22:34:39] 2025-06-04 20:26:44,893 | INFO     | intersect: 14900512356.60125
[2025-06-04 22:34:39] 2025-06-04 20:26:44,894 | INFO     | chi2: 0.13845289619059298
[2025-06-04 22:34:39] 2025-06-04 20:26:44,894 | INFO     | current chi2=0.13845289619059298 (change=9.343653842634355 %)
[2025-06-04 22:34:39] 2025-06-04 20:26:44,894 | INFO     | left removable region: 30
[2025-06-04 22:34:39] 2025-06-04 20:26:44,894 | INFO     | sum of square deviations: 1963274020.0
[2025-06-04 22:34:39] 2025-06-04 20:26:44,896 | INFO     | sum of deviations: -1258707610.9999993
[2025-06-04 22:34:39] 2025-06-04 20:26:44,896 | INFO     | mean x: 1749062696.0
[2025-06-04 22:34:39] 2025-06-04 20:26:44,896 | INFO     | mean y: 2497118.5621621623
[2025-06-04 22:34:39] 2025-06-04 20:26:44,896 | INFO     | -- intersect: 1123868106.587246
[2025-06-04 22:34:39] 2025-06-04 20:26:44,896 | INFO     | intersect: 1123868106.587246
[2025-06-04 22:34:39] 2025-06-04 20:26:44,897 | INFO     | chi2: 0.03594061329590894
[2025-06-04 22:34:39] 2025-06-04 20:26:44,897 | INFO     | -- intersect: 1123868106.587246
[2025-06-04 22:34:39] 2025-06-04 20:26:44,897 | INFO     | current memory leak: -0.64 B/s (using 185 data points, chi2=0.04)
[2025-06-04 22:34:39] 2025-06-04 20:26:44,898 | INFO     | ..............................
[2025-06-04 22:34:39] 2025-06-04 20:26:44,898 | INFO     | . Timing measurements:
[2025-06-04 22:34:39] 2025-06-04 20:26:44,898 | INFO     | . get job = 0 s
[2025-06-04 22:34:39] 2025-06-04 20:26:44,898 | INFO     | . initial setup = 8 s
[2025-06-04 22:34:39] 2025-06-04 20:26:44,898 | INFO     | . payload setup = 167 s
[2025-06-04 22:34:39] 2025-06-04 20:26:44,898 | INFO     | . stage-in = 0 s
[2025-06-04 22:34:39] 2025-06-04 20:26:44,898 | INFO     | . payload execution = 13609 s
[2025-06-04 22:34:39] 2025-06-04 20:26:44,898 | INFO     | . stage-out = 1 s
[2025-06-04 22:34:39] 2025-06-04 20:26:44,898 | INFO     | . log creation = 0 s
[2025-06-04 22:34:39] 2025-06-04 20:26:44,899 | INFO     | ..............................
[2025-06-04 22:34:39] 2025-06-04 20:26:45,091 | INFO     | 
[2025-06-04 22:34:39] 2025-06-04 20:26:45,091 | INFO     | job summary report
[2025-06-04 22:34:39] 2025-06-04 20:26:45,091 | INFO     | --------------------------------------------------
[2025-06-04 22:34:39] 2025-06-04 20:26:45,091 | INFO     | PanDA job id: 6678286017
[2025-06-04 22:34:39] 2025-06-04 20:26:45,091 | INFO     | task id: 45006595
[2025-06-04 22:34:39] 2025-06-04 20:26:45,091 | INFO     | errors: (none)
[2025-06-04 22:34:39] 2025-06-04 20:26:45,091 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 22:34:39] 2025-06-04 20:26:45,092 | INFO     | pilot state: finished 
[2025-06-04 22:34:39] 2025-06-04 20:26:45,092 | INFO     | transexitcode: 0
[2025-06-04 22:34:39] 2025-06-04 20:26:45,092 | INFO     | exeerrorcode: 0
[2025-06-04 22:34:39] 2025-06-04 20:26:45,092 | INFO     | exeerrordiag: 
[2025-06-04 22:34:39] 2025-06-04 20:26:45,092 | INFO     | exitcode: 0
[2025-06-04 22:34:39] 2025-06-04 20:26:45,092 | INFO     | exitmsg: OK
[2025-06-04 22:34:39] 2025-06-04 20:26:45,092 | INFO     | cpuconsumptiontime: 50412 s
[2025-06-04 22:34:39] 2025-06-04 20:26:45,092 | INFO     | nevents: 400
[2025-06-04 22:34:39] 2025-06-04 20:26:45,092 | INFO     | neventsw: 0
[2025-06-04 22:34:39] 2025-06-04 20:26:45,092 | INFO     | pid: 20224
[2025-06-04 22:34:39] 2025-06-04 20:26:45,092 | INFO     | pgrp: 20224
[2025-06-04 22:34:39] 2025-06-04 20:26:45,093 | INFO     | corecount: 8
[2025-06-04 22:34:39] 2025-06-04 20:26:45,093 | INFO     | event service: False
[2025-06-04 22:34:39] 2025-06-04 20:26:45,093 | INFO     | sizes: {0: 2396514, 1: 2397199, 2: 2397398, 13: 2397398, 24: 2397454, 34: 2397482, 45: 2397638, 56: 2397666, 67: 2397694, 77: 2397722, 88: 2397778, 96: 2398292, 99
[2025-06-04 22:34:39] 2025-06-04 20:26:45,093 | INFO     | --------------------------------------------------
[2025-06-04 22:34:39] 2025-06-04 20:26:45,093 | INFO     | 
[2025-06-04 22:34:39] 2025-06-04 20:26:45,093 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-06-04 22:34:39] 2025-06-04 20:26:45,641 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,641 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,641 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,641 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,641 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,642 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,642 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,642 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,642 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,642 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,642 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,642 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,642 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,642 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,642 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,643 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,643 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,643 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 22:34:39] 2025-06-04 20:26:45,643 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,643 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 22:34:39] 2025-06-04 20:26:45,643 | INFO     | job 6678286017 has completed (purged errors)
[2025-06-04 22:34:39] 2025-06-04 20:26:45,643 | INFO     | overall cleanup function is called
[2025-06-04 22:34:39] 2025-06-04 20:26:46,653 | INFO     | --- collectZombieJob: --- 10, [20224]
[2025-06-04 22:34:39] 2025-06-04 20:26:46,653 | INFO     | zombie collector waiting for pid 20224
[2025-06-04 22:34:39] 2025-06-04 20:26:46,653 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 22:34:39] 2025-06-04 20:26:46,653 | INFO     | collected zombie processes
[2025-06-04 22:34:39] 2025-06-04 20:26:46,653 | INFO     | will attempt to kill all subprocesses of pid=20224
[2025-06-04 22:34:39] 2025-06-04 20:26:46,768 | INFO     | process IDs to be killed: [20224] (in reverse order)
[2025-06-04 22:34:39] 2025-06-04 20:26:47,560 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 22:34:39] 2025-06-04 20:26:47,561 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 22:34:39] 2025-06-04 20:26:47,564 | INFO     | did not find any defunct processes belonging to 20224
[2025-06-04 22:34:39] 2025-06-04 20:26:47,567 | INFO     | did not find any defunct processes belonging to 20224
[2025-06-04 22:34:39] 2025-06-04 20:26:47,567 | INFO     | ready for new job
[2025-06-04 22:34:39] 2025-06-04 20:26:47,567 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 22:34:39] 2025-06-04 20:26:47,569 | INFO     | **************************************
[2025-06-04 22:34:39] 2025-06-04 20:26:47,570 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 22:34:39] 2025-06-04 20:26:47,570 | INFO     | **************************************
[2025-06-04 22:34:39] 2025-06-04 20:26:47,570 | INFO     | 
[2025-06-04 22:34:39] 2025-06-04 20:26:47,570 | INFO     | pilot is running in a VM
[2025-06-04 22:34:39] 2025-06-04 20:26:47,571 | INFO     | architecture information:
[2025-06-04 22:34:39] 2025-06-04 20:26:47,585 | INFO     | executing command: cat /etc/os-release
[2025-06-04 22:34:39] 2025-06-04 20:26:47,750 | INFO     | cat /etc/os-release:
[2025-06-04 22:34:39] NAME="CentOS Linux"
[2025-06-04 22:34:39] VERSION="7 (Core)"
[2025-06-04 22:34:39] ID="centos"
[2025-06-04 22:34:39] ID_LIKE="rhel fedora"
[2025-06-04 22:34:39] VERSION_ID="7"
[2025-06-04 22:34:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 22:34:39] ANSI_COLOR="0;31"
[2025-06-04 22:34:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 22:34:39] HOME_URL="https://www.centos.org/"
[2025-06-04 22:34:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 22:34:39] 
[2025-06-04 22:34:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 22:34:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 22:34:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 22:34:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 22:34:39] 
[2025-06-04 22:34:39] 2025-06-04 20:26:47,750 | INFO     | **************************************
[2025-06-04 22:34:39] 2025-06-04 20:26:48,254 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-06-04 22:34:39] 2025-06-04 20:26:48,359 | INFO     | sufficient remaining disk space (497265147904 B)
[2025-06-04 22:34:39] 2025-06-04 20:26:48,360 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 22:34:39] 2025-06-04 20:26:48,360 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 22:34:39] 2025-06-04 20:26:48,360 | INFO     | update_server=False
[2025-06-04 22:34:39] 2025-06-04 20:26:48,360 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 22:34:39] 2025-06-04 20:26:48,361 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:34:39] 2025-06-04 20:26:48,361 | INFO     | aborting loop
[2025-06-04 22:34:39] 2025-06-04 20:26:48,362 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 22:34:39] 2025-06-04 20:26:48,362 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 22:34:39] 2025-06-04 20:26:48,362 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 22:34:39] 2025-06-04 20:26:48,362 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 22:34:39] 2025-06-04 20:26:48,364 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 22:34:39] 2025-06-04 20:26:49,019 | INFO     | all data control threads have been joined
[2025-06-04 22:34:39] 2025-06-04 20:26:49,365 | INFO     | [job] retrieve thread has finished
[2025-06-04 22:34:39] 2025-06-04 20:26:49,370 | INFO     | [job] job monitor thread has finished
[2025-06-04 22:34:39] 2025-06-04 20:26:49,449 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 22:34:39] 2025-06-04 20:26:49,456 | INFO     | [job] validate thread has finished
[2025-06-04 22:34:39] 2025-06-04 20:26:49,649 | INFO     | all payload control threads have been joined
[2025-06-04 22:34:39] 2025-06-04 20:26:49,926 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 22:34:39] 2025-06-04 20:26:49,998 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 22:34:39] 2025-06-04 20:26:50,008 | INFO     | all job control threads have been joined
[2025-06-04 22:34:39] 2025-06-04 20:26:50,025 | INFO     | [data] control thread has finished
[2025-06-04 22:34:39] 2025-06-04 20:26:50,106 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:34:39] 2025-06-04 20:26:50,257 | INFO     | [data] copytool_in thread has finished
[2025-06-04 22:34:39] 2025-06-04 20:26:50,306 | INFO     | [payload] validate_post thread has finished
[2025-06-04 22:34:39] 2025-06-04 20:26:50,371 | INFO     | [data] copytool_out thread has finished
[2025-06-04 22:34:39] 2025-06-04 20:26:50,387 | INFO     | [payload] failed_post thread has finished
[2025-06-04 22:34:39] 2025-06-04 20:26:50,504 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 22:34:39] 2025-06-04 20:26:50,598 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 22:34:39] 2025-06-04 20:26:50,655 | INFO     | [payload] control thread has finished
[2025-06-04 22:34:39] 2025-06-04 20:26:51,014 | INFO     | [job] control thread has finished
[2025-06-04 22:34:39] 2025-06-04 20:26:51,112 | INFO     | [job] queue monitor thread has finished
[2025-06-04 22:34:39] 2025-06-04 20:26:53,458 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 22:34:39] 2025-06-04 20:26:54,193 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140226244511552)>', '<ExcThread(monitor, started 140225489651456)>']
[2025-06-04 22:34:39] 2025-06-04 20:26:54,400 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 22:34:39] 2025-06-04 20:26:54,400 | INFO     | [monitor] control thread has ended
[2025-06-04 22:34:39] 2025-06-04 20:26:59,219 | INFO     | all workflow threads have been joined
[2025-06-04 22:34:39] 2025-06-04 20:26:59,219 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 22:34:39] 2025-06-04 20:26:59,219 | INFO     | traces error code: 0
[2025-06-04 22:34:39] 2025-06-04 20:26:59,220 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 22:34:39] 2025-06-04 20:26:59,555 [wrapper] ==== pilot stdout END ====
[2025-06-04 22:34:39] 2025-06-04 20:26:59,616 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 22:34:39] 2025-06-04 20:26:59,673 [wrapper] pilotpid: 13596
[2025-06-04 22:34:39] 2025-06-04 20:26:59,747 [wrapper] Pilot exit status: 0
[2025-06-04 22:34:39] 2025-06-04 20:27:00,123 [wrapper] pandaids: 6678286017
[2025-06-04 22:34:39] 2025-06-04 20:27:00,897 [wrapper] cleanup supervisor_pilot 18238 13597
[2025-06-04 22:34:39] 2025-06-04 20:27:00,915 [wrapper] Test setup, not cleaning
[2025-06-04 22:34:39] 2025-06-04 20:27:00,989 [wrapper] apfmon messages muted
[2025-06-04 22:34:39] 2025-06-04 20:27:01,046 [wrapper] ==== wrapper stdout END ====
[2025-06-04 22:34:39] 2025-06-04 20:27:01,089 [wrapper] ==== wrapper stderr END ====
[2025-06-04 22:34:39]  *** Error codes and diagnostics ***
[2025-06-04 22:34:39]     "exeErrorCode": 0,
[2025-06-04 22:34:39]     "exeErrorDiag": "",
[2025-06-04 22:34:39]     "pilotErrorCode": 0,
[2025-06-04 22:34:39]     "pilotErrorDiag": "",
[2025-06-04 22:34:39]  *** Listing of results directory ***
[2025-06-04 22:34:39] total 391964
[2025-06-04 22:34:39] -rw-r--r--. 1 boinc boinc    495897 Jun  4 04:52 pilot3.tar.gz
[2025-06-04 22:34:39] -rwx------. 1 boinc boinc     37140 Jun  4 05:06 runpilot2-wrapper.sh
[2025-06-04 22:34:39] -rw-r--r--. 1 boinc boinc      5111 Jun  4 05:06 queuedata.json
[2025-06-04 22:34:39] -rw-r--r--. 1 boinc boinc       100 Jun  4 18:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 22:34:39] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 18:28 run_atlas
[2025-06-04 22:34:39] -rw-r--r--. 1 boinc boinc       105 Jun  4 18:28 job.xml
[2025-06-04 22:34:39] -rw-r--r--. 2 boinc boinc 214632399 Jun  4 18:28 EVNT.45006593._002048.pool.root.1
[2025-06-04 22:34:39] -rw-r--r--. 1 boinc boinc      6392 Jun  4 18:28 init_data.xml
[2025-06-04 22:34:39] -rw-r--r--. 2 boinc boinc     15093 Jun  4 18:28 start_atlas.sh
[2025-06-04 22:34:39] drwxrwx--x. 2 boinc boinc        68 Jun  4 18:28 shared
[2025-06-04 22:34:39] -rw-r--r--. 2 boinc boinc    508872 Jun  4 18:28 input.tar.gz
[2025-06-04 22:34:39] -rw-r--r--. 1 boinc boinc         0 Jun  4 18:28 boinc_lockfile
[2025-06-04 22:34:39] -rw-r--r--. 1 boinc boinc      2525 Jun  4 18:28 pandaJob.out
[2025-06-04 22:34:39] -rw-------. 1 boinc boinc    990984 Jun  4 18:32 agis_schedconf.cvmfs.json
[2025-06-04 22:34:39] drwx------. 4 boinc boinc      4096 Jun  4 18:32 pilot3
[2025-06-04 22:34:39] -rw-------. 1 boinc boinc 179778228 Jun  4 22:24 HITS.45006595._051111.pool.root.1
[2025-06-04 22:34:39] -rw-r--r--. 1 boinc boinc       531 Jun  4 22:25 boinc_task_state.xml
[2025-06-04 22:34:39] -rw-------. 1 boinc boinc      1029 Jun  4 22:25 memory_monitor_summary.json
[2025-06-04 22:34:39] -rw-------. 1 boinc boinc   1598969 Jun  4 22:25 agis_ddmendpoints.agis.ALL.json
[2025-06-04 22:34:39] -rw-------. 1 boinc boinc    376555 Jun  4 22:25 log.45006595._051111.job.log.tgz.1
[2025-06-04 22:34:39] -rw-------. 1 boinc boinc      7683 Jun  4 22:26 heartbeat.json
[2025-06-04 22:34:39] -rw-------. 1 boinc boinc        95 Jun  4 22:26 pilot_heartbeat.json
[2025-06-04 22:34:39] -rw-------. 1 boinc boinc      4539 Jun  4 22:26 pilotlog.txt
[2025-06-04 22:34:39] -rw-------. 1 boinc boinc   1195008 Jun  4 22:27 log.45006595._051111.job.log.1
[2025-06-04 22:34:39] -rw-------. 1 boinc boinc       357 Jun  4 22:27 output.list
[2025-06-04 22:34:39] -rw-r--r--. 1 boinc boinc       620 Jun  4 22:27 runtime_log
[2025-06-04 22:34:39] -rw-------. 1 boinc boinc   1587200 Jun  4 22:27 result.tar.gz
[2025-06-04 22:34:39] -rw-------. 1 boinc boinc       657 Jun  4 22:27 YfCNDmLdtg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmk0mKDmNpZWEm.diag
[2025-06-04 22:34:39] -rw-r--r--. 1 boinc boinc      8659 Jun  4 22:27 runtime_log.err
[2025-06-04 22:34:39] -rw-r--r--. 1 boinc boinc      8192 Jun  4 22:34 boinc_mmap_file
[2025-06-04 22:34:39] -rw-r--r--. 1 boinc boinc        28 Jun  4 22:34 wrapper_checkpoint.txt
[2025-06-04 22:34:39] -rw-r--r--. 1 boinc boinc     20506 Jun  4 22:34 stderr.txt
[2025-06-04 22:34:39] HITS file was successfully produced:
[2025-06-04 22:34:39] -rw-------. 1 boinc boinc 179778228 Jun  4 22:24 shared/HITS.pool.root.1
[2025-06-04 22:34:39]  *** Contents of shared directory: ***
[2025-06-04 22:34:39] total 387240
[2025-06-04 22:34:39] -rw-r--r--. 2 boinc boinc 214632399 Jun  4 18:28 ATLAS.root_0
[2025-06-04 22:34:39] -rw-r--r--. 2 boinc boinc     15093 Jun  4 18:28 start_atlas.sh
[2025-06-04 22:34:39] -rw-r--r--. 2 boinc boinc    508872 Jun  4 18:28 input.tar.gz
[2025-06-04 22:34:39] -rw-------. 1 boinc boinc 179778228 Jun  4 22:24 HITS.pool.root.1
[2025-06-04 22:34:39] -rw-------. 1 boinc boinc   1587200 Jun  4 22:27 result.tar.gz
22:34:41 (7429): run_atlas exited; CPU time 50603.078156
22:34:41 (7429): called boinc_finish(0)

</stderr_txt>
]]>

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