Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:28:05 (1792210): wrapper (7.7.26015): starting
04:28:05 (1792210): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 04:28:05] Arguments: --nthreads 8
[2025-06-04 04:28:05] Threads: 8
[2025-06-04 04:28:05] Checking for CVMFS
[2025-06-04 04:28:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 04:28:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 04:28:06] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 04:28:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 04:28:06] 2.12.6.0 851069 32559 448648 146773 0 198 39742498 40960000 8735 16776704 1 152318174 99.664 136554056 24169 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 04:28:06] CVMFS is ok
[2025-06-04 04:28:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 04:28:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 04:28:06] Further information can be found at the LHC@home message board.
[2025-06-04 04:28:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 04:28:06] Checking for apptainer binary...
[2025-06-04 04:28:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 04:28:06] Running /usr/bin/apptainer --version
[2025-06-04 04:28:06] apptainer version 1.4.1-1.el9
[2025-06-04 04:28:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 04:28:06] c7-11-11.aglt2.org
[2025-06-04 04:28:06] apptainer works
[2025-06-04 04:28:06] Set ATHENA_PROC_NUMBER=8
[2025-06-04 04:28:06] Set ATHENA_CORE_NUMBER=8
[2025-06-04 04:28:06] Starting ATLAS job with PandaID=6678213805
[2025-06-04 04:28:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 05:22:20]  *** The last 200 lines of the pilot log: ***
[2025-06-04 05:22:20]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 05:22:20]  is_altstaged=None
[2025-06-04 05:22:20]  is_tar=False
[2025-06-04 05:22:20]  lfn=log.45006595._048645.job.log.tgz.1
[2025-06-04 05:22:20]  mtime=0
[2025-06-04 05:22:20]  protocol_id=None
[2025-06-04 05:22:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 05:22:20]  replicas=None
[2025-06-04 05:22:20]  scope=mc23_13p6TeV
[2025-06-04 05:22:20]  status=None
[2025-06-04 05:22:20]  status_code=0
[2025-06-04 05:22:20]  storage_token=
[2025-06-04 05:22:20]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678213805/log.45006595._048645.job.log.tgz.1
[2025-06-04 05:22:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ad/f9/log.45006595._048645.job.log.tgz.1
[2025-06-04 05:22:20]  workdir=None
[2025-06-04 05:22:20] ]
[2025-06-04 05:22:20] 2025-06-04 09:21:54,832 | INFO     | transferring file log.45006595._048645.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678213805/log.45006595._048645.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 05:22:20] 2025-06-04 09:21:54,832 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678213805/log.45006595._048645.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._048645.job
[2025-06-04 05:22:20] 2025-06-04 09:21:54,851 | INFO     | adding to output.list: log.45006595._048645.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ad/f9/log.45006595._048645.job.log.tg
[2025-06-04 05:22:20] 2025-06-04 09:21:54,851 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 05:22:20] 2025-06-04 09:21:54,851 | INFO     | summary of transferred files:
[2025-06-04 05:22:20] 2025-06-04 09:21:54,852 | INFO     |  -- lfn=log.45006595._048645.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 05:22:20] 2025-06-04 09:21:54,852 | INFO     | stage-out finished correctly
[2025-06-04 05:22:20] 2025-06-04 09:21:56,247 | INFO     | monitor loop #242: job 0:6678213805 is in state 'finished'
[2025-06-04 05:22:20] 2025-06-04 09:21:56,247 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:22:20] 2025-06-04 09:21:56,670 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 05:22:20] 2025-06-04 09:21:57,436 | INFO     | job 6678213805 has state=finished
[2025-06-04 05:22:20] 2025-06-04 09:21:57,437 | INFO     | preparing for final server update for job 6678213805 in state='finished'
[2025-06-04 05:22:20] 2025-06-04 09:21:57,437 | INFO     | this job has now completed (state=finished)
[2025-06-04 05:22:20] 2025-06-04 09:21:57,437 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 05:22:20] 2025-06-04 09:21:57,437 | INFO     | log transfer has been attempted: DONE
[2025-06-04 05:22:20] 2025-06-04 09:21:57,437 | INFO     | job 6678213805 has finished - writing final server update
[2025-06-04 05:22:20] 2025-06-04 09:21:57,437 | INFO     | total number of processed events: 400 (read)
[2025-06-04 05:22:20] 2025-06-04 09:21:57,454 | INFO     | executing command: lscpu
[2025-06-04 05:22:20] 2025-06-04 09:21:57,524 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 05:22:20] 2025-06-04 09:21:58,750 | INFO     | monitor loop #243: job 0:6678213805 is in state 'finished'
[2025-06-04 05:22:20] 2025-06-04 09:21:58,750 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:22:20] 2025-06-04 09:22:00,582 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 05:22:20] 2025-06-04 09:22:00,583 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678213805/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 05:22:20] 2025-06-04 09:22:00,583 | INFO     | extracted standard info from prmon json
[2025-06-04 05:22:20] 2025-06-04 09:22:00,583 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 05:22:20] 2025-06-04 09:22:00,583 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 05:22:20] 2025-06-04 09:22:00,583 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 05:22:20] 2025-06-04 09:22:00,583 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 05:22:20] 2025-06-04 09:22:00,584 | INFO     | fitting pss+swap vs Time
[2025-06-04 05:22:20] 2025-06-04 09:22:00,585 | INFO     | sum of square deviations: 30168007.5
[2025-06-04 05:22:20] 2025-06-04 09:22:00,585 | INFO     | sum of deviations: 4881929704.5
[2025-06-04 05:22:20] 2025-06-04 09:22:00,585 | INFO     | mean x: 1749027396.5
[2025-06-04 05:22:20] 2025-06-04 09:22:00,585 | INFO     | mean y: 2293548.8913043477
[2025-06-04 05:22:20] 2025-06-04 09:22:00,585 | INFO     | -- intersect: -283033594749.5868
[2025-06-04 05:22:20] 2025-06-04 09:22:00,585 | INFO     | intersect: -283033594749.5868
[2025-06-04 05:22:20] 2025-06-04 09:22:00,585 | INFO     | chi2: 0.732329546036325
[2025-06-04 05:22:20] 2025-06-04 09:22:00,585 | INFO     | -- intersect: -283033594749.5868
[2025-06-04 05:22:20] 2025-06-04 09:22:00,585 | INFO     | current memory leak: 161.82 B/s (using 46 data points, chi2=0.73)
[2025-06-04 05:22:20] 2025-06-04 09:22:00,585 | INFO     | ..............................
[2025-06-04 05:22:20] 2025-06-04 09:22:00,586 | INFO     | . Timing measurements:
[2025-06-04 05:22:20] 2025-06-04 09:22:00,586 | INFO     | . get job = 0 s
[2025-06-04 05:22:20] 2025-06-04 09:22:00,586 | INFO     | . initial setup = 2 s
[2025-06-04 05:22:20] 2025-06-04 09:22:00,586 | INFO     | . payload setup = 5 s
[2025-06-04 05:22:20] 2025-06-04 09:22:00,586 | INFO     | . stage-in = 0 s
[2025-06-04 05:22:20] 2025-06-04 09:22:00,586 | INFO     | . payload execution = 3196 s
[2025-06-04 05:22:20] 2025-06-04 09:22:00,586 | INFO     | . stage-out = 0 s
[2025-06-04 05:22:20] 2025-06-04 09:22:00,586 | INFO     | . log creation = 0 s
[2025-06-04 05:22:20] 2025-06-04 09:22:00,586 | INFO     | ..............................
[2025-06-04 05:22:20] 2025-06-04 09:22:01,061 | INFO     | 
[2025-06-04 05:22:20] 2025-06-04 09:22:01,061 | INFO     | job summary report
[2025-06-04 05:22:20] 2025-06-04 09:22:01,062 | INFO     | --------------------------------------------------
[2025-06-04 05:22:20] 2025-06-04 09:22:01,062 | INFO     | PanDA job id: 6678213805
[2025-06-04 05:22:20] 2025-06-04 09:22:01,062 | INFO     | task id: 45006595
[2025-06-04 05:22:20] 2025-06-04 09:22:01,062 | INFO     | errors: (none)
[2025-06-04 05:22:20] 2025-06-04 09:22:01,062 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 05:22:20] 2025-06-04 09:22:01,062 | INFO     | pilot state: finished 
[2025-06-04 05:22:20] 2025-06-04 09:22:01,062 | INFO     | transexitcode: 0
[2025-06-04 05:22:20] 2025-06-04 09:22:01,062 | INFO     | exeerrorcode: 0
[2025-06-04 05:22:20] 2025-06-04 09:22:01,062 | INFO     | exeerrordiag: 
[2025-06-04 05:22:20] 2025-06-04 09:22:01,062 | INFO     | exitcode: 0
[2025-06-04 05:22:20] 2025-06-04 09:22:01,062 | INFO     | exitmsg: OK
[2025-06-04 05:22:20] 2025-06-04 09:22:01,062 | INFO     | cpuconsumptiontime: 21061 s
[2025-06-04 05:22:20] 2025-06-04 09:22:01,062 | INFO     | nevents: 400
[2025-06-04 05:22:20] 2025-06-04 09:22:01,062 | INFO     | neventsw: 0
[2025-06-04 05:22:20] 2025-06-04 09:22:01,063 | INFO     | pid: 1804017
[2025-06-04 05:22:20] 2025-06-04 09:22:01,063 | INFO     | pgrp: 1804017
[2025-06-04 05:22:20] 2025-06-04 09:22:01,063 | INFO     | corecount: 8
[2025-06-04 05:22:20] 2025-06-04 09:22:01,063 | INFO     | event service: False
[2025-06-04 05:22:20] 2025-06-04 09:22:01,063 | INFO     | sizes: {0: 2405184, 4: 2405390, 11: 2405418, 3205: 2430888, 3206: 2439829, 3208: 2439885, 3212: 2440183}
[2025-06-04 05:22:20] 2025-06-04 09:22:01,063 | INFO     | --------------------------------------------------
[2025-06-04 05:22:20] 2025-06-04 09:22:01,063 | INFO     | 
[2025-06-04 05:22:20] 2025-06-04 09:22:01,063 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 05:22:20] 2025-06-04 09:22:01,083 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,084 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 05:22:20] 2025-06-04 09:22:01,085 | INFO     | job 6678213805 has completed (purged errors)
[2025-06-04 05:22:20] 2025-06-04 09:22:01,085 | INFO     | overall cleanup function is called
[2025-06-04 05:22:20] 2025-06-04 09:22:02,092 | INFO     | --- collectZombieJob: --- 10, [1804017]
[2025-06-04 05:22:20] 2025-06-04 09:22:02,092 | INFO     | zombie collector waiting for pid 1804017
[2025-06-04 05:22:20] 2025-06-04 09:22:02,093 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 05:22:20] 2025-06-04 09:22:02,093 | INFO     | collected zombie processes
[2025-06-04 05:22:20] 2025-06-04 09:22:02,093 | INFO     | will attempt to kill all subprocesses of pid=1804017
[2025-06-04 05:22:20] 2025-06-04 09:22:02,309 | INFO     | process IDs to be killed: [1804017] (in reverse order)
[2025-06-04 05:22:20] 2025-06-04 09:22:02,390 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 05:22:20] 2025-06-04 09:22:02,390 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 05:22:20] 2025-06-04 09:22:02,403 | INFO     | did not find any defunct processes belonging to 1804017
[2025-06-04 05:22:20] 2025-06-04 09:22:02,412 | INFO     | did not find any defunct processes belonging to 1804017
[2025-06-04 05:22:20] 2025-06-04 09:22:02,412 | INFO     | ready for new job
[2025-06-04 05:22:20] 2025-06-04 09:22:02,412 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 05:22:20] 2025-06-04 09:22:02,413 | INFO     | **************************************
[2025-06-04 05:22:20] 2025-06-04 09:22:02,413 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 05:22:20] 2025-06-04 09:22:02,413 | INFO     | **************************************
[2025-06-04 05:22:20] 2025-06-04 09:22:02,413 | INFO     | 
[2025-06-04 05:22:20] 2025-06-04 09:22:02,429 | INFO     | architecture information:
[2025-06-04 05:22:20] 2025-06-04 09:22:02,429 | INFO     | executing command: cat /etc/os-release
[2025-06-04 05:22:20] 2025-06-04 09:22:02,444 | INFO     | cat /etc/os-release:
[2025-06-04 05:22:20] NAME="CentOS Linux"
[2025-06-04 05:22:20] VERSION="7 (Core)"
[2025-06-04 05:22:20] ID="centos"
[2025-06-04 05:22:20] ID_LIKE="rhel fedora"
[2025-06-04 05:22:20] VERSION_ID="7"
[2025-06-04 05:22:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 05:22:20] ANSI_COLOR="0;31"
[2025-06-04 05:22:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 05:22:20] HOME_URL="https://www.centos.org/"
[2025-06-04 05:22:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 05:22:20] 
[2025-06-04 05:22:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 05:22:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 05:22:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 05:22:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 05:22:20] 
[2025-06-04 05:22:20] 2025-06-04 09:22:02,444 | INFO     | **************************************
[2025-06-04 05:22:20] 2025-06-04 09:22:02,947 | INFO     | PID=1795809 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 05:22:20] 2025-06-04 09:22:02,947 | INFO     | .. there are 16 such processes running
[2025-06-04 05:22:20] 2025-06-04 09:22:02,947 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 05:22:20] 2025-06-04 09:22:02,966 | INFO     | sufficient remaining disk space (85700116480 B)
[2025-06-04 05:22:20] 2025-06-04 09:22:02,966 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 05:22:20] 2025-06-04 09:22:02,966 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 05:22:20] 2025-06-04 09:22:02,966 | INFO     | update_server=False
[2025-06-04 05:22:20] 2025-06-04 09:22:02,966 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 05:22:20] 2025-06-04 09:22:02,967 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:22:20] 2025-06-04 09:22:02,967 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 05:22:20] 2025-06-04 09:22:02,967 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 05:22:20] 2025-06-04 09:22:02,967 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 05:22:20] 2025-06-04 09:22:02,968 | INFO     | aborting loop
[2025-06-04 05:22:20] 2025-06-04 09:22:02,969 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 05:22:20] 2025-06-04 09:22:02,969 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 05:22:20] 2025-06-04 09:22:02,969 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 05:22:20] 2025-06-04 09:22:03,020 | INFO     | all payload control threads have been joined
[2025-06-04 05:22:20] 2025-06-04 09:22:03,789 | INFO     | all data control threads have been joined
[2025-06-04 05:22:20] 2025-06-04 09:22:03,972 | INFO     | [job] retrieve thread has finished
[2025-06-04 05:22:20] 2025-06-04 09:22:03,974 | INFO     | [job] job monitor thread has finished
[2025-06-04 05:22:20] 2025-06-04 09:22:04,023 | INFO     | [payload] failed_post thread has finished
[2025-06-04 05:22:20] 2025-06-04 09:22:04,026 | INFO     | [payload] control thread has finished
[2025-06-04 05:22:20] 2025-06-04 09:22:04,119 | INFO     | all job control threads have been joined
[2025-06-04 05:22:20] 2025-06-04 09:22:04,166 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 05:22:20] 2025-06-04 09:22:04,477 | INFO     | [data] copytool_in thread has finished
[2025-06-04 05:22:20] 2025-06-04 09:22:04,795 | INFO     | [data] control thread has finished
[2025-06-04 05:22:20] 2025-06-04 09:22:04,821 | INFO     | [payload] validate_post thread has finished
[2025-06-04 05:22:20] 2025-06-04 09:22:04,973 | INFO     | [data] copytool_out thread has finished
[2025-06-04 05:22:20] 2025-06-04 09:22:05,124 | INFO     | [job] control thread has finished
[2025-06-04 05:22:20] 2025-06-04 09:22:05,133 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 05:22:20] 2025-06-04 09:22:05,195 | INFO     | [job] validate thread has finished
[2025-06-04 05:22:20] 2025-06-04 09:22:05,301 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 05:22:20] 2025-06-04 09:22:05,655 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:22:20] 2025-06-04 09:22:06,661 | INFO     | [job] queue monitor thread has finished
[2025-06-04 05:22:20] 2025-06-04 09:22:06,974 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 05:22:20] 2025-06-04 09:22:13,478 | INFO     | job.realtimelogging is not enabled
[2025-06-04 05:22:20] 2025-06-04 09:22:14,484 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 05:22:20] 2025-06-04 09:22:15,316 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139804813387584)>', '<ExcThread(monitor, started 139804297635584)>']
[2025-06-04 05:22:20] 2025-06-04 09:22:16,032 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 05:22:20] 2025-06-04 09:22:16,032 | INFO     | [monitor] control thread has ended
[2025-06-04 05:22:20] 2025-06-04 09:22:20,318 | INFO     | all workflow threads have been joined
[2025-06-04 05:22:20] 2025-06-04 09:22:20,319 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 05:22:20] 2025-06-04 09:22:20,319 | INFO     | traces error code: 0
[2025-06-04 05:22:20] 2025-06-04 09:22:20,319 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 05:22:20] 2025-06-04 09:22:20,415 [wrapper] ==== pilot stdout END ====
[2025-06-04 05:22:20] 2025-06-04 09:22:20,418 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 05:22:20] 2025-06-04 09:22:20,420 [wrapper] pilotpid: 1795809
[2025-06-04 05:22:20] 2025-06-04 09:22:20,422 [wrapper] Pilot exit status: 0
[2025-06-04 05:22:20] 2025-06-04 09:22:20,432 [wrapper] pandaids: 6678213805
[2025-06-04 05:22:20] 2025-06-04 09:22:20,491 [wrapper] cleanup supervisor_pilot 1955382 1795810
[2025-06-04 05:22:20] 2025-06-04 09:22:20,494 [wrapper] Test setup, not cleaning
[2025-06-04 05:22:20] 2025-06-04 09:22:20,496 [wrapper] apfmon messages muted
[2025-06-04 05:22:20] 2025-06-04 09:22:20,498 [wrapper] ==== wrapper stdout END ====
[2025-06-04 05:22:20] 2025-06-04 09:22:20,501 [wrapper] ==== wrapper stderr END ====
[2025-06-04 05:22:20]  *** Error codes and diagnostics ***
[2025-06-04 05:22:20]     "exeErrorCode": 0,
[2025-06-04 05:22:20]     "exeErrorDiag": "",
[2025-06-04 05:22:20]     "pilotErrorCode": 0,
[2025-06-04 05:22:20]     "pilotErrorDiag": "",
[2025-06-04 05:22:20]  *** Listing of results directory ***
[2025-06-04 05:22:20] total 385164
[2025-06-04 05:22:20] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 19:52 queuedata.json
[2025-06-04 05:22:20] -rwx------. 1 boincer umatlas     37140 Jun  3 19:53 runpilot2-wrapper.sh
[2025-06-04 05:22:20] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 19:53 pilot3.tar.gz
[2025-06-04 05:22:20] -rw-r--r--. 1 boincer umatlas       100 Jun  4 04:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 05:22:20] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 04:28 run_atlas
[2025-06-04 05:22:20] -rw-r--r--. 1 boincer umatlas       105 Jun  4 04:28 job.xml
[2025-06-04 05:22:20] -rw-r--r--. 2 boincer umatlas 214868394 Jun  4 04:28 EVNT.45006593._001951.pool.root.1
[2025-06-04 05:22:20] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 04:28 start_atlas.sh
[2025-06-04 05:22:20] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 04:28 shared
[2025-06-04 05:22:20] -rw-r--r--. 2 boincer umatlas    508880 Jun  4 04:28 input.tar.gz
[2025-06-04 05:22:20] -rw-r--r--. 1 boincer umatlas         0 Jun  4 04:28 boinc_lockfile
[2025-06-04 05:22:20] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 04:28 pandaJob.out
[2025-06-04 05:22:20] -rw-------. 1 boincer umatlas    986774 Jun  4 04:28 agis_schedconf.cvmfs.json
[2025-06-04 05:22:20] -rw-------. 1 boincer umatlas   1603667 Jun  4 04:28 agis_ddmendpoints.agis.ALL.json
[2025-06-04 05:22:20] drwx------. 4 boincer umatlas      4096 Jun  4 04:28 pilot3
[2025-06-04 05:22:20] -rw-r--r--. 1 boincer umatlas      6897 Jun  4 05:19 init_data.xml
[2025-06-04 05:22:20] -rw-------. 1 boincer umatlas        95 Jun  4 05:21 pilot_heartbeat.json
[2025-06-04 05:22:20] -rw-------. 1 boincer umatlas 174433090 Jun  4 05:21 HITS.45006595._048645.pool.root.1
[2025-06-04 05:22:20] -rw-r--r--. 1 boincer umatlas       529 Jun  4 05:21 boinc_task_state.xml
[2025-06-04 05:22:20] -rw-------. 1 boincer umatlas      1021 Jun  4 05:21 memory_monitor_summary.json
[2025-06-04 05:22:20] -rw-------. 1 boincer umatlas    295649 Jun  4 05:21 log.45006595._048645.job.log.tgz.1
[2025-06-04 05:22:20] -rw-------. 1 boincer umatlas      7691 Jun  4 05:22 heartbeat.json
[2025-06-04 05:22:20] -rw-r--r--. 1 boincer umatlas        27 Jun  4 05:22 wrapper_checkpoint.txt
[2025-06-04 05:22:20] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 05:22 boinc_mmap_file
[2025-06-04 05:22:20] -rw-------. 1 boincer umatlas      4943 Jun  4 05:22 pilotlog.txt
[2025-06-04 05:22:20] -rw-------. 1 boincer umatlas    335415 Jun  4 05:22 log.45006595._048645.job.log.1
[2025-06-04 05:22:20] -rw-------. 1 boincer umatlas       357 Jun  4 05:22 output.list
[2025-06-04 05:22:20] -rw-r--r--. 1 boincer umatlas       620 Jun  4 05:22 runtime_log
[2025-06-04 05:22:20] -rw-------. 1 boincer umatlas    655360 Jun  4 05:22 result.tar.gz
[2025-06-04 05:22:20] -rw-r--r--. 1 boincer umatlas      8659 Jun  4 05:22 runtime_log.err
[2025-06-04 05:22:20] -rw-------. 1 boincer umatlas       650 Jun  4 05:22 rFLODmOcqg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqZmKDm5YQf4n.diag
[2025-06-04 05:22:20] -rw-r--r--. 1 boincer umatlas     21424 Jun  4 05:22 stderr.txt
[2025-06-04 05:22:20] HITS file was successfully produced:
[2025-06-04 05:22:20] -rw-------. 1 boincer umatlas 174433090 Jun  4 05:21 shared/HITS.pool.root.1
[2025-06-04 05:22:20]  *** Contents of shared directory: ***
[2025-06-04 05:22:20] total 381348
[2025-06-04 05:22:20] -rw-r--r--. 2 boincer umatlas 214868394 Jun  4 04:28 ATLAS.root_0
[2025-06-04 05:22:20] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 04:28 start_atlas.sh
[2025-06-04 05:22:20] -rw-r--r--. 2 boincer umatlas    508880 Jun  4 04:28 input.tar.gz
[2025-06-04 05:22:20] -rw-------. 1 boincer umatlas 174433090 Jun  4 05:21 HITS.pool.root.1
[2025-06-04 05:22:20] -rw-------. 1 boincer umatlas    655360 Jun  4 05:22 result.tar.gz
05:22:22 (1792210): run_atlas exited; CPU time 21097.755439
05:22:22 (1792210): called boinc_finish(0)

</stderr_txt>
]]>

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