Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:32:25 (697618): wrapper (7.7.26015): starting
04:32:25 (697618): wrapper: running run_atlas (--nthreads 10)
[2025-06-04 04:32:25] Arguments: --nthreads 10
[2025-06-04 04:32:25] Threads: 10
[2025-06-04 04:32:25] Checking for CVMFS
[2025-06-04 04:32:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 04:32:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 04:32:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 04:32:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 04:32:26] 2.12.6.0 1696626 23511 212272 146773 1 102 32582842 32935936 21460 16776704 0 76787225 99.618 90952389 30429 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 04:32:26] CVMFS is ok
[2025-06-04 04:32:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 04:32:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 04:32:26] Further information can be found at the LHC@home message board.
[2025-06-04 04:32:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 04:32:26] Checking for apptainer binary...
[2025-06-04 04:32:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 04:32:26] Running /usr/bin/apptainer --version
[2025-06-04 04:32:26] apptainer version 1.4.1-1.el9
[2025-06-04 04:32:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 04:32:26] c-4-38.aglt2.org
[2025-06-04 04:32:26] apptainer works
[2025-06-04 04:32:26] Set ATHENA_PROC_NUMBER=10
[2025-06-04 04:32:26] Set ATHENA_CORE_NUMBER=10
[2025-06-04 04:32:26] Starting ATLAS job with PandaID=6677675788
[2025-06-04 04:32:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 06:42:38]  *** The last 200 lines of the pilot log: ***
[2025-06-04 06:42:38] 2025-06-04 10:42:24,041 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677675788/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 06:42:38] 2025-06-04 10:42:24,042 | INFO     | extracted standard info from prmon json
[2025-06-04 06:42:38] 2025-06-04 10:42:24,042 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 06:42:38] 2025-06-04 10:42:24,042 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 06:42:38] 2025-06-04 10:42:24,043 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 06:42:38] 2025-06-04 10:42:24,043 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 06:42:38] 2025-06-04 10:42:24,046 | INFO     | fitting pss+swap vs Time
[2025-06-04 06:42:38] 2025-06-04 10:42:24,047 | INFO     | sum of square deviations: 635085792.4251956
[2025-06-04 06:42:38] 2025-06-04 10:42:24,047 | INFO     | sum of deviations: 11542596786.110224
[2025-06-04 06:42:38] 2025-06-04 10:42:24,048 | INFO     | mean x: 1749029832.2598426
[2025-06-04 06:42:38] 2025-06-04 10:42:24,048 | INFO     | mean y: 2292077.5118110236
[2025-06-04 06:42:38] 2025-06-04 10:42:24,048 | INFO     | -- intersect: -31786084172.50684
[2025-06-04 06:42:38] 2025-06-04 10:42:24,048 | INFO     | intersect: -31786084172.50684
[2025-06-04 06:42:38] 2025-06-04 10:42:24,048 | INFO     | chi2: 3.7164736438574697
[2025-06-04 06:42:38] 2025-06-04 10:42:24,049 | INFO     | sum of square deviations: 562992179.5737705
[2025-06-04 06:42:38] 2025-06-04 10:42:24,050 | INFO     | sum of deviations: 12703030078.442617
[2025-06-04 06:42:38] 2025-06-04 10:42:24,050 | INFO     | mean x: 1749029679.7704918
[2025-06-04 06:42:38] 2025-06-04 10:42:24,050 | INFO     | mean y: 2294501.62295082
[2025-06-04 06:42:38] 2025-06-04 10:42:24,050 | INFO     | -- intersect: -39461800092.078476
[2025-06-04 06:42:38] 2025-06-04 10:42:24,050 | INFO     | intersect: -39461800092.078476
[2025-06-04 06:42:38] 2025-06-04 10:42:24,051 | INFO     | chi2: 3.719763372284597
[2025-06-04 06:42:38] 2025-06-04 10:42:24,051 | INFO     | current chi2=3.719763372284597 (change=-0.08851746957937859 %)
[2025-06-04 06:42:38] 2025-06-04 10:42:24,051 | INFO     | right removable region: 121
[2025-06-04 06:42:38] 2025-06-04 10:42:24,051 | INFO     | sum of square deviations: 562972049.5737705
[2025-06-04 06:42:38] 2025-06-04 10:42:24,052 | INFO     | sum of deviations: -15207722314.819666
[2025-06-04 06:42:38] 2025-06-04 10:42:24,052 | INFO     | mean x: 1749029984.7704918
[2025-06-04 06:42:38] 2025-06-04 10:42:24,052 | INFO     | mean y: 2348305.3278688523
[2025-06-04 06:42:38] 2025-06-04 10:42:24,053 | INFO     | -- intersect: 47249387210.40493
[2025-06-04 06:42:38] 2025-06-04 10:42:24,053 | INFO     | intersect: 47249387210.40493
[2025-06-04 06:42:38] 2025-06-04 10:42:24,053 | INFO     | chi2: 1.260162597969876
[2025-06-04 06:42:38] 2025-06-04 10:42:24,053 | INFO     | current chi2=1.260162597969876 (change=66.09251891096676 %)
[2025-06-04 06:42:38] 2025-06-04 10:42:24,054 | INFO     | sum of square deviations: 496532831.6923076
[2025-06-04 06:42:38] 2025-06-04 10:42:24,054 | INFO     | sum of deviations: -31180016511.846134
[2025-06-04 06:42:38] 2025-06-04 10:42:24,055 | INFO     | mean x: 1749030137.2820513
[2025-06-04 06:42:38] 2025-06-04 10:42:24,055 | INFO     | mean y: 2384823.0256410255
[2025-06-04 06:42:38] 2025-06-04 10:42:24,055 | INFO     | -- intersect: 109833568340.74535
[2025-06-04 06:42:38] 2025-06-04 10:42:24,055 | INFO     | intersect: 109833568340.74535
[2025-06-04 06:42:38] 2025-06-04 10:42:24,055 | INFO     | chi2: 0.30753793630497445
[2025-06-04 06:42:38] 2025-06-04 10:42:24,056 | INFO     | current chi2=0.30753793630497445 (change=75.59537659660599 %)
[2025-06-04 06:42:38] 2025-06-04 10:42:24,056 | INFO     | sum of square deviations: 435549359.41964203
[2025-06-04 06:42:38] 2025-06-04 10:42:24,057 | INFO     | sum of deviations: -30433115317.482136
[2025-06-04 06:42:38] 2025-06-04 10:42:24,057 | INFO     | mean x: 1749030289.7767856
[2025-06-04 06:42:38] 2025-06-04 10:42:24,057 | INFO     | mean y: 2382744.660714286
[2025-06-04 06:42:38] 2025-06-04 10:42:24,057 | INFO     | -- intersect: 122212275495.90158
[2025-06-04 06:42:38] 2025-06-04 10:42:24,057 | INFO     | intersect: 122212275495.90158
[2025-06-04 06:42:38] 2025-06-04 10:42:24,058 | INFO     | chi2: 0.25005691938734786
[2025-06-04 06:42:38] 2025-06-04 10:42:24,058 | INFO     | current chi2=0.25005691938734786 (change=18.69070775731053 %)
[2025-06-04 06:42:38] 2025-06-04 10:42:24,058 | INFO     | left removable region: 30
[2025-06-04 06:42:38] 2025-06-04 10:42:24,058 | INFO     | sum of square deviations: 233608671.6703292
[2025-06-04 06:42:38] 2025-06-04 10:42:24,059 | INFO     | sum of deviations: -14555825697.461538
[2025-06-04 06:42:38] 2025-06-04 10:42:24,059 | INFO     | mean x: 1749030564.2637362
[2025-06-04 06:42:38] 2025-06-04 10:42:24,059 | INFO     | mean y: 2346932.769230769
[2025-06-04 06:42:38] 2025-06-04 10:42:24,059 | INFO     | -- intersect: 108981965929.46101
[2025-06-04 06:42:38] 2025-06-04 10:42:24,059 | INFO     | intersect: 108981965929.46101
[2025-06-04 06:42:38] 2025-06-04 10:42:24,060 | INFO     | chi2: 0.21645466352326084
[2025-06-04 06:42:38] 2025-06-04 10:42:24,060 | INFO     | -- intersect: 108981965929.46101
[2025-06-04 06:42:38] 2025-06-04 10:42:24,060 | INFO     | current memory leak: -62.31 B/s (using 91 data points, chi2=0.22)
[2025-06-04 06:42:38] 2025-06-04 10:42:24,061 | INFO     | ..............................
[2025-06-04 06:42:38] 2025-06-04 10:42:24,061 | INFO     | . Timing measurements:
[2025-06-04 06:42:38] 2025-06-04 10:42:24,061 | INFO     | . get job = 0 s
[2025-06-04 06:42:38] 2025-06-04 10:42:24,061 | INFO     | . initial setup = 2 s
[2025-06-04 06:42:38] 2025-06-04 10:42:24,062 | INFO     | . payload setup = 8 s
[2025-06-04 06:42:38] 2025-06-04 10:42:24,062 | INFO     | . stage-in = 0 s
[2025-06-04 06:42:38] 2025-06-04 10:42:24,062 | INFO     | . payload execution = 7747 s
[2025-06-04 06:42:38] 2025-06-04 10:42:24,062 | INFO     | . stage-out = 0 s
[2025-06-04 06:42:38] 2025-06-04 10:42:24,062 | INFO     | . log creation = 0 s
[2025-06-04 06:42:38] 2025-06-04 10:42:24,062 | INFO     | ..............................
[2025-06-04 06:42:38] 2025-06-04 10:42:24,175 | INFO     | 
[2025-06-04 06:42:38] 2025-06-04 10:42:24,177 | INFO     | job summary report
[2025-06-04 06:42:38] 2025-06-04 10:42:24,177 | INFO     | --------------------------------------------------
[2025-06-04 06:42:38] 2025-06-04 10:42:24,177 | INFO     | PanDA job id: 6677675788
[2025-06-04 06:42:38] 2025-06-04 10:42:24,177 | INFO     | task id: 45006595
[2025-06-04 06:42:38] 2025-06-04 10:42:24,177 | INFO     | errors: (none)
[2025-06-04 06:42:38] 2025-06-04 10:42:24,177 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 06:42:38] 2025-06-04 10:42:24,177 | INFO     | pilot state: finished 
[2025-06-04 06:42:38] 2025-06-04 10:42:24,177 | INFO     | transexitcode: 0
[2025-06-04 06:42:38] 2025-06-04 10:42:24,177 | INFO     | exeerrorcode: 0
[2025-06-04 06:42:38] 2025-06-04 10:42:24,178 | INFO     | exeerrordiag: 
[2025-06-04 06:42:38] 2025-06-04 10:42:24,178 | INFO     | exitcode: 0
[2025-06-04 06:42:38] 2025-06-04 10:42:24,178 | INFO     | exitmsg: OK
[2025-06-04 06:42:38] 2025-06-04 10:42:24,178 | INFO     | cpuconsumptiontime: 42541 s
[2025-06-04 06:42:38] 2025-06-04 10:42:24,178 | INFO     | nevents: 400
[2025-06-04 06:42:38] 2025-06-04 10:42:24,178 | INFO     | neventsw: 0
[2025-06-04 06:42:38] 2025-06-04 10:42:24,178 | INFO     | pid: 710081
[2025-06-04 06:42:38] 2025-06-04 10:42:24,178 | INFO     | pgrp: 710081
[2025-06-04 06:42:38] 2025-06-04 10:42:24,178 | INFO     | corecount: 10
[2025-06-04 06:42:38] 2025-06-04 10:42:24,178 | INFO     | event service: False
[2025-06-04 06:42:38] 2025-06-04 10:42:24,178 | INFO     | sizes: {0: 2405184, 6: 2405390, 11: 2405418, 7759: 2432973, 7760: 2432972, 7762: 2442153, 7769: 2442267}
[2025-06-04 06:42:38] 2025-06-04 10:42:24,179 | INFO     | --------------------------------------------------
[2025-06-04 06:42:38] 2025-06-04 10:42:24,179 | INFO     | 
[2025-06-04 06:42:38] 2025-06-04 10:42:24,179 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 06:42:38] 2025-06-04 10:42:24,207 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,207 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,207 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,208 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,208 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,208 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,208 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,208 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,208 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,208 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,209 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,209 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,209 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,209 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,209 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,209 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,210 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,210 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 06:42:38] 2025-06-04 10:42:24,210 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,210 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 06:42:38] 2025-06-04 10:42:24,210 | INFO     | job 6677675788 has completed (purged errors)
[2025-06-04 06:42:38] 2025-06-04 10:42:24,211 | INFO     | overall cleanup function is called
[2025-06-04 06:42:38] 2025-06-04 10:42:25,221 | INFO     | --- collectZombieJob: --- 10, [710081]
[2025-06-04 06:42:38] 2025-06-04 10:42:25,221 | INFO     | zombie collector waiting for pid 710081
[2025-06-04 06:42:38] 2025-06-04 10:42:25,221 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 06:42:38] 2025-06-04 10:42:25,222 | INFO     | collected zombie processes
[2025-06-04 06:42:38] 2025-06-04 10:42:25,222 | INFO     | will attempt to kill all subprocesses of pid=710081
[2025-06-04 06:42:38] 2025-06-04 10:42:25,655 | INFO     | process IDs to be killed: [710081] (in reverse order)
[2025-06-04 06:42:38] 2025-06-04 10:42:25,804 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 06:42:38] 2025-06-04 10:42:25,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 06:42:38] 2025-06-04 10:42:25,820 | INFO     | did not find any defunct processes belonging to 710081
[2025-06-04 06:42:38] 2025-06-04 10:42:25,835 | INFO     | did not find any defunct processes belonging to 710081
[2025-06-04 06:42:38] 2025-06-04 10:42:25,836 | INFO     | ready for new job
[2025-06-04 06:42:38] 2025-06-04 10:42:25,836 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 06:42:38] 2025-06-04 10:42:25,838 | INFO     | **************************************
[2025-06-04 06:42:38] 2025-06-04 10:42:25,838 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 06:42:38] 2025-06-04 10:42:25,838 | INFO     | **************************************
[2025-06-04 06:42:38] 2025-06-04 10:42:25,838 | INFO     | 
[2025-06-04 06:42:38] 2025-06-04 10:42:25,854 | INFO     | architecture information:
[2025-06-04 06:42:38] 2025-06-04 10:42:25,858 | INFO     | executing command: cat /etc/os-release
[2025-06-04 06:42:38] 2025-06-04 10:42:25,884 | INFO     | cat /etc/os-release:
[2025-06-04 06:42:38] NAME="CentOS Linux"
[2025-06-04 06:42:38] VERSION="7 (Core)"
[2025-06-04 06:42:38] ID="centos"
[2025-06-04 06:42:38] ID_LIKE="rhel fedora"
[2025-06-04 06:42:38] VERSION_ID="7"
[2025-06-04 06:42:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 06:42:38] ANSI_COLOR="0;31"
[2025-06-04 06:42:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 06:42:38] HOME_URL="https://www.centos.org/"
[2025-06-04 06:42:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 06:42:38] 
[2025-06-04 06:42:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 06:42:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 06:42:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 06:42:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 06:42:38] 
[2025-06-04 06:42:38] 2025-06-04 10:42:25,885 | INFO     | **************************************
[2025-06-04 06:42:38] 2025-06-04 10:42:26,388 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 06:42:38] 2025-06-04 10:42:26,406 | INFO     | sufficient remaining disk space (76591136768 B)
[2025-06-04 06:42:38] 2025-06-04 10:42:26,406 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 06:42:38] 2025-06-04 10:42:26,406 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 06:42:38] 2025-06-04 10:42:26,407 | INFO     | update_server=False
[2025-06-04 06:42:38] 2025-06-04 10:42:26,407 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 06:42:38] 2025-06-04 10:42:26,407 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 06:42:38] 2025-06-04 10:42:26,407 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 06:42:38] 2025-06-04 10:42:26,407 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 06:42:38] 2025-06-04 10:42:26,408 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 06:42:38] 2025-06-04 10:42:26,900 | INFO     | all payload control threads have been joined
[2025-06-04 06:42:38] 2025-06-04 10:42:27,050 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 06:42:38] 2025-06-04 10:42:27,050 | INFO     | aborting loop
[2025-06-04 06:42:38] 2025-06-04 10:42:27,076 | INFO     | all data control threads have been joined
[2025-06-04 06:42:38] 2025-06-04 10:42:27,301 | INFO     | all job control threads have been joined
[2025-06-04 06:42:38] 2025-06-04 10:42:27,413 | INFO     | [job] retrieve thread has finished
[2025-06-04 06:42:38] 2025-06-04 10:42:27,423 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 06:42:38] 2025-06-04 10:42:27,536 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 06:42:38] 2025-06-04 10:42:27,648 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 06:42:38] 2025-06-04 10:42:27,678 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 06:42:38] 2025-06-04 10:42:27,905 | INFO     | [payload] control thread has finished
[2025-06-04 06:42:38] 2025-06-04 10:42:27,922 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 06:42:38] 2025-06-04 10:42:28,056 | INFO     | [job] job monitor thread has finished
[2025-06-04 06:42:38] 2025-06-04 10:42:28,082 | INFO     | [data] control thread has finished
[2025-06-04 06:42:38] 2025-06-04 10:42:28,155 | INFO     | [data] copytool_in thread has finished
[2025-06-04 06:42:38] 2025-06-04 10:42:28,247 | INFO     | [job] validate thread has finished
[2025-06-04 06:42:38] 2025-06-04 10:42:28,299 | INFO     | [payload] failed_post thread has finished
[2025-06-04 06:42:38] 2025-06-04 10:42:28,306 | INFO     | [job] control thread has finished
[2025-06-04 06:42:38] 2025-06-04 10:42:28,544 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 06:42:38] 2025-06-04 10:42:28,849 | INFO     | [payload] validate_post thread has finished
[2025-06-04 06:42:38] 2025-06-04 10:42:29,187 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 06:42:38] 2025-06-04 10:42:29,541 | INFO     | [data] copytool_out thread has finished
[2025-06-04 06:42:38] 2025-06-04 10:42:30,192 | INFO     | [job] queue monitor thread has finished
[2025-06-04 06:42:38] 2025-06-04 10:42:31,654 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 06:42:38] 2025-06-04 10:42:32,931 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139759831578432)>', '<ExcThread(monitor, started 139758974007040)>']
[2025-06-04 06:42:38] 2025-06-04 10:42:33,445 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 06:42:38] 2025-06-04 10:42:33,445 | INFO     | [monitor] control thread has ended
[2025-06-04 06:42:38] 2025-06-04 10:42:37,956 | INFO     | all workflow threads have been joined
[2025-06-04 06:42:38] 2025-06-04 10:42:37,956 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 06:42:38] 2025-06-04 10:42:37,957 | INFO     | traces error code: 0
[2025-06-04 06:42:38] 2025-06-04 10:42:37,957 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 06:42:38] 2025-06-04 10:42:38,148 [wrapper] ==== pilot stdout END ====
[2025-06-04 06:42:38] 2025-06-04 10:42:38,151 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 06:42:38] 2025-06-04 10:42:38,154 [wrapper] pilotpid: 701187
[2025-06-04 06:42:38] 2025-06-04 10:42:38,158 [wrapper] Pilot exit status: 0
[2025-06-04 06:42:38] 2025-06-04 10:42:38,169 [wrapper] pandaids: 6677675788
[2025-06-04 06:42:38] 2025-06-04 10:42:38,227 [wrapper] cleanup supervisor_pilot 1620250 701188
[2025-06-04 06:42:38] 2025-06-04 10:42:38,230 [wrapper] Test setup, not cleaning
[2025-06-04 06:42:38] 2025-06-04 10:42:38,232 [wrapper] apfmon messages muted
[2025-06-04 06:42:38] 2025-06-04 10:42:38,234 [wrapper] ==== wrapper stdout END ====
[2025-06-04 06:42:38] 2025-06-04 10:42:38,236 [wrapper] ==== wrapper stderr END ====
[2025-06-04 06:42:38]  *** Error codes and diagnostics ***
[2025-06-04 06:42:38]     "exeErrorCode": 0,
[2025-06-04 06:42:38]     "exeErrorDiag": "",
[2025-06-04 06:42:38]     "pilotErrorCode": 0,
[2025-06-04 06:42:38]     "pilotErrorDiag": "",
[2025-06-04 06:42:38]  *** Listing of results directory ***
[2025-06-04 06:42:38] total 391836
[2025-06-04 06:42:38] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 10:52 pilot3.tar.gz
[2025-06-04 06:42:38] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 10:52 queuedata.json
[2025-06-04 06:42:38] -rwx------. 1 boincer umatlas     37140 Jun  3 10:53 runpilot2-wrapper.sh
[2025-06-04 06:42:38] -rw-r--r--. 1 boincer umatlas       100 Jun  4 04:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 06:42:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 04:32 run_atlas
[2025-06-04 06:42:38] -rw-r--r--. 1 boincer umatlas       105 Jun  4 04:32 job.xml
[2025-06-04 06:42:38] -rw-r--r--. 2 boincer umatlas 214297226 Jun  4 04:32 EVNT.45006593._001450.pool.root.1
[2025-06-04 06:42:38] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 04:32 start_atlas.sh
[2025-06-04 06:42:38] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 04:32 shared
[2025-06-04 06:42:38] -rw-r--r--. 2 boincer umatlas    508879 Jun  4 04:32 input.tar.gz
[2025-06-04 06:42:38] -rw-r--r--. 1 boincer umatlas         0 Jun  4 04:32 boinc_lockfile
[2025-06-04 06:42:38] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 04:32 pandaJob.out
[2025-06-04 06:42:38] -rw-------. 1 boincer umatlas    986774 Jun  4 04:32 agis_schedconf.cvmfs.json
[2025-06-04 06:42:38] -rw-------. 1 boincer umatlas   1603667 Jun  4 04:32 agis_ddmendpoints.agis.ALL.json
[2025-06-04 06:42:38] drwx------. 4 boincer umatlas      4096 Jun  4 04:32 pilot3
[2025-06-04 06:42:38] -rw-r--r--. 1 boincer umatlas      6674 Jun  4 06:37 init_data.xml
[2025-06-04 06:42:38] -rw-------. 1 boincer umatlas 180981102 Jun  4 06:41 HITS.45006595._036088.pool.root.1
[2025-06-04 06:42:38] -rw-r--r--. 1 boincer umatlas       529 Jun  4 06:41 boinc_task_state.xml
[2025-06-04 06:42:38] -rw-------. 1 boincer umatlas        95 Jun  4 06:41 pilot_heartbeat.json
[2025-06-04 06:42:38] -rw-------. 1 boincer umatlas      1040 Jun  4 06:42 memory_monitor_summary.json
[2025-06-04 06:42:38] -rw-------. 1 boincer umatlas    364503 Jun  4 06:42 log.45006595._036088.job.log.tgz.1
[2025-06-04 06:42:38] -rw-------. 1 boincer umatlas      7718 Jun  4 06:42 heartbeat.json
[2025-06-04 06:42:38] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 06:42 boinc_mmap_file
[2025-06-04 06:42:38] -rw-r--r--. 1 boincer umatlas        27 Jun  4 06:42 wrapper_checkpoint.txt
[2025-06-04 06:42:38] -rw-------. 1 boincer umatlas      4476 Jun  4 06:42 pilotlog.txt
[2025-06-04 06:42:38] -rw-------. 1 boincer umatlas    704043 Jun  4 06:42 log.45006595._036088.job.log.1
[2025-06-04 06:42:38] -rw-------. 1 boincer umatlas       357 Jun  4 06:42 output.list
[2025-06-04 06:42:38] -rw-r--r--. 1 boincer umatlas       620 Jun  4 06:42 runtime_log
[2025-06-04 06:42:38] -rw-------. 1 boincer umatlas   1085440 Jun  4 06:42 result.tar.gz
[2025-06-04 06:42:38] -rw-r--r--. 1 boincer umatlas      8651 Jun  4 06:42 runtime_log.err
[2025-06-04 06:42:38] -rw-------. 1 boincer umatlas       652 Jun  4 06:42 GZ8LDm5Big7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuekKDmd3ft3m.diag
[2025-06-04 06:42:38] -rw-r--r--. 1 boincer umatlas     20935 Jun  4 06:42 stderr.txt
[2025-06-04 06:42:38] HITS file was successfully produced:
[2025-06-04 06:42:38] -rw-------. 1 boincer umatlas 180981102 Jun  4 06:41 shared/HITS.pool.root.1
[2025-06-04 06:42:38]  *** Contents of shared directory: ***
[2025-06-04 06:42:38] total 387596
[2025-06-04 06:42:38] -rw-r--r--. 2 boincer umatlas 214297226 Jun  4 04:32 ATLAS.root_0
[2025-06-04 06:42:38] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 04:32 start_atlas.sh
[2025-06-04 06:42:38] -rw-r--r--. 2 boincer umatlas    508879 Jun  4 04:32 input.tar.gz
[2025-06-04 06:42:38] -rw-------. 1 boincer umatlas 180981102 Jun  4 06:41 HITS.pool.root.1
[2025-06-04 06:42:38] -rw-------. 1 boincer umatlas   1085440 Jun  4 06:42 result.tar.gz
06:42:40 (697618): run_atlas exited; CPU time 42781.661797
06:42:40 (697618): called boinc_finish(0)

</stderr_txt>
]]>

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