Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:29:02 (30109): wrapper (7.7.26015): starting
04:29:02 (30109): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 04:29:02] Arguments: --nthreads 8
[2025-06-04 04:29:02] Threads: 8
[2025-06-04 04:29:02] Checking for CVMFS
[2025-06-04 04:29:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 04:29:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 04:29:02] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 04:29:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 04:29:03] 2.11.2.0 21799 92523 456040 146773 3 606 17600909 18432001 17380 130560 0 444247319 99.181 796806134 35405 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 04:29:03] CVMFS is ok
[2025-06-04 04:29:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 04:29:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 04:29:03] Further information can be found at the LHC@home message board.
[2025-06-04 04:29:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 04:29:03] Checking for apptainer binary...
[2025-06-04 04:29:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 04:29:03] Running /usr/bin/apptainer --version
[2025-06-04 04:29:03] apptainer version 1.3.2-1.el7
[2025-06-04 04:29:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 04:29:05] c-211-14.aglt2.org
[2025-06-04 04:29:05] apptainer works
[2025-06-04 04:29:05] Set ATHENA_PROC_NUMBER=8
[2025-06-04 04:29:05] Set ATHENA_CORE_NUMBER=8
[2025-06-04 04:29:05] Starting ATLAS job with PandaID=6677660641
[2025-06-04 04:29:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:00:08 (30109): BOINC client no longer exists - exiting
07:00:08 (30109): timer handler: client dead, exiting
07:09:25 (14708): wrapper (7.7.26015): starting
07:09:25 (14708): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 07:09:25] Arguments: --nthreads 8
[2025-06-04 07:09:25] Threads: 8
[2025-06-04 07:09:25] This job has been restarted, cleaning up previous attempt
[2025-06-04 07:09:25] Checking for CVMFS
[2025-06-04 07:09:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:09:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:09:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:09:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:09:25] 2.11.2.0 21799 92683 442220 146778 3 190 16995838 18432000 15161 130560 0 445596332 99.182 798559424 35416 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 07:09:25] CVMFS is ok
[2025-06-04 07:09:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 07:09:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 07:09:25] Further information can be found at the LHC@home message board.
[2025-06-04 07:09:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:09:25] Checking for apptainer binary...
[2025-06-04 07:09:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:09:25] Running /usr/bin/apptainer --version
[2025-06-04 07:09:25] apptainer version 1.3.2-1.el7
[2025-06-04 07:09:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:09:27] c-211-14.aglt2.org
[2025-06-04 07:09:27] apptainer works
[2025-06-04 07:09:27] Set ATHENA_PROC_NUMBER=8
[2025-06-04 07:09:27] Set ATHENA_CORE_NUMBER=8
[2025-06-04 07:09:27] Starting ATLAS job with PandaID=6677660641
[2025-06-04 07:09:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:39:01]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:39:01] 2025-06-04 14:38:45,493 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 10:39:01] 2025-06-04 14:38:45,493 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677660641/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:39:01] 2025-06-04 14:38:45,494 | INFO     | extracted standard info from prmon json
[2025-06-04 10:39:01] 2025-06-04 14:38:45,494 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:39:01] 2025-06-04 14:38:45,494 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:39:01] 2025-06-04 14:38:45,495 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:39:01] 2025-06-04 14:38:45,495 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:39:01] 2025-06-04 14:38:45,514 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:39:01] 2025-06-04 14:38:45,514 | INFO     | sum of square deviations: 2671426333.2390423
[2025-06-04 10:39:01] 2025-06-04 14:38:45,515 | INFO     | sum of deviations: 34686995902.370735
[2025-06-04 10:39:01] 2025-06-04 14:38:45,516 | INFO     | mean x: 1749041635.0926828
[2025-06-04 10:39:01] 2025-06-04 14:38:45,516 | INFO     | mean y: 2464593.980487805
[2025-06-04 10:39:01] 2025-06-04 14:38:45,516 | INFO     | -- intersect: -22707875299.980186
[2025-06-04 10:39:01] 2025-06-04 14:38:45,516 | INFO     | intersect: -22707875299.980186
[2025-06-04 10:39:01] 2025-06-04 14:38:45,516 | INFO     | chi2: 1.5229277943740407
[2025-06-04 10:39:01] 2025-06-04 14:38:45,517 | INFO     | sum of square deviations: 2480693668.1950107
[2025-06-04 10:39:01] 2025-06-04 14:38:45,518 | INFO     | sum of deviations: 33800961162.595016
[2025-06-04 10:39:01] 2025-06-04 14:38:45,518 | INFO     | mean x: 1749041482.595
[2025-06-04 10:39:01] 2025-06-04 14:38:45,518 | INFO     | mean y: 2463884.995
[2025-06-04 10:39:01] 2025-06-04 14:38:45,519 | INFO     | -- intersect: -23829290911.22588
[2025-06-04 10:39:01] 2025-06-04 14:38:45,519 | INFO     | intersect: -23829290911.22588
[2025-06-04 10:39:01] 2025-06-04 14:38:45,519 | INFO     | chi2: 1.5235057120399433
[2025-06-04 10:39:01] 2025-06-04 14:38:45,519 | INFO     | current chi2=1.5235057120399433 (change=-0.03794780475066367 %)
[2025-06-04 10:39:01] 2025-06-04 14:38:45,520 | INFO     | right removable region: 199
[2025-06-04 10:39:01] 2025-06-04 14:38:45,520 | INFO     | sum of square deviations: 2480682078.1950107
[2025-06-04 10:39:01] 2025-06-04 14:38:45,521 | INFO     | sum of deviations: 1713539828.8899992
[2025-06-04 10:39:01] 2025-06-04 14:38:45,521 | INFO     | mean x: 1749041787.595
[2025-06-04 10:39:01] 2025-06-04 14:38:45,522 | INFO     | mean y: 2490702.69
[2025-06-04 10:39:01] 2025-06-04 14:38:45,522 | INFO     | -- intersect: -1205666034.43518
[2025-06-04 10:39:01] 2025-06-04 14:38:45,522 | INFO     | intersect: -1205666034.43518
[2025-06-04 10:39:01] 2025-06-04 14:38:45,522 | INFO     | chi2: 0.056677044067972096
[2025-06-04 10:39:01] 2025-06-04 14:38:45,522 | INFO     | current chi2=0.056677044067972096 (change=96.27841554423348 %)
[2025-06-04 10:39:01] 2025-06-04 14:38:45,523 | INFO     | sum of square deviations: 2299240323.148724
[2025-06-04 10:39:01] 2025-06-04 14:38:45,524 | INFO     | sum of deviations: -4661853265.89231
[2025-06-04 10:39:01] 2025-06-04 14:38:45,525 | INFO     | mean x: 1749041940.097436
[2025-06-04 10:39:01] 2025-06-04 14:38:45,525 | INFO     | mean y: 2496025.4153846153
[2025-06-04 10:39:01] 2025-06-04 14:38:45,525 | INFO     | -- intersect: 3548787728.1720414
[2025-06-04 10:39:01] 2025-06-04 14:38:45,525 | INFO     | intersect: 3548787728.1720414
[2025-06-04 10:39:01] 2025-06-04 14:38:45,525 | INFO     | chi2: 0.0044180736792372634
[2025-06-04 10:39:01] 2025-06-04 14:38:45,525 | INFO     | current chi2=0.0044180736792372634 (change=92.2048269243916 %)
[2025-06-04 10:39:01] 2025-06-04 14:38:45,526 | INFO     | sum of square deviations: 2126868505.6000016
[2025-06-04 10:39:01] 2025-06-04 14:38:45,527 | INFO     | sum of deviations: -4981070334.200001
[2025-06-04 10:39:01] 2025-06-04 14:38:45,527 | INFO     | mean x: 1749042092.6
[2025-06-04 10:39:01] 2025-06-04 14:38:45,527 | INFO     | mean y: 2496303.747368421
[2025-06-04 10:39:01] 2025-06-04 14:38:45,527 | INFO     | -- intersect: 4098707074.5487432
[2025-06-04 10:39:01] 2025-06-04 14:38:45,527 | INFO     | intersect: 4098707074.5487432
[2025-06-04 10:39:01] 2025-06-04 14:38:45,528 | INFO     | chi2: 0.0038632356674652966
[2025-06-04 10:39:01] 2025-06-04 14:38:45,528 | INFO     | current chi2=0.0038632356674652966 (change=12.558369372141257 %)
[2025-06-04 10:39:01] 2025-06-04 14:38:45,528 | INFO     | left removable region: 30
[2025-06-04 10:39:01] 2025-06-04 14:38:45,528 | INFO     | sum of square deviations: 1496726640.0828445
[2025-06-04 10:39:01] 2025-06-04 14:38:45,529 | INFO     | sum of deviations: -3480048862.83432
[2025-06-04 10:39:01] 2025-06-04 14:38:45,530 | INFO     | mean x: 1749042367.106509
[2025-06-04 10:39:01] 2025-06-04 14:38:45,530 | INFO     | mean y: 2494963.2130177515
[2025-06-04 10:39:01] 2025-06-04 14:38:45,530 | INFO     | -- intersect: 4069204766.9224977
[2025-06-04 10:39:01] 2025-06-04 14:38:45,530 | INFO     | intersect: 4069204766.9224977
[2025-06-04 10:39:01] 2025-06-04 14:38:45,530 | INFO     | chi2: 0.003678779434954439
[2025-06-04 10:39:01] 2025-06-04 14:38:45,530 | INFO     | -- intersect: 4069204766.9224977
[2025-06-04 10:39:01] 2025-06-04 14:38:45,531 | INFO     | current memory leak: -2.33 B/s (using 169 data points, chi2=0.00)
[2025-06-04 10:39:01] 2025-06-04 14:38:45,531 | INFO     | ..............................
[2025-06-04 10:39:01] 2025-06-04 14:38:45,531 | INFO     | . Timing measurements:
[2025-06-04 10:39:01] 2025-06-04 14:38:45,532 | INFO     | . get job = 0 s
[2025-06-04 10:39:01] 2025-06-04 14:38:45,532 | INFO     | . initial setup = 1 s
[2025-06-04 10:39:01] 2025-06-04 14:38:45,532 | INFO     | . payload setup = 8 s
[2025-06-04 10:39:01] 2025-06-04 14:38:45,532 | INFO     | . stage-in = 0 s
[2025-06-04 10:39:01] 2025-06-04 14:38:45,532 | INFO     | . payload execution = 12499 s
[2025-06-04 10:39:01] 2025-06-04 14:38:45,532 | INFO     | . stage-out = 2 s
[2025-06-04 10:39:01] 2025-06-04 14:38:45,532 | INFO     | . log creation = 0 s
[2025-06-04 10:39:01] 2025-06-04 14:38:45,532 | INFO     | ..............................
[2025-06-04 10:39:01] 2025-06-04 14:38:45,642 | INFO     | 
[2025-06-04 10:39:01] 2025-06-04 14:38:45,642 | INFO     | job summary report
[2025-06-04 10:39:01] 2025-06-04 14:38:45,643 | INFO     | --------------------------------------------------
[2025-06-04 10:39:01] 2025-06-04 14:38:45,643 | INFO     | PanDA job id: 6677660641
[2025-06-04 10:39:01] 2025-06-04 14:38:45,643 | INFO     | task id: 45006595
[2025-06-04 10:39:01] 2025-06-04 14:38:45,643 | INFO     | errors: (none)
[2025-06-04 10:39:01] 2025-06-04 14:38:45,643 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:39:01] 2025-06-04 14:38:45,643 | INFO     | pilot state: finished 
[2025-06-04 10:39:01] 2025-06-04 14:38:45,643 | INFO     | transexitcode: 0
[2025-06-04 10:39:01] 2025-06-04 14:38:45,643 | INFO     | exeerrorcode: 0
[2025-06-04 10:39:01] 2025-06-04 14:38:45,643 | INFO     | exeerrordiag: 
[2025-06-04 10:39:01] 2025-06-04 14:38:45,644 | INFO     | exitcode: 0
[2025-06-04 10:39:01] 2025-06-04 14:38:45,644 | INFO     | exitmsg: OK
[2025-06-04 10:39:01] 2025-06-04 14:38:45,644 | INFO     | cpuconsumptiontime: 51018 s
[2025-06-04 10:39:01] 2025-06-04 14:38:45,644 | INFO     | nevents: 400
[2025-06-04 10:39:01] 2025-06-04 14:38:45,644 | INFO     | neventsw: 0
[2025-06-04 10:39:01] 2025-06-04 14:38:45,644 | INFO     | pid: 48335
[2025-06-04 10:39:01] 2025-06-04 14:38:45,644 | INFO     | pgrp: 48335
[2025-06-04 10:39:01] 2025-06-04 14:38:45,644 | INFO     | corecount: 8
[2025-06-04 10:39:01] 2025-06-04 14:38:45,644 | INFO     | event service: False
[2025-06-04 10:39:01] 2025-06-04 14:38:45,645 | INFO     | sizes: {0: 2405013, 1: 2405212, 6: 2405418, 11: 2405446, 12512: 2435275, 12516: 2445269, 12519: 2445453, 12529: 2445623}
[2025-06-04 10:39:01] 2025-06-04 14:38:45,645 | INFO     | --------------------------------------------------
[2025-06-04 10:39:01] 2025-06-04 14:38:45,645 | INFO     | 
[2025-06-04 10:39:01] 2025-06-04 14:38:45,645 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 10:39:01] 2025-06-04 14:38:45,694 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,695 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,695 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,695 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,695 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,695 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,695 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,695 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,695 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,696 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,696 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,696 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,696 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,696 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,696 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,696 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,696 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,696 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:39:01] 2025-06-04 14:38:45,696 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,697 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:39:01] 2025-06-04 14:38:45,697 | INFO     | job 6677660641 has completed (purged errors)
[2025-06-04 10:39:01] 2025-06-04 14:38:45,697 | INFO     | overall cleanup function is called
[2025-06-04 10:39:01] 2025-06-04 14:38:46,704 | INFO     | --- collectZombieJob: --- 10, [48335]
[2025-06-04 10:39:01] 2025-06-04 14:38:46,704 | INFO     | zombie collector waiting for pid 48335
[2025-06-04 10:39:01] 2025-06-04 14:38:46,704 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:39:01] 2025-06-04 14:38:46,705 | INFO     | collected zombie processes
[2025-06-04 10:39:01] 2025-06-04 14:38:46,705 | INFO     | will attempt to kill all subprocesses of pid=48335
[2025-06-04 10:39:01] 2025-06-04 14:38:47,035 | INFO     | process IDs to be killed: [48335] (in reverse order)
[2025-06-04 10:39:01] 2025-06-04 14:38:47,156 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:39:01] 2025-06-04 14:38:47,157 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:39:01] 2025-06-04 14:38:47,169 | INFO     | did not find any defunct processes belonging to 48335
[2025-06-04 10:39:01] 2025-06-04 14:38:47,181 | INFO     | did not find any defunct processes belonging to 48335
[2025-06-04 10:39:01] 2025-06-04 14:38:47,181 | INFO     | ready for new job
[2025-06-04 10:39:01] 2025-06-04 14:38:47,181 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:39:01] 2025-06-04 14:38:47,183 | INFO     | **************************************
[2025-06-04 10:39:01] 2025-06-04 14:38:47,183 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:39:01] 2025-06-04 14:38:47,183 | INFO     | **************************************
[2025-06-04 10:39:01] 2025-06-04 14:38:47,183 | INFO     | 
[2025-06-04 10:39:01] 2025-06-04 14:38:47,186 | INFO     | architecture information:
[2025-06-04 10:39:01] 2025-06-04 14:38:47,187 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:39:01] 2025-06-04 14:38:47,288 | INFO     | cat /etc/os-release:
[2025-06-04 10:39:01] NAME="CentOS Linux"
[2025-06-04 10:39:01] VERSION="7 (Core)"
[2025-06-04 10:39:01] ID="centos"
[2025-06-04 10:39:01] ID_LIKE="rhel fedora"
[2025-06-04 10:39:01] VERSION_ID="7"
[2025-06-04 10:39:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:39:01] ANSI_COLOR="0;31"
[2025-06-04 10:39:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:39:01] HOME_URL="https://www.centos.org/"
[2025-06-04 10:39:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:39:01] 
[2025-06-04 10:39:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:39:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:39:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:39:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:39:01] 
[2025-06-04 10:39:01] 2025-06-04 14:38:47,288 | INFO     | **************************************
[2025-06-04 10:39:01] 2025-06-04 14:38:47,790 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 10:39:01] 2025-06-04 14:38:47,810 | INFO     | sufficient remaining disk space (56690212864 B)
[2025-06-04 10:39:01] 2025-06-04 14:38:47,810 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:39:01] 2025-06-04 14:38:47,811 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:39:01] 2025-06-04 14:38:47,811 | INFO     | update_server=False
[2025-06-04 10:39:01] 2025-06-04 14:38:47,811 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:39:01] 2025-06-04 14:38:47,929 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:39:01] 2025-06-04 14:38:47,932 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:39:01] 2025-06-04 14:38:47,933 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:39:01] 2025-06-04 14:38:47,933 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:39:01] 2025-06-04 14:38:48,168 | INFO     | all data control threads have been joined
[2025-06-04 10:39:01] 2025-06-04 14:38:48,300 | INFO     | all payload control threads have been joined
[2025-06-04 10:39:01] 2025-06-04 14:38:48,562 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:39:01] 2025-06-04 14:38:48,562 | INFO     | aborting loop
[2025-06-04 10:39:01] 2025-06-04 14:38:48,815 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:39:01] 2025-06-04 14:38:48,943 | INFO     | all job control threads have been joined
[2025-06-04 10:39:01] 2025-06-04 14:38:49,173 | INFO     | [data] control thread has finished
[2025-06-04 10:39:01] 2025-06-04 14:38:49,229 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:39:01] 2025-06-04 14:38:49,306 | INFO     | [payload] control thread has finished
[2025-06-04 10:39:01] 2025-06-04 14:38:49,393 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:39:01] 2025-06-04 14:38:49,417 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:39:01] 2025-06-04 14:38:49,567 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:39:01] 2025-06-04 14:38:49,687 | INFO     | [job] validate thread has finished
[2025-06-04 10:39:01] 2025-06-04 14:38:49,909 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:39:01] 2025-06-04 14:38:49,935 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:39:01] 2025-06-04 14:38:49,949 | INFO     | [job] control thread has finished
[2025-06-04 10:39:01] 2025-06-04 14:38:50,001 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:39:01] 2025-06-04 14:38:50,060 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:39:01] 2025-06-04 14:38:50,076 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:39:01] 2025-06-04 14:38:50,128 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:39:01] 2025-06-04 14:38:50,653 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:39:01] 2025-06-04 14:38:51,653 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:39:01] 2025-06-04 14:38:53,915 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:39:01] 2025-06-04 14:38:55,814 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140493270124352)>', '<ExcThread(monitor, started 140492608108288)>']
[2025-06-04 10:39:01] 2025-06-04 14:38:55,965 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:39:01] 2025-06-04 14:38:55,965 | INFO     | [monitor] control thread has ended
[2025-06-04 10:39:01] 2025-06-04 14:39:00,839 | INFO     | all workflow threads have been joined
[2025-06-04 10:39:01] 2025-06-04 14:39:00,839 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:39:01] 2025-06-04 14:39:00,840 | INFO     | traces error code: 0
[2025-06-04 10:39:01] 2025-06-04 14:39:00,840 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:39:01] 2025-06-04 14:39:00,976 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:39:01] 2025-06-04 14:39:00,979 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:39:01] 2025-06-04 14:39:00,982 [wrapper] pilotpid: 27942
[2025-06-04 10:39:01] 2025-06-04 14:39:00,985 [wrapper] Pilot exit status: 0
[2025-06-04 10:39:01] 2025-06-04 14:39:01,023 [wrapper] pandaids: 6677660641 6677660641
[2025-06-04 10:39:01] 2025-06-04 14:39:01,108 [wrapper] cleanup supervisor_pilot 22801 27944
[2025-06-04 10:39:01] 2025-06-04 14:39:01,112 [wrapper] Test setup, not cleaning
[2025-06-04 10:39:01] 2025-06-04 14:39:01,115 [wrapper] apfmon messages muted
[2025-06-04 10:39:01] 2025-06-04 14:39:01,118 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:39:01] 2025-06-04 14:39:01,123 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:39:01]  *** Error codes and diagnostics ***
[2025-06-04 10:39:01]     "exeErrorCode": 0,
[2025-06-04 10:39:01]     "exeErrorDiag": "",
[2025-06-04 10:39:01]     "pilotErrorCode": 0,
[2025-06-04 10:39:01]     "pilotErrorDiag": "",
[2025-06-04 10:39:01]  *** Listing of results directory ***
[2025-06-04 10:39:01] total 603408
[2025-06-04 10:39:01] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-04 10:39:01] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 10:09 pilot3.tar.gz
[2025-06-04 10:39:01] -rwx------ 1 boincer umatlas     37140 Jun  3 10:29 runpilot2-wrapper.sh
[2025-06-04 10:39:01] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 10:29 queuedata.json
[2025-06-04 10:39:01] -rw-r--r-- 1 boincer umatlas       100 Jun  4 04:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:39:01] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 04:29 run_atlas
[2025-06-04 10:39:01] -rw-r--r-- 1 boincer umatlas       105 Jun  4 04:29 job.xml
[2025-06-04 10:39:01] -rw-r--r-- 3 boincer umatlas 214315821 Jun  4 04:29 EVNT.45006593._001430.pool.root.1
[2025-06-04 10:39:01] -rw-r--r-- 3 boincer umatlas 214315821 Jun  4 04:29 ATLAS.root_0
[2025-06-04 10:39:01] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 04:29 start_atlas.sh
[2025-06-04 10:39:01] drwxrwx--x 2 boincer umatlas      4096 Jun  4 04:29 shared
[2025-06-04 10:39:01] -rw-r--r-- 2 boincer umatlas    508875 Jun  4 04:29 input.tar.gz
[2025-06-04 10:39:01] -rw-r--r-- 1 boincer umatlas         0 Jun  4 04:29 boinc_lockfile
[2025-06-04 10:39:01] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 07:09 pandaJob.out
[2025-06-04 10:39:01] -rw------- 1 boincer umatlas    986812 Jun  4 07:09 agis_schedconf.cvmfs.json
[2025-06-04 10:39:01] -rw-r--r-- 1 boincer umatlas      6133 Jun  4 10:30 init_data.xml
[2025-06-04 10:39:01] -rw------- 1 boincer umatlas 182440664 Jun  4 10:37 HITS.45006595._035582.pool.root.1
[2025-06-04 10:39:01] -rw-r--r-- 1 boincer umatlas       531 Jun  4 10:37 boinc_task_state.xml
[2025-06-04 10:39:01] -rw------- 1 boincer umatlas      1059 Jun  4 10:38 memory_monitor_summary.json
[2025-06-04 10:39:01] -rw------- 1 boincer umatlas        96 Jun  4 10:38 pilot_heartbeat.json
[2025-06-04 10:39:01] -rw------- 1 boincer umatlas   1598969 Jun  4 10:38 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:39:01] -rw------- 1 boincer umatlas    385758 Jun  4 10:38 log.45006595._035582.job.log.tgz.1
[2025-06-04 10:39:01] -rw------- 1 boincer umatlas      7753 Jun  4 10:38 heartbeat.json
[2025-06-04 10:39:01] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 10:38 boinc_mmap_file
[2025-06-04 10:39:01] -rw-r--r-- 1 boincer umatlas        28 Jun  4 10:39 wrapper_checkpoint.txt
[2025-06-04 10:39:01] -rw------- 1 boincer umatlas      4353 Jun  4 10:39 pilotlog.txt
[2025-06-04 10:39:01] -rw------- 1 boincer umatlas   1101788 Jun  4 10:39 log.45006595._035582.job.log.1
[2025-06-04 10:39:01] -rw------- 1 boincer umatlas       357 Jun  4 10:39 output.list
[2025-06-04 10:39:01] -rw-r--r-- 1 boincer umatlas       620 Jun  4 10:39 runtime_log
[2025-06-04 10:39:01] -rw------- 1 boincer umatlas   1505280 Jun  4 10:39 result.tar.gz
[2025-06-04 10:39:01] -rw-r--r-- 1 boincer umatlas      8745 Jun  4 10:39 runtime_log.err
[2025-06-04 10:39:01] -rw------- 1 boincer umatlas       786 Jun  4 10:39 kPmNDm6ohg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmJvYKDmVWn8Ym.diag
[2025-06-04 10:39:01] -rw-r--r-- 1 boincer umatlas     23141 Jun  4 10:39 stderr.txt
[2025-06-04 10:39:01] HITS file was successfully produced:
[2025-06-04 10:39:01] -rw------- 1 boincer umatlas 182440664 Jun  4 10:37 shared/HITS.pool.root.1
[2025-06-04 10:39:01]  *** Contents of shared directory: ***
[2025-06-04 10:39:01] total 389460
[2025-06-04 10:39:01] -rw-r--r-- 3 boincer umatlas 214315821 Jun  4 04:29 ATLAS.root_0
[2025-06-04 10:39:01] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 04:29 start_atlas.sh
[2025-06-04 10:39:01] -rw-r--r-- 2 boincer umatlas    508875 Jun  4 04:29 input.tar.gz
[2025-06-04 10:39:01] -rw------- 1 boincer umatlas 182440664 Jun  4 10:37 HITS.pool.root.1
[2025-06-04 10:39:01] -rw------- 1 boincer umatlas   1505280 Jun  4 10:39 result.tar.gz
10:39:02 (14708): run_atlas exited; CPU time 51468.169827
10:39:02 (14708): called boinc_finish(0)

</stderr_txt>
]]>

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