Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:44:09 (1889474): wrapper (7.7.26015): starting
04:44:09 (1889474): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 04:44:09] Arguments: --nthreads 8
[2025-06-04 04:44:09] Threads: 8
[2025-06-04 04:44:09] Checking for CVMFS
[2025-06-04 04:44:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 04:44:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 04:44:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 04:44:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 04:44:09] 2.12.6.0 61263 31108 104148 146773 1 451 37272492 40960000 46216 16776704 1 480532316 99.789 270539057 31747 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 04:44:09] CVMFS is ok
[2025-06-04 04:44:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 04:44:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 04:44:09] Further information can be found at the LHC@home message board.
[2025-06-04 04:44:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 04:44:09] Checking for apptainer binary...
[2025-06-04 04:44:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 04:44:09] Running /usr/bin/apptainer --version
[2025-06-04 04:44:10] apptainer version 1.4.1-1.el9
[2025-06-04 04:44:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 04:44:11] c8-7-5.aglt2.org
[2025-06-04 04:44:11] apptainer works
[2025-06-04 04:44:11] Set ATHENA_PROC_NUMBER=8
[2025-06-04 04:44:11] Set ATHENA_CORE_NUMBER=8
[2025-06-04 04:44:11] Starting ATLAS job with PandaID=6678286705
[2025-06-04 04:44:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 05:50:46]  *** The last 200 lines of the pilot log: ***
[2025-06-04 05:50:46]  filetype=log
[2025-06-04 05:50:46]  guid=f961c435-99c8-44cd-a14d-1e2ace764d28
[2025-06-04 05:50:46]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 05:50:46]  is_altstaged=None
[2025-06-04 05:50:46]  is_tar=False
[2025-06-04 05:50:46]  lfn=log.45006595._051618.job.log.tgz.1
[2025-06-04 05:50:46]  mtime=0
[2025-06-04 05:50:46]  protocol_id=None
[2025-06-04 05:50:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 05:50:46]  replicas=None
[2025-06-04 05:50:46]  scope=mc23_13p6TeV
[2025-06-04 05:50:46]  status=None
[2025-06-04 05:50:46]  status_code=0
[2025-06-04 05:50:46]  storage_token=
[2025-06-04 05:50:46]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6678286705/log.45006595._051618.job.log.tgz.1
[2025-06-04 05:50:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/60/c9/log.45006595._051618.job.log.tgz.1
[2025-06-04 05:50:46]  workdir=None
[2025-06-04 05:50:46] ]
[2025-06-04 05:50:46] 2025-06-04 09:50:22,861 | INFO     | transferring file log.45006595._051618.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6678286705/log.45006595._051618.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 05:50:46] 2025-06-04 09:50:22,861 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6678286705/log.45006595._051618.job.log.tgz.1 /tmp/boinchome/slots/2/log.45006595._051618.job
[2025-06-04 05:50:46] 2025-06-04 09:50:22,880 | INFO     | adding to output.list: log.45006595._051618.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/60/c9/log.45006595._051618.job.log.tg
[2025-06-04 05:50:46] 2025-06-04 09:50:22,881 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 05:50:46] 2025-06-04 09:50:22,881 | INFO     | summary of transferred files:
[2025-06-04 05:50:46] 2025-06-04 09:50:22,881 | INFO     |  -- lfn=log.45006595._051618.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 05:50:46] 2025-06-04 09:50:22,881 | INFO     | stage-out finished correctly
[2025-06-04 05:50:46] 2025-06-04 09:50:25,565 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 05:50:46] 2025-06-04 09:50:25,621 | INFO     | job 6678286705 has state=finished
[2025-06-04 05:50:46] 2025-06-04 09:50:25,621 | INFO     | preparing for final server update for job 6678286705 in state='finished'
[2025-06-04 05:50:46] 2025-06-04 09:50:25,621 | INFO     | this job has now completed (state=finished)
[2025-06-04 05:50:46] 2025-06-04 09:50:25,621 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 05:50:46] 2025-06-04 09:50:25,622 | INFO     | log transfer has been attempted: DONE
[2025-06-04 05:50:46] 2025-06-04 09:50:25,622 | INFO     | job 6678286705 has finished - writing final server update
[2025-06-04 05:50:46] 2025-06-04 09:50:25,622 | INFO     | total number of processed events: 400 (read)
[2025-06-04 05:50:46] 2025-06-04 09:50:25,640 | INFO     | executing command: lscpu
[2025-06-04 05:50:46] 2025-06-04 09:50:25,712 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 05:50:46] 2025-06-04 09:50:28,247 | WARNING  | process 1929570 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 05:50:46] 2025-06-04 09:50:28,248 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678286705/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 05:50:46] 2025-06-04 09:50:28,711 | INFO     | number of running child processes to parent process 1929570: 1
[2025-06-04 05:50:46] 2025-06-04 09:50:28,711 | INFO     | maximum number of monitored processes: 6
[2025-06-04 05:50:46] 2025-06-04 09:50:30,391 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 05:50:46] 2025-06-04 09:50:30,391 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678286705/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 05:50:46] 2025-06-04 09:50:30,392 | INFO     | extracted standard info from prmon json
[2025-06-04 05:50:46] 2025-06-04 09:50:30,392 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 05:50:46] 2025-06-04 09:50:30,392 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 05:50:46] 2025-06-04 09:50:30,392 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 05:50:46] 2025-06-04 09:50:30,392 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 05:50:46] 2025-06-04 09:50:30,393 | INFO     | fitting pss+swap vs Time
[2025-06-04 05:50:46] 2025-06-04 09:50:30,393 | INFO     | sum of square deviations: 60482994.5
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | sum of deviations: 7159562619.0
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | mean x: 1749028750.5
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | mean y: 2426811.4482758623
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | -- intersect: -207035616942.09103
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | intersect: -207035616942.09103
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | chi2: 0.9672082638817417
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | -- intersect: -207035616942.09103
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | current memory leak: 118.37 B/s (using 58 data points, chi2=0.97)
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | ..............................
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | . Timing measurements:
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | . get job = 0 s
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | . initial setup = 3 s
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | . payload setup = 12 s
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | . stage-in = 0 s
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | . payload execution = 3920 s
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | . stage-out = 0 s
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | . log creation = 0 s
[2025-06-04 05:50:46] 2025-06-04 09:50:30,394 | INFO     | ..............................
[2025-06-04 05:50:46] 2025-06-04 09:50:30,446 | INFO     | 
[2025-06-04 05:50:46] 2025-06-04 09:50:30,446 | INFO     | job summary report
[2025-06-04 05:50:46] 2025-06-04 09:50:30,446 | INFO     | --------------------------------------------------
[2025-06-04 05:50:46] 2025-06-04 09:50:30,446 | INFO     | PanDA job id: 6678286705
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | task id: 45006595
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | errors: (none)
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | pilot state: finished 
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | transexitcode: 0
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | exeerrorcode: 0
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | exeerrordiag: 
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | exitcode: 0
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | exitmsg: OK
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | cpuconsumptiontime: 20950 s
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | nevents: 400
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | neventsw: 0
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | pid: 1929570
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | pgrp: 1929570
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | corecount: 8
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | event service: False
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | sizes: {0: 2405184, 10: 2405390, 11: 2405418, 3936: 2431270, 3937: 2440211, 3940: 2440267, 3945: 2440565}
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | --------------------------------------------------
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | 
[2025-06-04 05:50:46] 2025-06-04 09:50:30,447 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-04 05:50:46] 2025-06-04 09:50:30,467 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,468 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,468 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,468 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 05:50:46] 2025-06-04 09:50:30,470 | INFO     | job 6678286705 has completed (purged errors)
[2025-06-04 05:50:46] 2025-06-04 09:50:30,471 | INFO     | overall cleanup function is called
[2025-06-04 05:50:46] 2025-06-04 09:50:31,477 | INFO     | --- collectZombieJob: --- 10, [1929570]
[2025-06-04 05:50:46] 2025-06-04 09:50:31,478 | INFO     | zombie collector waiting for pid 1929570
[2025-06-04 05:50:46] 2025-06-04 09:50:31,478 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 05:50:46] 2025-06-04 09:50:31,478 | INFO     | collected zombie processes
[2025-06-04 05:50:46] 2025-06-04 09:50:31,478 | INFO     | will attempt to kill all subprocesses of pid=1929570
[2025-06-04 05:50:46] 2025-06-04 09:50:32,035 | INFO     | process IDs to be killed: [1929570] (in reverse order)
[2025-06-04 05:50:46] 2025-06-04 09:50:32,220 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 05:50:46] 2025-06-04 09:50:32,220 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 05:50:46] 2025-06-04 09:50:32,246 | INFO     | did not find any defunct processes belonging to 1929570
[2025-06-04 05:50:46] 2025-06-04 09:50:32,274 | INFO     | did not find any defunct processes belonging to 1929570
[2025-06-04 05:50:46] 2025-06-04 09:50:32,274 | INFO     | ready for new job
[2025-06-04 05:50:46] 2025-06-04 09:50:32,274 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 05:50:46] 2025-06-04 09:50:32,276 | INFO     | **************************************
[2025-06-04 05:50:46] 2025-06-04 09:50:32,276 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 05:50:46] 2025-06-04 09:50:32,276 | INFO     | **************************************
[2025-06-04 05:50:46] 2025-06-04 09:50:32,276 | INFO     | 
[2025-06-04 05:50:46] 2025-06-04 09:50:32,281 | INFO     | architecture information:
[2025-06-04 05:50:46] 2025-06-04 09:50:32,282 | INFO     | executing command: cat /etc/os-release
[2025-06-04 05:50:46] 2025-06-04 09:50:32,297 | INFO     | cat /etc/os-release:
[2025-06-04 05:50:46] NAME="CentOS Linux"
[2025-06-04 05:50:46] VERSION="7 (Core)"
[2025-06-04 05:50:46] ID="centos"
[2025-06-04 05:50:46] ID_LIKE="rhel fedora"
[2025-06-04 05:50:46] VERSION_ID="7"
[2025-06-04 05:50:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 05:50:46] ANSI_COLOR="0;31"
[2025-06-04 05:50:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 05:50:46] HOME_URL="https://www.centos.org/"
[2025-06-04 05:50:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 05:50:46] 
[2025-06-04 05:50:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 05:50:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 05:50:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 05:50:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 05:50:46] 
[2025-06-04 05:50:46] 2025-06-04 09:50:32,298 | INFO     | **************************************
[2025-06-04 05:50:46] 2025-06-04 09:50:32,801 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-04 05:50:46] 2025-06-04 09:50:32,817 | INFO     | sufficient remaining disk space (171982192640 B)
[2025-06-04 05:50:46] 2025-06-04 09:50:32,817 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 05:50:46] 2025-06-04 09:50:32,817 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 05:50:46] 2025-06-04 09:50:32,817 | INFO     | update_server=False
[2025-06-04 05:50:46] 2025-06-04 09:50:32,817 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 05:50:46] 2025-06-04 09:50:32,818 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:50:46] 2025-06-04 09:50:32,818 | INFO     | aborting loop
[2025-06-04 05:50:46] 2025-06-04 09:50:33,290 | INFO     | all data control threads have been joined
[2025-06-04 05:50:46] 2025-06-04 09:50:33,438 | INFO     | all payload control threads have been joined
[2025-06-04 05:50:46] 2025-06-04 09:50:33,461 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 05:50:46] 2025-06-04 09:50:33,700 | INFO     | all job control threads have been joined
[2025-06-04 05:50:46] 2025-06-04 09:50:33,822 | INFO     | [job] retrieve thread has finished
[2025-06-04 05:50:46] 2025-06-04 09:50:33,828 | INFO     | [job] job monitor thread has finished
[2025-06-04 05:50:46] 2025-06-04 09:50:33,881 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 05:50:46] 2025-06-04 09:50:33,950 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 05:50:46] 2025-06-04 09:50:34,263 | INFO     | PID=1907233 has CPU usage=17.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 05:50:46] 2025-06-04 09:50:34,263 | INFO     | .. there are 73 such processes running
[2025-06-04 05:50:46] 2025-06-04 09:50:34,264 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 05:50:46] 2025-06-04 09:50:34,264 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 05:50:46] 2025-06-04 09:50:34,264 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 05:50:46] 2025-06-04 09:50:34,296 | INFO     | [data] control thread has finished
[2025-06-04 05:50:46] 2025-06-04 09:50:34,369 | INFO     | [job] validate thread has finished
[2025-06-04 05:50:46] 2025-06-04 09:50:34,443 | INFO     | [payload] control thread has finished
[2025-06-04 05:50:46] 2025-06-04 09:50:34,559 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 05:50:46] 2025-06-04 09:50:34,705 | INFO     | [job] control thread has finished
[2025-06-04 05:50:46] 2025-06-04 09:50:35,221 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 05:50:46] 2025-06-04 09:50:35,270 | INFO     | [data] copytool_in thread has finished
[2025-06-04 05:50:46] 2025-06-04 09:50:35,316 | INFO     | [payload] failed_post thread has finished
[2025-06-04 05:50:46] 2025-06-04 09:50:35,404 | INFO     | [payload] validate_post thread has finished
[2025-06-04 05:50:46] 2025-06-04 09:50:35,457 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:50:46] 2025-06-04 09:50:35,469 | INFO     | [data] copytool_out thread has finished
[2025-06-04 05:50:46] 2025-06-04 09:50:36,132 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 05:50:46] 2025-06-04 09:50:36,462 | INFO     | [job] queue monitor thread has finished
[2025-06-04 05:50:46] 2025-06-04 09:50:40,140 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 05:50:46] 2025-06-04 09:50:41,205 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139750187239232)>', '<ExcThread(monitor, started 139749679412992)>']
[2025-06-04 05:50:46] 2025-06-04 09:50:41,299 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 05:50:46] 2025-06-04 09:50:41,299 | INFO     | [monitor] control thread has ended
[2025-06-04 05:50:46] 2025-06-04 09:50:46,230 | INFO     | all workflow threads have been joined
[2025-06-04 05:50:46] 2025-06-04 09:50:46,231 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 05:50:46] 2025-06-04 09:50:46,232 | INFO     | traces error code: 0
[2025-06-04 05:50:46] 2025-06-04 09:50:46,232 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 05:50:46] 2025-06-04 09:50:46,418 [wrapper] ==== pilot stdout END ====
[2025-06-04 05:50:46] 2025-06-04 09:50:46,421 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 05:50:46] 2025-06-04 09:50:46,423 [wrapper] pilotpid: 1907233
[2025-06-04 05:50:46] 2025-06-04 09:50:46,425 [wrapper] Pilot exit status: 0
[2025-06-04 05:50:46] 2025-06-04 09:50:46,441 [wrapper] pandaids: 6678286705
[2025-06-04 05:50:46] 2025-06-04 09:50:46,563 [wrapper] cleanup supervisor_pilot 3951769 1907234
[2025-06-04 05:50:46] 2025-06-04 09:50:46,565 [wrapper] Test setup, not cleaning
[2025-06-04 05:50:46] 2025-06-04 09:50:46,568 [wrapper] apfmon messages muted
[2025-06-04 05:50:46] 2025-06-04 09:50:46,571 [wrapper] ==== wrapper stdout END ====
[2025-06-04 05:50:46] 2025-06-04 09:50:46,573 [wrapper] ==== wrapper stderr END ====
[2025-06-04 05:50:46]  *** Error codes and diagnostics ***
[2025-06-04 05:50:46]     "exeErrorCode": 0,
[2025-06-04 05:50:46]     "exeErrorDiag": "",
[2025-06-04 05:50:46]     "pilotErrorCode": 0,
[2025-06-04 05:50:46]     "pilotErrorDiag": "",
[2025-06-04 05:50:46]  *** Listing of results directory ***
[2025-06-04 05:50:46] total 393524
[2025-06-04 05:50:46] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 22:52 pilot3.tar.gz
[2025-06-04 05:50:46] -rwx------. 1 boincer umatlas     37140 Jun  3 23:24 runpilot2-wrapper.sh
[2025-06-04 05:50:46] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 23:24 queuedata.json
[2025-06-04 05:50:46] -rw-r--r--. 1 boincer umatlas       100 Jun  4 04:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 05:50:46] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 04:44 run_atlas
[2025-06-04 05:50:46] -rw-r--r--. 1 boincer umatlas       105 Jun  4 04:44 job.xml
[2025-06-04 05:50:46] -rw-r--r--. 2 boincer umatlas 214243484 Jun  4 04:44 EVNT.45006593._002068.pool.root.1
[2025-06-04 05:50:46] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 04:44 shared
[2025-06-04 05:50:46] -rw-r--r--. 2 boincer umatlas    508877 Jun  4 04:44 input.tar.gz
[2025-06-04 05:50:46] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 04:44 start_atlas.sh
[2025-06-04 05:50:46] -rw-r--r--. 1 boincer umatlas         0 Jun  4 04:44 boinc_lockfile
[2025-06-04 05:50:46] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 04:44 pandaJob.out
[2025-06-04 05:50:46] -rw-------. 1 boincer umatlas    986774 Jun  4 04:44 agis_schedconf.cvmfs.json
[2025-06-04 05:50:46] -rw-------. 1 boincer umatlas   1603667 Jun  4 04:44 agis_ddmendpoints.agis.ALL.json
[2025-06-04 05:50:46] drwx------. 4 boincer umatlas      4096 Jun  4 04:44 pilot3
[2025-06-04 05:50:46] -rw-r--r--. 1 boincer umatlas      7160 Jun  4 05:45 init_data.xml
[2025-06-04 05:50:46] -rw-------. 1 boincer umatlas        95 Jun  4 05:49 pilot_heartbeat.json
[2025-06-04 05:50:46] -rw-------. 1 boincer umatlas 183539901 Jun  4 05:49 HITS.45006595._051618.pool.root.1
[2025-06-04 05:50:46] -rw-r--r--. 1 boincer umatlas       529 Jun  4 05:49 boinc_task_state.xml
[2025-06-04 05:50:46] -rw-------. 1 boincer umatlas      1051 Jun  4 05:50 memory_monitor_summary.json
[2025-06-04 05:50:46] -rw-------. 1 boincer umatlas    297447 Jun  4 05:50 log.45006595._051618.job.log.tgz.1
[2025-06-04 05:50:46] -rw-------. 1 boincer umatlas      7720 Jun  4 05:50 heartbeat.json
[2025-06-04 05:50:46] -rw-r--r--. 1 boincer umatlas        27 Jun  4 05:50 wrapper_checkpoint.txt
[2025-06-04 05:50:46] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 05:50 boinc_mmap_file
[2025-06-04 05:50:46] -rw-------. 1 boincer umatlas      4750 Jun  4 05:50 pilotlog.txt
[2025-06-04 05:50:46] -rw-------. 1 boincer umatlas    380566 Jun  4 05:50 log.45006595._051618.job.log.1
[2025-06-04 05:50:46] -rw-------. 1 boincer umatlas       357 Jun  4 05:50 output.list
[2025-06-04 05:50:46] -rw-r--r--. 1 boincer umatlas       620 Jun  4 05:50 runtime_log
[2025-06-04 05:50:46] -rw-------. 1 boincer umatlas    696320 Jun  4 05:50 result.tar.gz
[2025-06-04 05:50:46] -rw-r--r--. 1 boincer umatlas      8649 Jun  4 05:50 runtime_log.err
[2025-06-04 05:50:46] -rw-------. 1 boincer umatlas       655 Jun  4 05:50 31yLDm8utg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmTdaKDmHyEaOm.diag
[2025-06-04 05:50:46] -rw-r--r--. 1 boincer umatlas     21297 Jun  4 05:50 stderr.txt
[2025-06-04 05:50:46] HITS file was successfully produced:
[2025-06-04 05:50:46] -rw-------. 1 boincer umatlas 183539901 Jun  4 05:49 shared/HITS.pool.root.1
[2025-06-04 05:50:46]  *** Contents of shared directory: ***
[2025-06-04 05:50:46] total 389664
[2025-06-04 05:50:46] -rw-r--r--. 2 boincer umatlas 214243484 Jun  4 04:44 ATLAS.root_0
[2025-06-04 05:50:46] -rw-r--r--. 2 boincer umatlas    508877 Jun  4 04:44 input.tar.gz
[2025-06-04 05:50:46] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 04:44 start_atlas.sh
[2025-06-04 05:50:46] -rw-------. 1 boincer umatlas 183539901 Jun  4 05:49 HITS.pool.root.1
[2025-06-04 05:50:46] -rw-------. 1 boincer umatlas    696320 Jun  4 05:50 result.tar.gz
05:50:48 (1889474): run_atlas exited; CPU time 21016.752954
05:50:48 (1889474): called boinc_finish(0)

</stderr_txt>
]]>

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