Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:27:24 (3163328): wrapper (7.7.26015): starting
04:27:24 (3163328): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 04:27:24] Arguments: --nthreads 8
[2025-06-04 04:27:24] Threads: 8
[2025-06-04 04:27:24] Checking for CVMFS
[2025-06-04 04:27:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 04:27:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 04:27:26] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 04:27:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 04:27:29] 2.12.6.0 5706 31239 401900 146773 1 102 27402149 32935937 28100 16776704 0 83528294 99.634 77983853 10061 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 04:27:29] CVMFS is ok
[2025-06-04 04:27:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 04:27:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 04:27:29] Further information can be found at the LHC@home message board.
[2025-06-04 04:27:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 04:27:29] Checking for apptainer binary...
[2025-06-04 04:27:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 04:27:29] Running /usr/bin/apptainer --version
[2025-06-04 04:27:29] apptainer version 1.4.1-1.el9
[2025-06-04 04:27:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 04:27:31] c6-12-25-4.aglt2.org
[2025-06-04 04:27:31] apptainer works
[2025-06-04 04:27:32] Set ATHENA_PROC_NUMBER=8
[2025-06-04 04:27:32] Set ATHENA_CORE_NUMBER=8
[2025-06-04 04:27:32] Starting ATLAS job with PandaID=6678286699
[2025-06-04 04:27:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:40:13 (3163328): BOINC client no longer exists - exiting
05:40:13 (3163328): timer handler: client dead, exiting
05:48:26 (3438753): wrapper (7.7.26015): starting
05:48:26 (3438753): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 05:48:26] Arguments: --nthreads 8
[2025-06-04 05:48:26] Threads: 8
[2025-06-04 05:48:26] This job has been restarted, cleaning up previous attempt
[2025-06-04 05:48:26] Checking for CVMFS
[2025-06-04 05:48:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 05:48:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 05:48:28] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 05:48:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 05:48:30] 2.12.6.0 5706 31320 409496 146775 0 233 28391960 32935936 25904 16776704 0 83712006 99.633 78248774 10053 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 05:48:30] CVMFS is ok
[2025-06-04 05:48:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 05:48:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 05:48:30] Further information can be found at the LHC@home message board.
[2025-06-04 05:48:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:48:30] Checking for apptainer binary...
[2025-06-04 05:48:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 05:48:30] Running /usr/bin/apptainer --version
[2025-06-04 05:48:31] apptainer version 1.4.1-1.el9
[2025-06-04 05:48:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 05:48:32] c6-12-25-4.aglt2.org
[2025-06-04 05:48:32] apptainer works
[2025-06-04 05:48:32] Set ATHENA_PROC_NUMBER=8
[2025-06-04 05:48:32] Set ATHENA_CORE_NUMBER=8
[2025-06-04 05:48:32] Starting ATLAS job with PandaID=6678286699
[2025-06-04 05:48:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:56:35]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:56:35] 2025-06-04 15:56:08,225 | INFO     | intersect: -32346249178.75089
[2025-06-04 11:56:35] 2025-06-04 15:56:08,263 | INFO     | chi2: 7.402731601787716
[2025-06-04 11:56:35] 2025-06-04 15:56:08,265 | INFO     | sum of square deviations: 13524744110.5
[2025-06-04 11:56:35] 2025-06-04 15:56:08,338 | INFO     | sum of deviations: 296972107641.12506
[2025-06-04 11:56:35] 2025-06-04 15:56:08,339 | INFO     | mean x: 1749041459.125
[2025-06-04 11:56:35] 2025-06-04 15:56:08,339 | INFO     | mean y: 2073851.9517045454
[2025-06-04 11:56:35] 2025-06-04 15:56:08,339 | INFO     | -- intersect: -38402832312.950035
[2025-06-04 11:56:35] 2025-06-04 15:56:08,339 | INFO     | intersect: -38402832312.950035
[2025-06-04 11:56:35] 2025-06-04 15:56:08,340 | INFO     | chi2: 6.040152393976357
[2025-06-04 11:56:35] 2025-06-04 15:56:08,341 | INFO     | current chi2=6.040152393976357 (change=18.40643807054012 %)
[2025-06-04 11:56:35] 2025-06-04 15:56:08,380 | INFO     | right removable region: 351
[2025-06-04 11:56:35] 2025-06-04 15:56:08,382 | INFO     | sum of square deviations: 13524694699.988638
[2025-06-04 11:56:35] 2025-06-04 15:56:08,454 | INFO     | sum of deviations: 175266970096.18762
[2025-06-04 11:56:35] 2025-06-04 15:56:08,455 | INFO     | mean x: 1749041764.1306818
[2025-06-04 11:56:35] 2025-06-04 15:56:08,455 | INFO     | mean y: 2086855.34375
[2025-06-04 11:56:35] 2025-06-04 15:56:08,455 | INFO     | -- intersect: -22663803752.23743
[2025-06-04 11:56:35] 2025-06-04 15:56:08,455 | INFO     | intersect: -22663803752.23743
[2025-06-04 11:56:35] 2025-06-04 15:56:08,497 | INFO     | chi2: 4.322585598647969
[2025-06-04 11:56:35] 2025-06-04 15:56:08,498 | INFO     | current chi2=4.322585598647969 (change=41.60823556531362 %)
[2025-06-04 11:56:35] 2025-06-04 15:56:08,499 | INFO     | sum of square deviations: 12956488848.247772
[2025-06-04 11:56:35] 2025-06-04 15:56:08,584 | INFO     | sum of deviations: 115480390128.48126
[2025-06-04 11:56:35] 2025-06-04 15:56:08,585 | INFO     | mean x: 1749041916.6368876
[2025-06-04 11:56:35] 2025-06-04 15:56:08,632 | INFO     | mean y: 2102892.8530259365
[2025-06-04 11:56:35] 2025-06-04 15:56:08,632 | INFO     | -- intersect: -15587000393.53695
[2025-06-04 11:56:35] 2025-06-04 15:56:08,632 | INFO     | intersect: -15587000393.53695
[2025-06-04 11:56:35] 2025-06-04 15:56:08,633 | INFO     | chi2: 2.964789182148563
[2025-06-04 11:56:35] 2025-06-04 15:56:08,634 | INFO     | current chi2=2.964789182148563 (change=31.411672146506508 %)
[2025-06-04 11:56:35] 2025-06-04 15:56:08,677 | INFO     | sum of square deviations: 12404465290.541029
[2025-06-04 11:56:35] 2025-06-04 15:56:08,761 | INFO     | sum of deviations: 68784249293.5877
[2025-06-04 11:56:35] 2025-06-04 15:56:08,761 | INFO     | mean x: 1749042069.1374269
[2025-06-04 11:56:35] 2025-06-04 15:56:08,762 | INFO     | mean y: 2115776.00877193
[2025-06-04 11:56:35] 2025-06-04 15:56:08,762 | INFO     | -- intersect: -9696532484.167381
[2025-06-04 11:56:35] 2025-06-04 15:56:08,762 | INFO     | intersect: -9696532484.167381
[2025-06-04 11:56:35] 2025-06-04 15:56:08,763 | INFO     | chi2: 2.128703707715691
[2025-06-04 11:56:35] 2025-06-04 15:56:08,804 | INFO     | current chi2=2.128703707715691 (change=28.200503410733784 %)
[2025-06-04 11:56:35] 2025-06-04 15:56:08,806 | INFO     | sum of square deviations: 11868369748.10682
[2025-06-04 11:56:35] 2025-06-04 15:56:08,831 | INFO     | sum of deviations: 33476574134.002945
[2025-06-04 11:56:35] 2025-06-04 15:56:08,832 | INFO     | mean x: 1749042221.6350148
[2025-06-04 11:56:35] 2025-06-04 15:56:08,832 | INFO     | mean y: 2125809.40652819
[2025-06-04 11:56:35] 2025-06-04 15:56:08,833 | INFO     | -- intersect: -4931318533.731305
[2025-06-04 11:56:35] 2025-06-04 15:56:08,833 | INFO     | intersect: -4931318533.731305
[2025-06-04 11:56:35] 2025-06-04 15:56:08,834 | INFO     | chi2: 1.6585099890573254
[2025-06-04 11:56:35] 2025-06-04 15:56:08,835 | INFO     | current chi2=1.6585099890573254 (change=22.08826512370432 %)
[2025-06-04 11:56:35] 2025-06-04 15:56:08,835 | INFO     | left removable region: 40
[2025-06-04 11:56:35] 2025-06-04 15:56:08,836 | INFO     | sum of square deviations: 9328074272.47582
[2025-06-04 11:56:35] 2025-06-04 15:56:08,843 | INFO     | sum of deviations: 33581906919.10291
[2025-06-04 11:56:35] 2025-06-04 15:56:08,843 | INFO     | mean x: 1749042648.6302252
[2025-06-04 11:56:35] 2025-06-04 15:56:08,843 | INFO     | mean y: 2148149.2443729904
[2025-06-04 11:56:35] 2025-06-04 15:56:08,844 | INFO     | -- intersect: -6294562801.820118
[2025-06-04 11:56:35] 2025-06-04 15:56:08,844 | INFO     | intersect: -6294562801.820118
[2025-06-04 11:56:35] 2025-06-04 15:56:08,845 | INFO     | chi2: 0.09005639937199457
[2025-06-04 11:56:35] 2025-06-04 15:56:08,846 | INFO     | -- intersect: -6294562801.820118
[2025-06-04 11:56:35] 2025-06-04 15:56:08,846 | INFO     | current memory leak: 3.60 B/s (using 311 data points, chi2=0.09)
[2025-06-04 11:56:35] 2025-06-04 15:56:08,848 | INFO     | ..............................
[2025-06-04 11:56:35] 2025-06-04 15:56:08,848 | INFO     | . Timing measurements:
[2025-06-04 11:56:35] 2025-06-04 15:56:08,848 | INFO     | . get job = 1 s
[2025-06-04 11:56:35] 2025-06-04 15:56:08,849 | INFO     | . initial setup = 3 s
[2025-06-04 11:56:35] 2025-06-04 15:56:08,849 | INFO     | . payload setup = 50 s
[2025-06-04 11:56:35] 2025-06-04 15:56:08,849 | INFO     | . stage-in = 0 s
[2025-06-04 11:56:35] 2025-06-04 15:56:08,849 | INFO     | . payload execution = 21792 s
[2025-06-04 11:56:35] 2025-06-04 15:56:08,849 | INFO     | . stage-out = 12 s
[2025-06-04 11:56:35] 2025-06-04 15:56:08,850 | INFO     | . log creation = 2 s
[2025-06-04 11:56:35] 2025-06-04 15:56:08,850 | INFO     | ..............................
[2025-06-04 11:56:35] 2025-06-04 15:56:10,196 | INFO     | 
[2025-06-04 11:56:35] 2025-06-04 15:56:10,196 | INFO     | job summary report
[2025-06-04 11:56:35] 2025-06-04 15:56:10,196 | INFO     | --------------------------------------------------
[2025-06-04 11:56:35] 2025-06-04 15:56:10,196 | INFO     | PanDA job id: 6678286699
[2025-06-04 11:56:35] 2025-06-04 15:56:10,197 | INFO     | task id: 45006595
[2025-06-04 11:56:35] 2025-06-04 15:56:10,197 | INFO     | errors: (none)
[2025-06-04 11:56:35] 2025-06-04 15:56:10,197 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:56:35] 2025-06-04 15:56:10,197 | INFO     | pilot state: finished 
[2025-06-04 11:56:35] 2025-06-04 15:56:10,198 | INFO     | transexitcode: 0
[2025-06-04 11:56:35] 2025-06-04 15:56:10,198 | INFO     | exeerrorcode: 0
[2025-06-04 11:56:35] 2025-06-04 15:56:10,198 | INFO     | exeerrordiag: 
[2025-06-04 11:56:35] 2025-06-04 15:56:10,198 | INFO     | exitcode: 0
[2025-06-04 11:56:35] 2025-06-04 15:56:10,198 | INFO     | exitmsg: OK
[2025-06-04 11:56:35] 2025-06-04 15:56:10,198 | INFO     | cpuconsumptiontime: 92949 s
[2025-06-04 11:56:35] 2025-06-04 15:56:10,199 | INFO     | nevents: 400
[2025-06-04 11:56:35] 2025-06-04 15:56:10,211 | INFO     | neventsw: 0
[2025-06-04 11:56:35] 2025-06-04 15:56:10,211 | INFO     | pid: 3474440
[2025-06-04 11:56:35] 2025-06-04 15:56:10,212 | INFO     | pgrp: 3474440
[2025-06-04 11:56:35] 2025-06-04 15:56:10,212 | INFO     | corecount: 8
[2025-06-04 11:56:35] 2025-06-04 15:56:10,212 | INFO     | event service: False
[2025-06-04 11:56:35] 2025-06-04 15:56:10,212 | INFO     | sizes: {0: 2404957, 1: 2405013, 2: 2405041, 4: 2405240, 5: 2405324, 17: 2405324, 29: 2405480, 37: 2405714, 40: 2405742, 21849: 2433683, 21850: 2433682, 21865: 2444
[2025-06-04 11:56:35] 2025-06-04 15:56:10,212 | INFO     | --------------------------------------------------
[2025-06-04 11:56:35] 2025-06-04 15:56:10,213 | INFO     | 
[2025-06-04 11:56:35] 2025-06-04 15:56:10,213 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 11:56:35] 2025-06-04 15:56:10,336 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,337 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,337 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,337 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,337 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,338 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,338 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,338 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,338 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,338 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,339 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,384 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,384 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,385 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,385 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,385 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,387 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,387 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:56:35] 2025-06-04 15:56:10,387 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,387 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:56:35] 2025-06-04 15:56:10,388 | INFO     | job 6678286699 has completed (purged errors)
[2025-06-04 11:56:35] 2025-06-04 15:56:10,400 | INFO     | overall cleanup function is called
[2025-06-04 11:56:35] 2025-06-04 15:56:11,464 | INFO     | --- collectZombieJob: --- 10, [3474440]
[2025-06-04 11:56:35] 2025-06-04 15:56:11,465 | INFO     | zombie collector waiting for pid 3474440
[2025-06-04 11:56:35] 2025-06-04 15:56:11,465 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:56:35] 2025-06-04 15:56:11,465 | INFO     | collected zombie processes
[2025-06-04 11:56:35] 2025-06-04 15:56:11,465 | INFO     | will attempt to kill all subprocesses of pid=3474440
[2025-06-04 11:56:35] 2025-06-04 15:56:16,083 | INFO     | PID=3450060 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 11:56:35] 2025-06-04 15:56:16,084 | INFO     | .. there are 22 such processes running
[2025-06-04 11:56:35] 2025-06-04 15:56:16,135 | INFO     | process IDs to be killed: [3474440] (in reverse order)
[2025-06-04 11:56:35] 2025-06-04 15:56:16,809 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:56:35] 2025-06-04 15:56:16,810 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:56:35] 2025-06-04 15:56:16,983 | INFO     | did not find any defunct processes belonging to 3474440
[2025-06-04 11:56:35] 2025-06-04 15:56:17,081 | INFO     | did not find any defunct processes belonging to 3474440
[2025-06-04 11:56:35] 2025-06-04 15:56:17,082 | INFO     | ready for new job
[2025-06-04 11:56:35] 2025-06-04 15:56:17,082 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:56:35] 2025-06-04 15:56:17,124 | INFO     | **************************************
[2025-06-04 11:56:35] 2025-06-04 15:56:17,162 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:56:35] 2025-06-04 15:56:17,162 | INFO     | **************************************
[2025-06-04 11:56:35] 2025-06-04 15:56:17,162 | INFO     | 
[2025-06-04 11:56:35] 2025-06-04 15:56:17,305 | INFO     | architecture information:
[2025-06-04 11:56:35] 2025-06-04 15:56:17,347 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:56:35] 2025-06-04 15:56:17,585 | INFO     | cat /etc/os-release:
[2025-06-04 11:56:35] NAME="CentOS Linux"
[2025-06-04 11:56:35] VERSION="7 (Core)"
[2025-06-04 11:56:35] ID="centos"
[2025-06-04 11:56:35] ID_LIKE="rhel fedora"
[2025-06-04 11:56:35] VERSION_ID="7"
[2025-06-04 11:56:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:56:35] ANSI_COLOR="0;31"
[2025-06-04 11:56:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:56:35] HOME_URL="https://www.centos.org/"
[2025-06-04 11:56:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:56:35] 
[2025-06-04 11:56:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:56:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:56:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:56:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:56:35] 
[2025-06-04 11:56:35] 2025-06-04 15:56:17,585 | INFO     | **************************************
[2025-06-04 11:56:35] 2025-06-04 15:56:18,089 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 11:56:35] 2025-06-04 15:56:18,148 | INFO     | sufficient remaining disk space (95461310464 B)
[2025-06-04 11:56:35] 2025-06-04 15:56:18,149 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:56:35] 2025-06-04 15:56:18,149 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:56:35] 2025-06-04 15:56:18,149 | INFO     | update_server=False
[2025-06-04 11:56:35] 2025-06-04 15:56:18,150 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:56:35] 2025-06-04 15:56:18,154 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:56:35] 2025-06-04 15:56:18,163 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 11:56:35] 2025-06-04 15:56:18,164 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:56:35] 2025-06-04 15:56:18,164 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:56:35] 2025-06-04 15:56:18,164 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:56:35] 2025-06-04 15:56:18,193 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 11:56:35] 2025-06-04 15:56:18,194 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 11:56:35] 2025-06-04 15:56:18,194 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:56:35] 2025-06-04 15:56:18,194 | INFO     | will abort loop
[2025-06-04 11:56:35] 2025-06-04 15:56:18,725 | INFO     | all payload control threads have been joined
[2025-06-04 11:56:35] 2025-06-04 15:56:18,826 | INFO     | all job control threads have been joined
[2025-06-04 11:56:35] 2025-06-04 15:56:19,156 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:56:35] 2025-06-04 15:56:19,168 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:56:35] 2025-06-04 15:56:19,175 | INFO     | [job] validate thread has finished
[2025-06-04 11:56:35] 2025-06-04 15:56:19,181 | INFO     | all data control threads have been joined
[2025-06-04 11:56:35] 2025-06-04 15:56:19,200 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:56:35] 2025-06-04 15:56:19,209 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:56:35] 2025-06-04 15:56:19,261 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:56:35] 2025-06-04 15:56:19,322 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:56:35] 2025-06-04 15:56:19,457 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:56:35] 2025-06-04 15:56:19,731 | INFO     | [payload] control thread has finished
[2025-06-04 11:56:35] 2025-06-04 15:56:19,782 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:56:35] 2025-06-04 15:56:19,789 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:56:35] 2025-06-04 15:56:19,832 | INFO     | [job] control thread has finished
[2025-06-04 11:56:35] 2025-06-04 15:56:20,161 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:56:35] 2025-06-04 15:56:20,187 | INFO     | [data] control thread has finished
[2025-06-04 11:56:35] 2025-06-04 15:56:20,328 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:56:35] 2025-06-04 15:56:20,444 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:56:35] 2025-06-04 15:56:21,355 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:56:35] 2025-06-04 15:56:25,364 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:56:35] 2025-06-04 15:56:26,683 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139946579900224)>', '<ExcThread(monitor, started 139945855407872)>']
[2025-06-04 11:56:35] 2025-06-04 15:56:27,218 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:56:35] 2025-06-04 15:56:27,219 | INFO     | [monitor] control thread has ended
[2025-06-04 11:56:35] 2025-06-04 15:56:31,711 | INFO     | all workflow threads have been joined
[2025-06-04 11:56:35] 2025-06-04 15:56:31,719 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:56:35] 2025-06-04 15:56:31,720 | INFO     | traces error code: 0
[2025-06-04 11:56:35] 2025-06-04 15:56:31,720 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:56:35] 2025-06-04 15:56:33,516 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:56:35] 2025-06-04 15:56:33,549 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:56:35] 2025-06-04 15:56:33,562 [wrapper] pilotpid: 3450060
[2025-06-04 11:56:35] 2025-06-04 15:56:33,575 [wrapper] Pilot exit status: 0
[2025-06-04 11:56:35] 2025-06-04 15:56:33,725 [wrapper] pandaids: 6678286699 6678286699
[2025-06-04 11:56:35] 2025-06-04 15:56:34,359 [wrapper] cleanup supervisor_pilot  349494 3450061
[2025-06-04 11:56:35] 2025-06-04 15:56:34,383 [wrapper] Test setup, not cleaning
[2025-06-04 11:56:35] 2025-06-04 15:56:34,408 [wrapper] apfmon messages muted
[2025-06-04 11:56:35] 2025-06-04 15:56:34,432 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:56:35] 2025-06-04 15:56:34,457 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:56:35]  *** Error codes and diagnostics ***
[2025-06-04 11:56:35]     "exeErrorCode": 0,
[2025-06-04 11:56:35]     "exeErrorDiag": "",
[2025-06-04 11:56:35]     "pilotErrorCode": 0,
[2025-06-04 11:56:35]     "pilotErrorDiag": "",
[2025-06-04 11:56:35]  *** Listing of results directory ***
[2025-06-04 11:56:35] total 597500
[2025-06-04 11:56:35] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-04 11:56:35] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 22:52 pilot3.tar.gz
[2025-06-04 11:56:35] -rwx------. 1 boincer umatlas     37140 Jun  3 23:24 runpilot2-wrapper.sh
[2025-06-04 11:56:35] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 23:24 queuedata.json
[2025-06-04 11:56:35] -rw-r--r--. 1 boincer umatlas       100 Jun  4 04:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:56:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 04:27 run_atlas
[2025-06-04 11:56:35] -rw-r--r--. 1 boincer umatlas       105 Jun  4 04:27 job.xml
[2025-06-04 11:56:35] -rw-r--r--. 3 boincer umatlas 214243484 Jun  4 04:27 EVNT.45006593._002068.pool.root.1
[2025-06-04 11:56:35] -rw-r--r--. 3 boincer umatlas 214243484 Jun  4 04:27 ATLAS.root_0
[2025-06-04 11:56:35] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 04:27 shared
[2025-06-04 11:56:35] -rw-r--r--. 2 boincer umatlas    508877 Jun  4 04:27 input.tar.gz
[2025-06-04 11:56:35] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 04:27 start_atlas.sh
[2025-06-04 11:56:35] -rw-r--r--. 1 boincer umatlas         0 Jun  4 04:27 boinc_lockfile
[2025-06-04 11:56:35] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 05:48 pandaJob.out
[2025-06-04 11:56:35] -rw-------. 1 boincer umatlas    986766 Jun  4 05:49 agis_schedconf.cvmfs.json
[2025-06-04 11:56:35] -rw-------. 1 boincer umatlas 175630110 Jun  4 11:52 HITS.45006595._051612.pool.root.1
[2025-06-04 11:56:35] -rw-r--r--. 1 boincer umatlas       532 Jun  4 11:53 boinc_task_state.xml
[2025-06-04 11:56:35] -rw-r--r--. 1 boincer umatlas      6860 Jun  4 11:54 init_data.xml
[2025-06-04 11:56:35] -rw-------. 1 boincer umatlas      1049 Jun  4 11:54 memory_monitor_summary.json
[2025-06-04 11:56:35] -rw-------. 1 boincer umatlas   1598969 Jun  4 11:55 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:56:35] -rw-------. 1 boincer umatlas    438644 Jun  4 11:55 log.45006595._051612.job.log.tgz.1
[2025-06-04 11:56:35] -rw-------. 1 boincer umatlas        96 Jun  4 11:56 pilot_heartbeat.json
[2025-06-04 11:56:35] -rw-------. 1 boincer umatlas      6125 Jun  4 11:56 heartbeat.json
[2025-06-04 11:56:35] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 11:56 boinc_mmap_file
[2025-06-04 11:56:35] -rw-r--r--. 1 boincer umatlas        29 Jun  4 11:56 wrapper_checkpoint.txt
[2025-06-04 11:56:35] -rw-------. 1 boincer umatlas      4662 Jun  4 11:56 pilotlog.txt
[2025-06-04 11:56:35] -rw-------. 1 boincer umatlas   1506303 Jun  4 11:56 log.45006595._051612.job.log.1
[2025-06-04 11:56:35] -rw-------. 1 boincer umatlas       357 Jun  4 11:56 output.list
[2025-06-04 11:56:35] -rw-r--r--. 1 boincer umatlas       620 Jun  4 11:56 runtime_log
[2025-06-04 11:56:35] -rw-------. 1 boincer umatlas   1966080 Jun  4 11:56 result.tar.gz
[2025-06-04 11:56:35] -rw-------. 1 boincer umatlas       788 Jun  4 11:56 UHpLDm8utg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmNdaKDmjc4rin.diag
[2025-06-04 11:56:35] -rw-r--r--. 1 boincer umatlas      8755 Jun  4 11:56 runtime_log.err
[2025-06-04 11:56:35] -rw-r--r--. 1 boincer umatlas     23348 Jun  4 11:56 stderr.txt
[2025-06-04 11:56:35] HITS file was successfully produced:
[2025-06-04 11:56:35] -rw-------. 1 boincer umatlas 175630110 Jun  4 11:52 shared/HITS.pool.root.1
[2025-06-04 11:56:35]  *** Contents of shared directory: ***
[2025-06-04 11:56:35] total 383180
[2025-06-04 11:56:35] -rw-r--r--. 3 boincer umatlas 214243484 Jun  4 04:27 ATLAS.root_0
[2025-06-04 11:56:35] -rw-r--r--. 2 boincer umatlas    508877 Jun  4 04:27 input.tar.gz
[2025-06-04 11:56:35] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 04:27 start_atlas.sh
[2025-06-04 11:56:35] -rw-------. 1 boincer umatlas 175630110 Jun  4 11:52 HITS.pool.root.1
[2025-06-04 11:56:35] -rw-------. 1 boincer umatlas   1966080 Jun  4 11:56 result.tar.gz
11:56:36 (3438753): run_atlas exited; CPU time 94821.896070
11:56:36 (3438753): called boinc_finish(0)

</stderr_txt>
]]>

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