Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
11:30:36 (4156578): wrapper (7.7.26015): starting
11:30:36 (4156578): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 11:30:36] Arguments: --nthreads 4
[2025-06-05 11:30:36] Threads: 4
[2025-06-05 11:30:36] Checking for CVMFS
[2025-06-05 11:30:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 11:30:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 11:30:36] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 11:30:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 11:30:36] 2.12.7.0 412895 3748 57740 146814 2 187 4439908 6144001 2751 130560 0 10748567 99.9973 912517 9723 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.46:3128 1
[2025-06-05 11:30:36] CVMFS is ok
[2025-06-05 11:30:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 11:30:36] Checking for apptainer binary...
[2025-06-05 11:30:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 11:30:36] Running /usr/bin/apptainer --version
[2025-06-05 11:30:36] apptainer version 1.4.0
[2025-06-05 11:30:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 11:30:37] Ryzen5
[2025-06-05 11:30:37] apptainer works
[2025-06-05 11:30:37] Set ATHENA_PROC_NUMBER=4
[2025-06-05 11:30:37] Set ATHENA_CORE_NUMBER=4
[2025-06-05 11:30:37] Starting ATLAS job with PandaID=6678286721
[2025-06-05 11:30:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc3/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 13:16:17]  *** The last 200 lines of the pilot log: ***
[2025-06-05 13:16:17] 2025-06-05 11:15:49,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 13:16:17] 2025-06-05 11:15:51,957 | INFO     | monitor loop #472: job 0:6678286721 is in state 'finished'
[2025-06-05 13:16:17] 2025-06-05 11:15:51,957 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 13:16:17] 2025-06-05 11:15:54,460 | INFO     | monitor loop #473: job 0:6678286721 is in state 'finished'
[2025-06-05 13:16:17] 2025-06-05 11:15:54,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 13:16:17] 2025-06-05 11:15:56,961 | INFO     | monitor loop #474: job 0:6678286721 is in state 'finished'
[2025-06-05 13:16:17] 2025-06-05 11:15:56,961 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 13:16:17] 2025-06-05 11:15:57,060 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 13:16:17] 2025-06-05 11:15:57,060 | INFO     | using path: /var/lib/boinc3/slots/0/PanDA_Pilot-6678286721/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 13:16:17] 2025-06-05 11:15:57,060 | INFO     | extracted standard info from prmon json
[2025-06-05 13:16:17] 2025-06-05 11:15:57,060 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 13:16:17] 2025-06-05 11:15:57,061 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 13:16:17] 2025-06-05 11:15:57,061 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 13:16:17] 2025-06-05 11:15:57,061 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 13:16:17] 2025-06-05 11:15:57,062 | INFO     | fitting pss+swap vs Time
[2025-06-05 13:16:17] 2025-06-05 11:15:57,062 | INFO     | sum of square deviations: 338804492.0
[2025-06-05 13:16:17] 2025-06-05 11:15:57,063 | INFO     | sum of deviations: 1421541376.9999998
[2025-06-05 13:16:17] 2025-06-05 11:15:57,063 | INFO     | mean x: 1749118974.0
[2025-06-05 13:16:17] 2025-06-05 11:15:57,063 | INFO     | mean y: 2359620.281553398
[2025-06-05 13:16:17] 2025-06-05 11:15:57,063 | INFO     | -- intersect: -7336518858.451211
[2025-06-05 13:16:17] 2025-06-05 11:15:57,063 | INFO     | intersect: -7336518858.451211
[2025-06-05 13:16:17] 2025-06-05 11:15:57,063 | INFO     | chi2: 1.4891866287302717
[2025-06-05 13:16:17] 2025-06-05 11:15:57,063 | INFO     | sum of square deviations: 291817564.5
[2025-06-05 13:16:17] 2025-06-05 11:15:57,064 | INFO     | sum of deviations: 1487551307.000004
[2025-06-05 13:16:17] 2025-06-05 11:15:57,064 | INFO     | mean x: 1749118821.5
[2025-06-05 13:16:17] 2025-06-05 11:15:57,064 | INFO     | mean y: 2359834.9591836734
[2025-06-05 13:16:17] 2025-06-05 11:15:57,064 | INFO     | -- intersect: -8913840920.39539
[2025-06-05 13:16:17] 2025-06-05 11:15:57,064 | INFO     | intersect: -8913840920.39539
[2025-06-05 13:16:17] 2025-06-05 11:15:57,064 | INFO     | chi2: 1.490997854754655
[2025-06-05 13:16:17] 2025-06-05 11:15:57,064 | INFO     | current chi2=1.490997854754655 (change=-0.12162518716190235 %)
[2025-06-05 13:16:17] 2025-06-05 11:15:57,064 | INFO     | right removable region: 97
[2025-06-05 13:16:17] 2025-06-05 11:15:57,064 | INFO     | sum of square deviations: 291817564.5
[2025-06-05 13:16:17] 2025-06-05 11:15:57,064 | INFO     | sum of deviations: -11155643339.000002
[2025-06-05 13:16:17] 2025-06-05 11:15:57,065 | INFO     | mean x: 1749119126.5
[2025-06-05 13:16:17] 2025-06-05 11:15:57,065 | INFO     | mean y: 2399236.326530612
[2025-06-05 13:16:17] 2025-06-05 11:15:57,065 | INFO     | -- intersect: 66867973850.006874
[2025-06-05 13:16:17] 2025-06-05 11:15:57,065 | INFO     | intersect: 66867973850.006874
[2025-06-05 13:16:17] 2025-06-05 11:15:57,065 | INFO     | chi2: 0.05247851160915915
[2025-06-05 13:16:17] 2025-06-05 11:15:57,065 | INFO     | current chi2=0.05247851160915915 (change=96.47602855164608 %)
[2025-06-05 13:16:17] 2025-06-05 11:15:57,065 | INFO     | sum of square deviations: 249388862.0
[2025-06-05 13:16:17] 2025-06-05 11:15:57,065 | INFO     | sum of deviations: -9055862603.999998
[2025-06-05 13:16:17] 2025-06-05 11:15:57,065 | INFO     | mean x: 1749119279.0
[2025-06-05 13:16:17] 2025-06-05 11:15:57,065 | INFO     | mean y: 2391663.0215053763
[2025-06-05 13:16:17] 2025-06-05 11:15:57,065 | INFO     | -- intersect: 63516791390.4301
[2025-06-05 13:16:17] 2025-06-05 11:15:57,066 | INFO     | intersect: 63516791390.4301
[2025-06-05 13:16:17] 2025-06-05 11:15:57,066 | INFO     | chi2: 0.05114056149382099
[2025-06-05 13:16:17] 2025-06-05 11:15:57,066 | INFO     | current chi2=0.05114056149382099 (change=2.5495199355170843 %)
[2025-06-05 13:16:17] 2025-06-05 11:15:57,066 | INFO     | left removable region: 20
[2025-06-05 13:16:17] 2025-06-05 11:15:57,066 | INFO     | sum of square deviations: 141539398.0
[2025-06-05 13:16:17] 2025-06-05 11:15:57,066 | INFO     | sum of deviations: -3829133968.0
[2025-06-05 13:16:17] 2025-06-05 11:15:57,066 | INFO     | mean x: 1749119401.0
[2025-06-05 13:16:17] 2025-06-05 11:15:57,066 | INFO     | mean y: 2371574.5194805195
[2025-06-05 13:16:17] 2025-06-05 11:15:57,066 | INFO     | -- intersect: 47322146895.71247
[2025-06-05 13:16:17] 2025-06-05 11:15:57,066 | INFO     | intersect: 47322146895.71247
[2025-06-05 13:16:17] 2025-06-05 11:15:57,066 | INFO     | chi2: 0.03010944565077577
[2025-06-05 13:16:17] 2025-06-05 11:15:57,067 | INFO     | -- intersect: 47322146895.71247
[2025-06-05 13:16:17] 2025-06-05 11:15:57,067 | INFO     | current memory leak: -27.05 B/s (using 77 data points, chi2=0.03)
[2025-06-05 13:16:17] 2025-06-05 11:15:57,067 | INFO     | ..............................
[2025-06-05 13:16:17] 2025-06-05 11:15:57,067 | INFO     | . Timing measurements:
[2025-06-05 13:16:17] 2025-06-05 11:15:57,067 | INFO     | . get job = 0 s
[2025-06-05 13:16:17] 2025-06-05 11:15:57,067 | INFO     | . initial setup = 1 s
[2025-06-05 13:16:17] 2025-06-05 11:15:57,067 | INFO     | . payload setup = 3 s
[2025-06-05 13:16:17] 2025-06-05 11:15:57,067 | INFO     | . stage-in = 0 s
[2025-06-05 13:16:17] 2025-06-05 11:15:57,067 | INFO     | . payload execution = 6275 s
[2025-06-05 13:16:17] 2025-06-05 11:15:57,067 | INFO     | . stage-out = 0 s
[2025-06-05 13:16:17] 2025-06-05 11:15:57,067 | INFO     | . log creation = 0 s
[2025-06-05 13:16:17] 2025-06-05 11:15:57,067 | INFO     | ..............................
[2025-06-05 13:16:17] 2025-06-05 11:15:57,154 | INFO     | 
[2025-06-05 13:16:17] 2025-06-05 11:15:57,154 | INFO     | job summary report
[2025-06-05 13:16:17] 2025-06-05 11:15:57,154 | INFO     | --------------------------------------------------
[2025-06-05 13:16:17] 2025-06-05 11:15:57,154 | INFO     | PanDA job id: 6678286721
[2025-06-05 13:16:17] 2025-06-05 11:15:57,154 | INFO     | task id: 45006595
[2025-06-05 13:16:17] 2025-06-05 11:15:57,154 | INFO     | errors: (none)
[2025-06-05 13:16:17] 2025-06-05 11:15:57,154 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 13:16:17] 2025-06-05 11:15:57,154 | INFO     | pilot state: finished 
[2025-06-05 13:16:17] 2025-06-05 11:15:57,154 | INFO     | transexitcode: 0
[2025-06-05 13:16:17] 2025-06-05 11:15:57,154 | INFO     | exeerrorcode: 0
[2025-06-05 13:16:17] 2025-06-05 11:15:57,154 | INFO     | exeerrordiag: 
[2025-06-05 13:16:17] 2025-06-05 11:15:57,154 | INFO     | exitcode: 0
[2025-06-05 13:16:17] 2025-06-05 11:15:57,154 | INFO     | exitmsg: OK
[2025-06-05 13:16:17] 2025-06-05 11:15:57,154 | INFO     | cpuconsumptiontime: 23810 s
[2025-06-05 13:16:17] 2025-06-05 11:15:57,154 | INFO     | nevents: 400
[2025-06-05 13:16:17] 2025-06-05 11:15:57,155 | INFO     | neventsw: 0
[2025-06-05 13:16:17] 2025-06-05 11:15:57,155 | INFO     | pid: 4166835
[2025-06-05 13:16:17] 2025-06-05 11:15:57,155 | INFO     | pgrp: 4166835
[2025-06-05 13:16:17] 2025-06-05 11:15:57,155 | INFO     | corecount: 4
[2025-06-05 13:16:17] 2025-06-05 11:15:57,155 | INFO     | event service: False
[2025-06-05 13:16:17] 2025-06-05 11:15:57,155 | INFO     | sizes: {0: 2397342, 3: 2397548, 11: 2397576, 6282: 2424510, 6283: 2433509, 6301: 2433623}
[2025-06-05 13:16:17] 2025-06-05 11:15:57,155 | INFO     | --------------------------------------------------
[2025-06-05 13:16:17] 2025-06-05 11:15:57,155 | INFO     | 
[2025-06-05 13:16:17] 2025-06-05 11:15:57,155 | INFO     | executing command: ls -lF /var/lib/boinc3/slots/0
[2025-06-05 13:16:17] 2025-06-05 11:15:57,168 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,168 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,168 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,168 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,168 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,168 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,169 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,169 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,169 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,169 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,169 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,169 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,169 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,169 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,169 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,169 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,169 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,169 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 13:16:17] 2025-06-05 11:15:57,169 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,169 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 13:16:17] 2025-06-05 11:15:57,169 | INFO     | job 6678286721 has completed (purged errors)
[2025-06-05 13:16:17] 2025-06-05 11:15:57,169 | INFO     | overall cleanup function is called
[2025-06-05 13:16:17] 2025-06-05 11:15:58,176 | INFO     | --- collectZombieJob: --- 10, [4166835]
[2025-06-05 13:16:17] 2025-06-05 11:15:58,176 | INFO     | zombie collector waiting for pid 4166835
[2025-06-05 13:16:17] 2025-06-05 11:15:58,176 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 13:16:17] 2025-06-05 11:15:58,176 | INFO     | collected zombie processes
[2025-06-05 13:16:17] 2025-06-05 11:15:58,176 | INFO     | will attempt to kill all subprocesses of pid=4166835
[2025-06-05 13:16:17] 2025-06-05 11:15:58,266 | INFO     | process IDs to be killed: [4166835] (in reverse order)
[2025-06-05 13:16:17] 2025-06-05 11:15:58,305 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 13:16:17] 2025-06-05 11:15:58,305 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 13:16:17] 2025-06-05 11:15:58,307 | INFO     | did not find any defunct processes belonging to 4166835
[2025-06-05 13:16:17] 2025-06-05 11:15:58,310 | INFO     | did not find any defunct processes belonging to 4166835
[2025-06-05 13:16:17] 2025-06-05 11:15:58,310 | INFO     | ready for new job
[2025-06-05 13:16:17] 2025-06-05 11:15:58,310 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 13:16:17] 2025-06-05 11:15:58,311 | INFO     | **************************************
[2025-06-05 13:16:17] 2025-06-05 11:15:58,311 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 13:16:17] 2025-06-05 11:15:58,311 | INFO     | **************************************
[2025-06-05 13:16:17] 2025-06-05 11:15:58,311 | INFO     | 
[2025-06-05 13:16:17] 2025-06-05 11:15:58,312 | INFO     | architecture information:
[2025-06-05 13:16:17] 2025-06-05 11:15:58,312 | INFO     | executing command: cat /etc/os-release
[2025-06-05 13:16:17] 2025-06-05 11:15:58,325 | INFO     | cat /etc/os-release:
[2025-06-05 13:16:17] NAME="CentOS Linux"
[2025-06-05 13:16:17] VERSION="7 (Core)"
[2025-06-05 13:16:17] ID="centos"
[2025-06-05 13:16:17] ID_LIKE="rhel fedora"
[2025-06-05 13:16:17] VERSION_ID="7"
[2025-06-05 13:16:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 13:16:17] ANSI_COLOR="0;31"
[2025-06-05 13:16:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 13:16:17] HOME_URL="https://www.centos.org/"
[2025-06-05 13:16:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 13:16:17] 
[2025-06-05 13:16:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 13:16:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 13:16:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 13:16:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 13:16:17] 
[2025-06-05 13:16:17] 2025-06-05 11:15:58,326 | INFO     | **************************************
[2025-06-05 13:16:17] 2025-06-05 11:15:58,828 | INFO     | executing command: df -mP /var/lib/boinc3/slots/0
[2025-06-05 13:16:17] 2025-06-05 11:15:58,840 | INFO     | sufficient remaining disk space (230360612864 B)
[2025-06-05 13:16:17] 2025-06-05 11:15:58,840 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 13:16:17] 2025-06-05 11:15:58,840 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 13:16:17] 2025-06-05 11:15:58,840 | INFO     | update_server=False
[2025-06-05 13:16:17] 2025-06-05 11:15:58,840 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 13:16:17] 2025-06-05 11:15:58,840 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 13:16:17] 2025-06-05 11:15:58,841 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 13:16:17] 2025-06-05 11:15:58,841 | INFO     | aborting loop
[2025-06-05 13:16:17] 2025-06-05 11:15:58,878 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 13:16:17] 2025-06-05 11:15:58,878 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 13:16:17] 2025-06-05 11:15:58,878 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 13:16:17] 2025-06-05 11:15:59,167 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 13:16:17] 2025-06-05 11:15:59,785 | INFO     | all job control threads have been joined
[2025-06-05 13:16:17] 2025-06-05 11:15:59,844 | INFO     | [job] queue monitor thread has finished
[2025-06-05 13:16:17] 2025-06-05 11:15:59,845 | INFO     | [job] job monitor thread has finished
[2025-06-05 13:16:17] 2025-06-05 11:15:59,846 | INFO     | [job] retrieve thread has finished
[2025-06-05 13:16:17] 2025-06-05 11:15:59,869 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 13:16:17] 2025-06-05 11:15:59,892 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 13:16:17] 2025-06-05 11:15:59,918 | INFO     | all data control threads have been joined
[2025-06-05 13:16:17] 2025-06-05 11:15:59,921 | INFO     | all payload control threads have been joined
[2025-06-05 13:16:17] 2025-06-05 11:16:00,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 13:16:17] 2025-06-05 11:16:00,263 | INFO     | [payload] validate_post thread has finished
[2025-06-05 13:16:17] 2025-06-05 11:16:00,394 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 13:16:17] 2025-06-05 11:16:00,413 | INFO     | [payload] failed_post thread has finished
[2025-06-05 13:16:17] 2025-06-05 11:16:00,791 | INFO     | [job] control thread has finished
[2025-06-05 13:16:17] 2025-06-05 11:16:00,850 | INFO     | [data] copytool_in thread has finished
[2025-06-05 13:16:17] 2025-06-05 11:16:00,922 | INFO     | [data] control thread has finished
[2025-06-05 13:16:17] 2025-06-05 11:16:00,926 | INFO     | [payload] control thread has finished
[2025-06-05 13:16:17] 2025-06-05 11:16:01,270 | INFO     | [job] validate thread has finished
[2025-06-05 13:16:17] 2025-06-05 11:16:02,016 | INFO     | [data] copytool_out thread has finished
[2025-06-05 13:16:17] 2025-06-05 11:16:03,173 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 13:16:17] 2025-06-05 11:16:09,302 | INFO     | job.realtimelogging is not enabled
[2025-06-05 13:16:17] 2025-06-05 11:16:10,307 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 13:16:17] 2025-06-05 11:16:11,993 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129709264664384)>', '<ExcThread(monitor, started 129708909897472)>']
[2025-06-05 13:16:17] 2025-06-05 11:16:12,931 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 13:16:17] 2025-06-05 11:16:12,931 | INFO     | [monitor] control thread has ended
[2025-06-05 13:16:17] 2025-06-05 11:16:17,018 | INFO     | all workflow threads have been joined
[2025-06-05 13:16:17] 2025-06-05 11:16:17,018 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 13:16:17] 2025-06-05 11:16:17,018 | INFO     | traces error code: 0
[2025-06-05 13:16:17] 2025-06-05 11:16:17,018 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 13:16:17] 2025-06-05 11:16:17,088 [wrapper] ==== pilot stdout END ====
[2025-06-05 13:16:17] 2025-06-05 11:16:17,090 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 13:16:17] 2025-06-05 11:16:17,091 [wrapper] pilotpid: 4160256
[2025-06-05 13:16:17] 2025-06-05 11:16:17,093 [wrapper] Pilot exit status: 0
[2025-06-05 13:16:17] 2025-06-05 11:16:17,098 [wrapper] pandaids: 6678286721
[2025-06-05 13:16:17] 2025-06-05 11:16:17,122 [wrapper] cleanup supervisor_pilot   63701 4160257
[2025-06-05 13:16:17] 2025-06-05 11:16:17,124 [wrapper] Test setup, not cleaning
[2025-06-05 13:16:17] 2025-06-05 11:16:17,126 [wrapper] apfmon messages muted
[2025-06-05 13:16:17] 2025-06-05 11:16:17,128 [wrapper] ==== wrapper stdout END ====
[2025-06-05 13:16:17] 2025-06-05 11:16:17,129 [wrapper] ==== wrapper stderr END ====
[2025-06-05 13:16:17]  *** Error codes and diagnostics ***
[2025-06-05 13:16:17]     "exeErrorCode": 0,
[2025-06-05 13:16:17]     "exeErrorDiag": "",
[2025-06-05 13:16:17]     "pilotErrorCode": 0,
[2025-06-05 13:16:17]     "pilotErrorDiag": "",
[2025-06-05 13:16:17]  *** Listing of results directory ***
[2025-06-05 13:16:17] insgesamt 394576
[2025-06-05 13:16:17] -rw-r--r-- 1 boinc boinc      5111  4. Jun 05:29 queuedata.json
[2025-06-05 13:16:17] -rwx------ 1 boinc boinc     37140  4. Jun 05:29 runpilot2-wrapper.sh
[2025-06-05 13:16:17] -rw-r--r-- 1 boinc boinc    495897  4. Jun 05:29 pilot3.tar.gz
[2025-06-05 13:16:17] -rw-r--r-- 1 boinc boinc       100  5. Jun 11:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 13:16:17] -rwxr-xr-x 1 boinc boinc      7986  5. Jun 11:30 run_atlas
[2025-06-05 13:16:17] -rw-r--r-- 1 boinc boinc       105  5. Jun 11:30 job.xml
[2025-06-05 13:16:17] -rw-r--r-- 2 boinc boinc     15093  5. Jun 11:30 start_atlas.sh
[2025-06-05 13:16:17] drwxrwx--x 2 boinc boinc      4096  5. Jun 11:30 shared
[2025-06-05 13:16:17] -rw-r--r-- 2 boinc boinc    508879  5. Jun 11:30 input.tar.gz
[2025-06-05 13:16:17] -rw-r--r-- 1 boinc boinc      6965  5. Jun 11:30 init_data.xml
[2025-06-05 13:16:17] -rw-r--r-- 2 boinc boinc 217022712  5. Jun 11:30 EVNT.45006593._002069.pool.root.1
[2025-06-05 13:16:17] -rw-r--r-- 1 boinc boinc         0  5. Jun 11:30 boinc_lockfile
[2025-06-05 13:16:17] -rw-r--r-- 1 boinc boinc      2524  5. Jun 11:30 pandaJob.out
[2025-06-05 13:16:17] -rw------- 1 boinc boinc    983289  5. Jun 11:30 agis_schedconf.cvmfs.json
[2025-06-05 13:16:17] -rw------- 1 boinc boinc   1598969  5. Jun 11:30 agis_ddmendpoints.agis.ALL.json
[2025-06-05 13:16:17] drwx------ 4 boinc boinc      4096  5. Jun 11:30 pilot3
[2025-06-05 13:16:17] -rw------- 1 boinc boinc 181471304  5. Jun 13:15 HITS.45006595._051634.pool.root.1
[2025-06-05 13:16:17] -rw-r--r-- 1 boinc boinc       529  5. Jun 13:15 boinc_task_state.xml
[2025-06-05 13:16:17] -rw------- 1 boinc boinc      1012  5. Jun 13:15 memory_monitor_summary.json
[2025-06-05 13:16:17] -rw------- 1 boinc boinc    248170  5. Jun 13:15 log.45006595._051634.job.log.tgz.1
[2025-06-05 13:16:17] -rw------- 1 boinc boinc        95  5. Jun 13:15 pilot_heartbeat.json
[2025-06-05 13:16:17] -rw-r--r-- 1 boinc boinc      8192  5. Jun 13:15 boinc_mmap_file
[2025-06-05 13:16:17] -rw-r--r-- 1 boinc boinc        27  5. Jun 13:15 wrapper_checkpoint.txt
[2025-06-05 13:16:17] -rw------- 1 boinc boinc      7640  5. Jun 13:15 heartbeat.json
[2025-06-05 13:16:17] -rw------- 1 boinc boinc      4427  5. Jun 13:16 pilotlog.txt
[2025-06-05 13:16:17] -rw------- 1 boinc boinc    612480  5. Jun 13:16 log.45006595._051634.job.log.1
[2025-06-05 13:16:17] -rw------- 1 boinc boinc       357  5. Jun 13:16 output.list
[2025-06-05 13:16:17] -rw-r--r-- 1 boinc boinc       620  5. Jun 13:16 runtime_log
[2025-06-05 13:16:17] -rw------- 1 boinc boinc    880640  5. Jun 13:16 result.tar.gz
[2025-06-05 13:16:17] -rw------- 1 boinc boinc       642  5. Jun 13:16 sSFMDmA0tg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmO4mKDmZ2BlQn.diag
[2025-06-05 13:16:17] -rw-r--r-- 1 boinc boinc      8628  5. Jun 13:16 runtime_log.err
[2025-06-05 13:16:17] -rw-r--r-- 1 boinc boinc     20725  5. Jun 13:16 stderr.txt
[2025-06-05 13:16:17] HITS file was successfully produced:
[2025-06-05 13:16:17] -rw------- 1 boinc boinc 181471304  5. Jun 13:15 shared/HITS.pool.root.1
[2025-06-05 13:16:17]  *** Contents of shared directory: ***
[2025-06-05 13:16:17] insgesamt 390540
[2025-06-05 13:16:17] -rw-r--r-- 2 boinc boinc     15093  5. Jun 11:30 start_atlas.sh
[2025-06-05 13:16:17] -rw-r--r-- 2 boinc boinc    508879  5. Jun 11:30 input.tar.gz
[2025-06-05 13:16:17] -rw-r--r-- 2 boinc boinc 217022712  5. Jun 11:30 ATLAS.root_0
[2025-06-05 13:16:17] -rw------- 1 boinc boinc 181471304  5. Jun 13:15 HITS.pool.root.1
[2025-06-05 13:16:17] -rw------- 1 boinc boinc    880640  5. Jun 13:16 result.tar.gz
13:16:18 (4156578): run_atlas exited; CPU time 23870.498673
13:16:18 (4156578): called boinc_finish(0)

</stderr_txt>
]]>

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