Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
20:14:49 (939600): wrapper (7.7.26015): starting
20:14:49 (939600): wrapper: running run_atlas (--nthreads 2)
[2025-06-04 20:14:49] Arguments: --nthreads 2
[2025-06-04 20:14:49] Threads: 2
[2025-06-04 20:14:49] Checking for CVMFS
[2025-06-04 20:14:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 20:14:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 20:14:49] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 20:14:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 20:14:50] 2.9.2.0 217884 2994 56948 146791 2 55 31819017 36864001 0 130560 0 1955982 99.989 755790 29424 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 20:14:50] CVMFS is ok
[2025-06-04 20:14:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 20:14:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 20:14:50] Further information can be found at the LHC@home message board.
[2025-06-04 20:14:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 20:14:50] Checking for apptainer binary...
[2025-06-04 20:14:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 20:14:50] Running /usr/bin/apptainer --version
[2025-06-04 20:14:50] apptainer version 1.3.6-6.1
[2025-06-04 20:14:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 20:14:50] thA331
[2025-06-04 20:14:50] apptainer works
[2025-06-04 20:14:50] Set ATHENA_PROC_NUMBER=2
[2025-06-04 20:14:50] Set ATHENA_CORE_NUMBER=2
[2025-06-04 20:14:50] Starting ATLAS job with PandaID=6678286400
[2025-06-04 20:14:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 22:05:09]  *** The last 200 lines of the pilot log: ***
[2025-06-04 22:05:09] 2025-06-04 20:04:33,743 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6678286400/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 22:05:09] 2025-06-04 20:04:33,744 | INFO     | extracted standard info from prmon json
[2025-06-04 22:05:09] 2025-06-04 20:04:33,744 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 22:05:09] 2025-06-04 20:04:33,744 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 22:05:09] 2025-06-04 20:04:33,744 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 22:05:09] 2025-06-04 20:04:33,744 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 22:05:09] 2025-06-04 20:04:33,745 | INFO     | fitting pss+swap vs Time
[2025-06-04 22:05:09] 2025-06-04 20:04:33,745 | INFO     | sum of square deviations: 390582207.0
[2025-06-04 22:05:09] 2025-06-04 20:04:33,745 | INFO     | sum of deviations: -13290697171.499996
[2025-06-04 22:05:09] 2025-06-04 20:04:33,745 | INFO     | mean x: 1749064194.5
[2025-06-04 22:05:09] 2025-06-04 20:04:33,745 | INFO     | mean y: 2384820.3981481483
[2025-06-04 22:05:09] 2025-06-04 20:04:33,745 | INFO     | -- intersect: 59519388221.9716
[2025-06-04 22:05:09] 2025-06-04 20:04:33,745 | INFO     | intersect: 59519388221.9716
[2025-06-04 22:05:09] 2025-06-04 20:04:33,745 | INFO     | chi2: 2.199153930807341
[2025-06-04 22:05:09] 2025-06-04 20:04:33,745 | INFO     | sum of square deviations: 338804492.0
[2025-06-04 22:05:09] 2025-06-04 20:04:33,745 | INFO     | sum of deviations: -5739785789.000005
[2025-06-04 22:05:09] 2025-06-04 20:04:33,745 | INFO     | mean x: 1749064042.0
[2025-06-04 22:05:09] 2025-06-04 20:04:33,746 | INFO     | mean y: 2406407.495145631
[2025-06-04 22:05:09] 2025-06-04 20:04:33,746 | INFO     | -- intersect: 29633810858.657227
[2025-06-04 22:05:09] 2025-06-04 20:04:33,746 | INFO     | intersect: 29633810858.657227
[2025-06-04 22:05:09] 2025-06-04 20:04:33,746 | INFO     | chi2: 1.5778597997671524
[2025-06-04 22:05:09] 2025-06-04 20:04:33,746 | INFO     | current chi2=1.5778597997671524 (change=28.25150719722937 %)
[2025-06-04 22:05:09] 2025-06-04 20:04:33,746 | INFO     | sum of square deviations: 291817564.5
[2025-06-04 22:05:09] 2025-06-04 20:04:33,746 | INFO     | sum of deviations: -4255776843.4999986
[2025-06-04 22:05:09] 2025-06-04 20:04:33,746 | INFO     | mean x: 1749063889.5
[2025-06-04 22:05:09] 2025-06-04 20:04:33,746 | INFO     | mean y: 2411227.6428571427
[2025-06-04 22:05:09] 2025-06-04 20:04:33,746 | INFO     | -- intersect: 25510216460.30609
[2025-06-04 22:05:09] 2025-06-04 20:04:33,746 | INFO     | intersect: 25510216460.30609
[2025-06-04 22:05:09] 2025-06-04 20:04:33,746 | INFO     | chi2: 1.5811766799557927
[2025-06-04 22:05:09] 2025-06-04 20:04:33,746 | INFO     | current chi2=1.5811766799557927 (change=-0.21021387255887816 %)
[2025-06-04 22:05:09] 2025-06-04 20:04:33,746 | INFO     | right removable region: 97
[2025-06-04 22:05:09] 2025-06-04 20:04:33,746 | INFO     | sum of square deviations: 338804492.0
[2025-06-04 22:05:09] 2025-06-04 20:04:33,746 | INFO     | sum of deviations: -26713921600.999996
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | mean x: 1749064347.0
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | mean y: 2423228.708737864
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | -- intersect: 137911952010.46484
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | intersect: 137911952010.46484
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | chi2: 0.7158504753340934
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | current chi2=0.7158504753340934 (change=67.44882359956974 %)
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | sum of square deviations: 291817564.5
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | sum of deviations: -22807336390.499996
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | mean x: 1749064499.5
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | mean y: 2410531.1530612246
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | -- intersect: 136702552200.58301
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | intersect: 136702552200.58301
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | chi2: 0.7149636048592981
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | current chi2=0.7149636048592981 (change=0.12389046391027238 %)
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | left removable region: 20
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | sum of square deviations: 141539398.0
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | sum of deviations: -10200867496.0
[2025-06-04 22:05:09] 2025-06-04 20:04:33,747 | INFO     | mean x: 1749064469.0
[2025-06-04 22:05:09] 2025-06-04 20:04:33,748 | INFO     | mean y: 2428932.8571428573
[2025-06-04 22:05:09] 2025-06-04 20:04:33,748 | INFO     | -- intersect: 126059026193.71732
[2025-06-04 22:05:09] 2025-06-04 20:04:33,748 | INFO     | intersect: 126059026193.71732
[2025-06-04 22:05:09] 2025-06-04 20:04:33,748 | INFO     | chi2: 0.04949110550977249
[2025-06-04 22:05:09] 2025-06-04 20:04:33,748 | INFO     | -- intersect: 126059026193.71732
[2025-06-04 22:05:09] 2025-06-04 20:04:33,748 | INFO     | current memory leak: -72.07 B/s (using 77 data points, chi2=0.05)
[2025-06-04 22:05:09] 2025-06-04 20:04:33,748 | INFO     | ..............................
[2025-06-04 22:05:09] 2025-06-04 20:04:33,748 | INFO     | . Timing measurements:
[2025-06-04 22:05:09] 2025-06-04 20:04:33,748 | INFO     | . get job = 0 s
[2025-06-04 22:05:09] 2025-06-04 20:04:33,748 | INFO     | . initial setup = 1 s
[2025-06-04 22:05:09] 2025-06-04 20:04:33,748 | INFO     | . payload setup = 7 s
[2025-06-04 22:05:09] 2025-06-04 20:04:33,748 | INFO     | . stage-in = 0 s
[2025-06-04 22:05:09] 2025-06-04 20:04:33,748 | INFO     | . payload execution = 6533 s
[2025-06-04 22:05:09] 2025-06-04 20:04:33,748 | INFO     | . stage-out = 0 s
[2025-06-04 22:05:09] 2025-06-04 20:04:33,748 | INFO     | . log creation = 0 s
[2025-06-04 22:05:09] 2025-06-04 20:04:33,748 | INFO     | ..............................
[2025-06-04 22:05:09] 2025-06-04 20:04:33,779 | INFO     | 
[2025-06-04 22:05:09] 2025-06-04 20:04:33,779 | INFO     | job summary report
[2025-06-04 22:05:09] 2025-06-04 20:04:33,779 | INFO     | --------------------------------------------------
[2025-06-04 22:05:09] 2025-06-04 20:04:33,779 | INFO     | PanDA job id: 6678286400
[2025-06-04 22:05:09] 2025-06-04 20:04:33,779 | INFO     | task id: 45006595
[2025-06-04 22:05:09] 2025-06-04 20:04:33,779 | INFO     | errors: (none)
[2025-06-04 22:05:09] 2025-06-04 20:04:33,779 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 22:05:09] 2025-06-04 20:04:33,779 | INFO     | pilot state: finished 
[2025-06-04 22:05:09] 2025-06-04 20:04:33,779 | INFO     | transexitcode: 0
[2025-06-04 22:05:09] 2025-06-04 20:04:33,779 | INFO     | exeerrorcode: 0
[2025-06-04 22:05:09] 2025-06-04 20:04:33,779 | INFO     | exeerrordiag: 
[2025-06-04 22:05:09] 2025-06-04 20:04:33,779 | INFO     | exitcode: 0
[2025-06-04 22:05:09] 2025-06-04 20:04:33,779 | INFO     | exitmsg: OK
[2025-06-04 22:05:09] 2025-06-04 20:04:33,779 | INFO     | cpuconsumptiontime: 12707 s
[2025-06-04 22:05:09] 2025-06-04 20:04:33,779 | INFO     | nevents: 400
[2025-06-04 22:05:09] 2025-06-04 20:04:33,780 | INFO     | neventsw: 0
[2025-06-04 22:05:09] 2025-06-04 20:04:33,780 | INFO     | pid: 949683
[2025-06-04 22:05:09] 2025-06-04 20:04:33,780 | INFO     | pgrp: 949683
[2025-06-04 22:05:09] 2025-06-04 20:04:33,780 | INFO     | corecount: 2
[2025-06-04 22:05:09] 2025-06-04 20:04:33,780 | INFO     | event service: False
[2025-06-04 22:05:09] 2025-06-04 20:04:33,780 | INFO     | sizes: {0: 2397345, 7: 2397551, 11: 2397579, 6544: 2424615, 6546: 2433618, 6553: 2433732}
[2025-06-04 22:05:09] 2025-06-04 20:04:33,780 | INFO     | --------------------------------------------------
[2025-06-04 22:05:09] 2025-06-04 20:04:33,780 | INFO     | 
[2025-06-04 22:05:09] 2025-06-04 20:04:33,780 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | job 6678286400 has completed (purged errors)
[2025-06-04 22:05:09] 2025-06-04 20:04:33,791 | INFO     | overall cleanup function is called
[2025-06-04 22:05:09] 2025-06-04 20:04:34,797 | INFO     | --- collectZombieJob: --- 10, [949683]
[2025-06-04 22:05:09] 2025-06-04 20:04:34,798 | INFO     | zombie collector waiting for pid 949683
[2025-06-04 22:05:09] 2025-06-04 20:04:34,798 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 22:05:09] 2025-06-04 20:04:34,798 | INFO     | collected zombie processes
[2025-06-04 22:05:09] 2025-06-04 20:04:34,798 | INFO     | will attempt to kill all subprocesses of pid=949683
[2025-06-04 22:05:09] 2025-06-04 20:04:34,831 | INFO     | process IDs to be killed: [949683] (in reverse order)
[2025-06-04 22:05:09] 2025-06-04 20:04:34,853 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 22:05:09] 2025-06-04 20:04:34,853 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 22:05:09] 2025-06-04 20:04:34,856 | INFO     | did not find any defunct processes belonging to 949683
[2025-06-04 22:05:09] 2025-06-04 20:04:34,859 | INFO     | did not find any defunct processes belonging to 949683
[2025-06-04 22:05:09] 2025-06-04 20:04:34,859 | INFO     | ready for new job
[2025-06-04 22:05:09] 2025-06-04 20:04:34,860 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 22:05:09] 2025-06-04 20:04:34,861 | INFO     | **************************************
[2025-06-04 22:05:09] 2025-06-04 20:04:34,861 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 22:05:09] 2025-06-04 20:04:34,862 | INFO     | **************************************
[2025-06-04 22:05:09] 2025-06-04 20:04:34,862 | INFO     | 
[2025-06-04 22:05:09] 2025-06-04 20:04:34,863 | INFO     | architecture information:
[2025-06-04 22:05:09] 2025-06-04 20:04:34,863 | INFO     | executing command: cat /etc/os-release
[2025-06-04 22:05:09] 2025-06-04 20:04:34,889 | INFO     | cat /etc/os-release:
[2025-06-04 22:05:09] NAME="CentOS Linux"
[2025-06-04 22:05:09] VERSION="7 (Core)"
[2025-06-04 22:05:09] ID="centos"
[2025-06-04 22:05:09] ID_LIKE="rhel fedora"
[2025-06-04 22:05:09] VERSION_ID="7"
[2025-06-04 22:05:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 22:05:09] ANSI_COLOR="0;31"
[2025-06-04 22:05:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 22:05:09] HOME_URL="https://www.centos.org/"
[2025-06-04 22:05:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 22:05:09] 
[2025-06-04 22:05:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 22:05:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 22:05:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 22:05:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 22:05:09] 
[2025-06-04 22:05:09] 2025-06-04 20:04:34,890 | INFO     | **************************************
[2025-06-04 22:05:09] 2025-06-04 20:04:35,393 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 22:05:09] 2025-06-04 20:04:35,406 | INFO     | sufficient remaining disk space (224157237248 B)
[2025-06-04 22:05:09] 2025-06-04 20:04:35,406 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 22:05:09] 2025-06-04 20:04:35,406 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 22:05:09] 2025-06-04 20:04:35,406 | INFO     | update_server=False
[2025-06-04 22:05:09] 2025-06-04 20:04:35,406 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 22:05:09] 2025-06-04 20:04:35,406 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 22:05:09] 2025-06-04 20:04:35,406 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 22:05:09] 2025-06-04 20:04:35,407 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 22:05:09] 2025-06-04 20:04:35,407 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 22:05:09] 2025-06-04 20:04:35,407 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:05:09] 2025-06-04 20:04:35,609 | INFO     | all data control threads have been joined
[2025-06-04 22:05:09] 2025-06-04 20:04:35,659 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:05:09] 2025-06-04 20:04:35,659 | INFO     | aborting loop
[2025-06-04 22:05:09] 2025-06-04 20:04:36,144 | INFO     | all payload control threads have been joined
[2025-06-04 22:05:09] 2025-06-04 20:04:36,412 | INFO     | [job] retrieve thread has finished
[2025-06-04 22:05:09] 2025-06-04 20:04:36,413 | INFO     | [job] queue monitor thread has finished
[2025-06-04 22:05:09] 2025-06-04 20:04:36,436 | INFO     | [job] validate thread has finished
[2025-06-04 22:05:09] 2025-06-04 20:04:36,459 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 22:05:09] 2025-06-04 20:04:36,465 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 22:05:09] 2025-06-04 20:04:36,615 | INFO     | [data] control thread has finished
[2025-06-04 22:05:09] 2025-06-04 20:04:36,664 | INFO     | [job] job monitor thread has finished
[2025-06-04 22:05:09] 2025-06-04 20:04:36,856 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 22:05:09] 2025-06-04 20:04:36,877 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 22:05:09] 2025-06-04 20:04:36,924 | INFO     | all job control threads have been joined
[2025-06-04 22:05:09] 2025-06-04 20:04:37,150 | INFO     | [payload] control thread has finished
[2025-06-04 22:05:09] 2025-06-04 20:04:37,160 | INFO     | [data] copytool_in thread has finished
[2025-06-04 22:05:09] 2025-06-04 20:04:37,189 | INFO     | [payload] validate_post thread has finished
[2025-06-04 22:05:09] 2025-06-04 20:04:37,379 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 22:05:09] 2025-06-04 20:04:37,732 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 22:05:09] 2025-06-04 20:04:37,930 | INFO     | [job] control thread has finished
[2025-06-04 22:05:09] 2025-06-04 20:04:38,011 | INFO     | [payload] failed_post thread has finished
[2025-06-04 22:05:09] 2025-06-04 20:04:38,862 | INFO     | [data] copytool_out thread has finished
[2025-06-04 22:05:09] 2025-06-04 20:04:40,885 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 22:05:09] 2025-06-04 20:04:42,630 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139936984196928)>', '<ExcThread(monitor, started 139936627922688)>']
[2025-06-04 22:05:09] 2025-06-04 20:04:43,449 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 22:05:09] 2025-06-04 20:04:43,449 | INFO     | [monitor] control thread has ended
[2025-06-04 22:05:09] 2025-06-04 20:04:47,656 | INFO     | all workflow threads have been joined
[2025-06-04 22:05:09] 2025-06-04 20:04:47,656 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 22:05:09] 2025-06-04 20:04:47,657 | INFO     | traces error code: 0
[2025-06-04 22:05:09] 2025-06-04 20:04:47,657 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 22:05:09] 2025-06-04 20:04:47,699 [wrapper] ==== pilot stdout END ====
[2025-06-04 22:05:09] 2025-06-04 20:04:47,702 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 22:05:09] 2025-06-04 20:04:47,705 [wrapper] pilotpid: 943220
[2025-06-04 22:05:09] 2025-06-04 20:04:47,708 [wrapper] Pilot exit status: 0
[2025-06-04 22:05:09] 2025-06-04 20:04:47,714 [wrapper] pandaids: 6678286400
[2025-06-04 22:05:09] 2025-06-04 20:04:47,728 [wrapper] cleanup supervisor_pilot  963707 943221
[2025-06-04 22:05:09] 2025-06-04 20:04:47,730 [wrapper] Test setup, not cleaning
[2025-06-04 22:05:09] 2025-06-04 20:04:47,732 [wrapper] apfmon messages muted
[2025-06-04 22:05:09] 2025-06-04 20:04:47,735 [wrapper] ==== wrapper stdout END ====
[2025-06-04 22:05:09] 2025-06-04 20:04:47,737 [wrapper] ==== wrapper stderr END ====
[2025-06-04 22:05:09]  *** Error codes and diagnostics ***
[2025-06-04 22:05:09]     "exeErrorCode": 0,
[2025-06-04 22:05:09]     "exeErrorDiag": "",
[2025-06-04 22:05:09]     "pilotErrorCode": 0,
[2025-06-04 22:05:09]     "pilotErrorDiag": "",
[2025-06-04 22:05:09]  *** Listing of results directory ***
[2025-06-04 22:05:09] total 389840
[2025-06-04 22:05:09] -rw-r--r-- 1 boinc boinc    495897 Jun  4 04:52 pilot3.tar.gz
[2025-06-04 22:05:09] -rw-r--r-- 1 boinc boinc      5111 Jun  4 05:11 queuedata.json
[2025-06-04 22:05:09] -rwx------ 1 boinc boinc     37140 Jun  4 05:13 runpilot2-wrapper.sh
[2025-06-04 22:05:09] -rw-r--r-- 1 boinc boinc       100 Jun  4 20:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 22:05:09] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 20:14 run_atlas
[2025-06-04 22:05:09] -rw-r--r-- 1 boinc boinc       105 Jun  4 20:14 job.xml
[2025-06-04 22:05:09] -rw-r--r-- 2 boinc boinc 215811405 Jun  4 20:14 EVNT.45006593._002056.pool.root.1
[2025-06-04 22:05:09] -rw-r--r-- 1 boinc boinc      6688 Jun  4 20:14 init_data.xml
[2025-06-04 22:05:09] drwxrwx--x 2 boinc boinc      4096 Jun  4 20:14 shared
[2025-06-04 22:05:09] -rw-r--r-- 2 boinc boinc    508883 Jun  4 20:14 input.tar.gz
[2025-06-04 22:05:09] -rw-r--r-- 2 boinc boinc     15093 Jun  4 20:14 start_atlas.sh
[2025-06-04 22:05:09] -rw-r--r-- 1 boinc boinc         0 Jun  4 20:14 boinc_lockfile
[2025-06-04 22:05:09] -rw-r--r-- 1 boinc boinc      2525 Jun  4 20:14 pandaJob.out
[2025-06-04 22:05:09] -rw------- 1 boinc boinc    990984 Jun  4 20:15 agis_schedconf.cvmfs.json
[2025-06-04 22:05:09] -rw------- 1 boinc boinc   1598969 Jun  4 20:15 agis_ddmendpoints.agis.ALL.json
[2025-06-04 22:05:09] drwx------ 4 boinc boinc      4096 Jun  4 20:15 pilot3
[2025-06-04 22:05:09] -rw------- 1 boinc boinc 177803591 Jun  4 22:04 HITS.45006595._051328.pool.root.1
[2025-06-04 22:05:09] -rw-r--r-- 1 boinc boinc       529 Jun  4 22:04 boinc_task_state.xml
[2025-06-04 22:05:09] -rw------- 1 boinc boinc      1027 Jun  4 22:04 memory_monitor_summary.json
[2025-06-04 22:05:09] -rw------- 1 boinc boinc    244552 Jun  4 22:04 log.45006595._051328.job.log.tgz.1
[2025-06-04 22:05:09] -rw------- 1 boinc boinc        95 Jun  4 22:04 pilot_heartbeat.json
[2025-06-04 22:05:09] -rw------- 1 boinc boinc      7654 Jun  4 22:04 heartbeat.json
[2025-06-04 22:05:09] -rw------- 1 boinc boinc      4480 Jun  4 22:04 pilotlog.txt
[2025-06-04 22:05:09] -rw------- 1 boinc boinc    624611 Jun  4 22:04 log.45006595._051328.job.log.1
[2025-06-04 22:05:09] -rw------- 1 boinc boinc       357 Jun  4 22:04 output.list
[2025-06-04 22:05:09] -rw-r--r-- 1 boinc boinc       620 Jun  4 22:04 runtime_log
[2025-06-04 22:05:09] -rw------- 1 boinc boinc    890880 Jun  4 22:04 result.tar.gz
[2025-06-04 22:05:09] -rw-r--r-- 1 boinc boinc      8733 Jun  4 22:04 runtime_log.err
[2025-06-04 22:05:09] -rw------- 1 boinc boinc       659 Jun  4 22:04 FE4KDmLktg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmraaKDmRFN6em.diag
[2025-06-04 22:05:09] -rw-r--r-- 1 boinc boinc      8192 Jun  4 22:05 boinc_mmap_file
[2025-06-04 22:05:09] -rw-r--r-- 1 boinc boinc        27 Jun  4 22:05 wrapper_checkpoint.txt
[2025-06-04 22:05:09] -rw-r--r-- 1 boinc boinc     20812 Jun  4 22:05 stderr.txt
[2025-06-04 22:05:09] HITS file was successfully produced:
[2025-06-04 22:05:09] -rw------- 1 boinc boinc 177803591 Jun  4 22:04 shared/HITS.pool.root.1
[2025-06-04 22:05:09]  *** Contents of shared directory: ***
[2025-06-04 22:05:09] total 385792
[2025-06-04 22:05:09] -rw-r--r-- 2 boinc boinc 215811405 Jun  4 20:14 ATLAS.root_0
[2025-06-04 22:05:09] -rw-r--r-- 2 boinc boinc    508883 Jun  4 20:14 input.tar.gz
[2025-06-04 22:05:09] -rw-r--r-- 2 boinc boinc     15093 Jun  4 20:14 start_atlas.sh
[2025-06-04 22:05:09] -rw------- 1 boinc boinc 177803591 Jun  4 22:04 HITS.pool.root.1
[2025-06-04 22:05:09] -rw------- 1 boinc boinc    890880 Jun  4 22:04 result.tar.gz
22:05:11 (939600): run_atlas exited; CPU time 12733.140035
22:05:11 (939600): called boinc_finish(0)

</stderr_txt>
]]>

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