Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:21:39 (2262531): wrapper (7.7.26015): starting
04:21:39 (2262531): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 04:21:39] Arguments: --nthreads 8
[2025-06-04 04:21:39] Threads: 8
[2025-06-04 04:21:39] Checking for CVMFS
[2025-06-04 04:21:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 04:21:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 04:21:39] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 04:21:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 04:21:39] 2.12.6.0 34999 38401 512488 146773 0 70 19636131 32935937 16491 16776704 1 297971685 99.614 298205146 22522 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 04:21:39] CVMFS is ok
[2025-06-04 04:21:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 04:21:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 04:21:39] Further information can be found at the LHC@home message board.
[2025-06-04 04:21:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 04:21:39] Checking for apptainer binary...
[2025-06-04 04:21:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 04:21:39] Running /usr/bin/apptainer --version
[2025-06-04 04:21:39] apptainer version 1.4.1-1.el9
[2025-06-04 04:21:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 04:21:39] c7-2-16.aglt2.org
[2025-06-04 04:21:39] apptainer works
[2025-06-04 04:21:39] Set ATHENA_PROC_NUMBER=8
[2025-06-04 04:21:39] Set ATHENA_CORE_NUMBER=8
[2025-06-04 04:21:39] Starting ATLAS job with PandaID=6678286536
[2025-06-04 04:21:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 05:12:41]  *** The last 200 lines of the pilot log: ***
[2025-06-04 05:12:41]  is_tar=False
[2025-06-04 05:12:41]  lfn=log.45006595._051449.job.log.tgz.1
[2025-06-04 05:12:41]  mtime=0
[2025-06-04 05:12:41]  protocol_id=None
[2025-06-04 05:12:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 05:12:41]  replicas=None
[2025-06-04 05:12:41]  scope=mc23_13p6TeV
[2025-06-04 05:12:41]  status=None
[2025-06-04 05:12:41]  status_code=0
[2025-06-04 05:12:41]  storage_token=
[2025-06-04 05:12:41]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678286536/log.45006595._051449.job.log.tgz.1
[2025-06-04 05:12:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/b9/log.45006595._051449.job.log.tgz.1
[2025-06-04 05:12:41]  workdir=None
[2025-06-04 05:12:41] ]
[2025-06-04 05:12:41] 2025-06-04 09:12:25,326 | INFO     | transferring file log.45006595._051449.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678286536/log.45006595._051449.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 05:12:41] 2025-06-04 09:12:25,326 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678286536/log.45006595._051449.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._051449.job
[2025-06-04 05:12:41] 2025-06-04 09:12:25,343 | INFO     | adding to output.list: log.45006595._051449.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/b9/log.45006595._051449.job.log.tg
[2025-06-04 05:12:41] 2025-06-04 09:12:25,344 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 05:12:41] 2025-06-04 09:12:25,345 | INFO     | summary of transferred files:
[2025-06-04 05:12:41] 2025-06-04 09:12:25,345 | INFO     |  -- lfn=log.45006595._051449.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 05:12:41] 2025-06-04 09:12:25,345 | INFO     | stage-out finished correctly
[2025-06-04 05:12:41] 2025-06-04 09:12:25,411 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 05:12:41] 2025-06-04 09:12:26,238 | INFO     | job 6678286536 has state=finished
[2025-06-04 05:12:41] 2025-06-04 09:12:26,239 | INFO     | preparing for final server update for job 6678286536 in state='finished'
[2025-06-04 05:12:41] 2025-06-04 09:12:26,239 | INFO     | this job has now completed (state=finished)
[2025-06-04 05:12:41] 2025-06-04 09:12:26,239 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 05:12:41] 2025-06-04 09:12:26,239 | INFO     | log transfer has been attempted: DONE
[2025-06-04 05:12:41] 2025-06-04 09:12:26,240 | INFO     | job 6678286536 has finished - writing final server update
[2025-06-04 05:12:41] 2025-06-04 09:12:26,240 | INFO     | total number of processed events: 400 (read)
[2025-06-04 05:12:41] 2025-06-04 09:12:26,258 | INFO     | executing command: lscpu
[2025-06-04 05:12:41] 2025-06-04 09:12:26,335 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 05:12:41] 2025-06-04 09:12:28,772 | INFO     | PID=2266193 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 05:12:41] 2025-06-04 09:12:28,773 | INFO     | .. there are 29 such processes running
[2025-06-04 05:12:41] 2025-06-04 09:12:29,076 | WARNING  | process 2276638 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 05:12:41] 2025-06-04 09:12:29,077 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678286536/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 05:12:41] 2025-06-04 09:12:29,455 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 05:12:41] 2025-06-04 09:12:29,455 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678286536/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 05:12:41] 2025-06-04 09:12:29,456 | INFO     | extracted standard info from prmon json
[2025-06-04 05:12:41] 2025-06-04 09:12:29,456 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 05:12:41] 2025-06-04 09:12:29,456 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 05:12:41] 2025-06-04 09:12:29,456 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 05:12:41] 2025-06-04 09:12:29,456 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 05:12:41] 2025-06-04 09:12:29,458 | INFO     | fitting pss+swap vs Time
[2025-06-04 05:12:41] 2025-06-04 09:12:29,458 | INFO     | sum of square deviations: 24640462.0
[2025-06-04 05:12:41] 2025-06-04 09:12:29,458 | INFO     | sum of deviations: 2997569096.9999995
[2025-06-04 05:12:41] 2025-06-04 09:12:29,458 | INFO     | mean x: 1749026918.0
[2025-06-04 05:12:41] 2025-06-04 09:12:29,458 | INFO     | mean y: 2440166.511627907
[2025-06-04 05:12:41] 2025-06-04 09:12:29,458 | INFO     | -- intersect: -212770722902.34448
[2025-06-04 05:12:41] 2025-06-04 09:12:29,458 | INFO     | intersect: -212770722902.34448
[2025-06-04 05:12:41] 2025-06-04 09:12:29,458 | INFO     | chi2: 0.6217331995431039
[2025-06-04 05:12:41] 2025-06-04 09:12:29,459 | INFO     | -- intersect: -212770722902.34448
[2025-06-04 05:12:41] 2025-06-04 09:12:29,459 | INFO     | current memory leak: 121.65 B/s (using 43 data points, chi2=0.62)
[2025-06-04 05:12:41] 2025-06-04 09:12:29,459 | INFO     | ..............................
[2025-06-04 05:12:41] 2025-06-04 09:12:29,459 | INFO     | . Timing measurements:
[2025-06-04 05:12:41] 2025-06-04 09:12:29,459 | INFO     | . get job = 0 s
[2025-06-04 05:12:41] 2025-06-04 09:12:29,459 | INFO     | . initial setup = 2 s
[2025-06-04 05:12:41] 2025-06-04 09:12:29,459 | INFO     | . payload setup = 5 s
[2025-06-04 05:12:41] 2025-06-04 09:12:29,460 | INFO     | . stage-in = 0 s
[2025-06-04 05:12:41] 2025-06-04 09:12:29,460 | INFO     | . payload execution = 3012 s
[2025-06-04 05:12:41] 2025-06-04 09:12:29,460 | INFO     | . stage-out = 0 s
[2025-06-04 05:12:41] 2025-06-04 09:12:29,460 | INFO     | . log creation = 0 s
[2025-06-04 05:12:41] 2025-06-04 09:12:29,460 | INFO     | ..............................
[2025-06-04 05:12:41] 2025-06-04 09:12:29,507 | INFO     | 
[2025-06-04 05:12:41] 2025-06-04 09:12:29,507 | INFO     | job summary report
[2025-06-04 05:12:41] 2025-06-04 09:12:29,508 | INFO     | --------------------------------------------------
[2025-06-04 05:12:41] 2025-06-04 09:12:29,508 | INFO     | PanDA job id: 6678286536
[2025-06-04 05:12:41] 2025-06-04 09:12:29,508 | INFO     | task id: 45006595
[2025-06-04 05:12:41] 2025-06-04 09:12:29,508 | INFO     | errors: (none)
[2025-06-04 05:12:41] 2025-06-04 09:12:29,508 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 05:12:41] 2025-06-04 09:12:29,508 | INFO     | pilot state: finished 
[2025-06-04 05:12:41] 2025-06-04 09:12:29,508 | INFO     | transexitcode: 0
[2025-06-04 05:12:41] 2025-06-04 09:12:29,508 | INFO     | exeerrorcode: 0
[2025-06-04 05:12:41] 2025-06-04 09:12:29,509 | INFO     | exeerrordiag: 
[2025-06-04 05:12:41] 2025-06-04 09:12:29,509 | INFO     | exitcode: 0
[2025-06-04 05:12:41] 2025-06-04 09:12:29,509 | INFO     | exitmsg: OK
[2025-06-04 05:12:41] 2025-06-04 09:12:29,509 | INFO     | cpuconsumptiontime: 19151 s
[2025-06-04 05:12:41] 2025-06-04 09:12:29,509 | INFO     | nevents: 400
[2025-06-04 05:12:41] 2025-06-04 09:12:29,509 | INFO     | neventsw: 0
[2025-06-04 05:12:41] 2025-06-04 09:12:29,509 | INFO     | pid: 2276638
[2025-06-04 05:12:41] 2025-06-04 09:12:29,509 | INFO     | pgrp: 2276638
[2025-06-04 05:12:41] 2025-06-04 09:12:29,509 | INFO     | corecount: 8
[2025-06-04 05:12:41] 2025-06-04 09:12:29,509 | INFO     | event service: False
[2025-06-04 05:12:41] 2025-06-04 09:12:29,509 | INFO     | sizes: {0: 2405013, 1: 2405212, 4: 2405418, 11: 2405446, 3020: 2430812, 3022: 2439937, 3026: 2440051}
[2025-06-04 05:12:41] 2025-06-04 09:12:29,509 | INFO     | --------------------------------------------------
[2025-06-04 05:12:41] 2025-06-04 09:12:29,509 | INFO     | 
[2025-06-04 05:12:41] 2025-06-04 09:12:29,510 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 05:12:41] 2025-06-04 09:12:29,527 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,527 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,527 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,527 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,527 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,527 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,527 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,527 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,527 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,527 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,527 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,527 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,527 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,528 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,528 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,528 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,528 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,528 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 05:12:41] 2025-06-04 09:12:29,528 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,528 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 05:12:41] 2025-06-04 09:12:29,528 | INFO     | job 6678286536 has completed (purged errors)
[2025-06-04 05:12:41] 2025-06-04 09:12:29,528 | INFO     | overall cleanup function is called
[2025-06-04 05:12:41] 2025-06-04 09:12:29,542 | INFO     | number of running child processes to parent process 2276638: 1
[2025-06-04 05:12:41] 2025-06-04 09:12:29,542 | INFO     | maximum number of monitored processes: 6
[2025-06-04 05:12:41] 2025-06-04 09:12:29,543 | INFO     | aborting job monitoring since job object (job id=6678286536) has expired
[2025-06-04 05:12:41] 2025-06-04 09:12:30,536 | INFO     | --- collectZombieJob: --- 10, [2276638]
[2025-06-04 05:12:41] 2025-06-04 09:12:30,536 | INFO     | zombie collector waiting for pid 2276638
[2025-06-04 05:12:41] 2025-06-04 09:12:30,536 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 05:12:41] 2025-06-04 09:12:30,537 | INFO     | collected zombie processes
[2025-06-04 05:12:41] 2025-06-04 09:12:30,537 | INFO     | will attempt to kill all subprocesses of pid=2276638
[2025-06-04 05:12:41] 2025-06-04 09:12:30,933 | INFO     | process IDs to be killed: [2276638] (in reverse order)
[2025-06-04 05:12:41] 2025-06-04 09:12:31,021 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 05:12:41] 2025-06-04 09:12:31,022 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 05:12:41] 2025-06-04 09:12:31,034 | INFO     | did not find any defunct processes belonging to 2276638
[2025-06-04 05:12:41] 2025-06-04 09:12:31,047 | INFO     | did not find any defunct processes belonging to 2276638
[2025-06-04 05:12:41] 2025-06-04 09:12:31,047 | INFO     | ready for new job
[2025-06-04 05:12:41] 2025-06-04 09:12:31,047 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 05:12:41] 2025-06-04 09:12:31,048 | INFO     | **************************************
[2025-06-04 05:12:41] 2025-06-04 09:12:31,048 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 05:12:41] 2025-06-04 09:12:31,048 | INFO     | **************************************
[2025-06-04 05:12:41] 2025-06-04 09:12:31,048 | INFO     | 
[2025-06-04 05:12:41] 2025-06-04 09:12:31,064 | INFO     | architecture information:
[2025-06-04 05:12:41] 2025-06-04 09:12:31,065 | INFO     | executing command: cat /etc/os-release
[2025-06-04 05:12:41] 2025-06-04 09:12:31,080 | INFO     | cat /etc/os-release:
[2025-06-04 05:12:41] NAME="CentOS Linux"
[2025-06-04 05:12:41] VERSION="7 (Core)"
[2025-06-04 05:12:41] ID="centos"
[2025-06-04 05:12:41] ID_LIKE="rhel fedora"
[2025-06-04 05:12:41] VERSION_ID="7"
[2025-06-04 05:12:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 05:12:41] ANSI_COLOR="0;31"
[2025-06-04 05:12:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 05:12:41] HOME_URL="https://www.centos.org/"
[2025-06-04 05:12:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 05:12:41] 
[2025-06-04 05:12:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 05:12:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 05:12:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 05:12:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 05:12:41] 
[2025-06-04 05:12:41] 2025-06-04 09:12:31,081 | INFO     | **************************************
[2025-06-04 05:12:41] 2025-06-04 09:12:31,584 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 05:12:41] 2025-06-04 09:12:31,601 | INFO     | sufficient remaining disk space (75519492096 B)
[2025-06-04 05:12:41] 2025-06-04 09:12:31,601 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 05:12:41] 2025-06-04 09:12:31,601 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 05:12:41] 2025-06-04 09:12:31,601 | INFO     | update_server=False
[2025-06-04 05:12:41] 2025-06-04 09:12:31,601 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 05:12:41] 2025-06-04 09:12:31,602 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 05:12:41] 2025-06-04 09:12:31,602 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 05:12:41] 2025-06-04 09:12:31,602 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 05:12:41] 2025-06-04 09:12:31,603 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 05:12:41] 2025-06-04 09:12:31,604 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 05:12:41] 2025-06-04 09:12:31,604 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 05:12:41] 2025-06-04 09:12:31,660 | INFO     | all data control threads have been joined
[2025-06-04 05:12:41] 2025-06-04 09:12:31,803 | INFO     | all job control threads have been joined
[2025-06-04 05:12:41] 2025-06-04 09:12:32,046 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 05:12:41] 2025-06-04 09:12:32,046 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 05:12:41] 2025-06-04 09:12:32,046 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:12:41] 2025-06-04 09:12:32,046 | INFO     | will abort loop
[2025-06-04 05:12:41] 2025-06-04 09:12:32,607 | INFO     | [job] retrieve thread has finished
[2025-06-04 05:12:41] 2025-06-04 09:12:32,666 | INFO     | [data] control thread has finished
[2025-06-04 05:12:41] 2025-06-04 09:12:32,669 | INFO     | [data] copytool_in thread has finished
[2025-06-04 05:12:41] 2025-06-04 09:12:32,801 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 05:12:41] 2025-06-04 09:12:32,808 | INFO     | [job] control thread has finished
[2025-06-04 05:12:41] 2025-06-04 09:12:32,899 | INFO     | [payload] failed_post thread has finished
[2025-06-04 05:12:41] 2025-06-04 09:12:32,997 | INFO     | all payload control threads have been joined
[2025-06-04 05:12:41] 2025-06-04 09:12:33,051 | INFO     | [job] job monitor thread has finished
[2025-06-04 05:12:41] 2025-06-04 09:12:33,325 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 05:12:41] 2025-06-04 09:12:33,369 | INFO     | [job] validate thread has finished
[2025-06-04 05:12:41] 2025-06-04 09:12:33,609 | INFO     | [data] copytool_out thread has finished
[2025-06-04 05:12:41] 2025-06-04 09:12:33,656 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 05:12:41] 2025-06-04 09:12:33,995 | INFO     | [payload] validate_post thread has finished
[2025-06-04 05:12:41] 2025-06-04 09:12:34,003 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 05:12:41] 2025-06-04 09:12:34,003 | INFO     | [payload] control thread has finished
[2025-06-04 05:12:41] 2025-06-04 09:12:34,517 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:12:41] 2025-06-04 09:12:35,522 | INFO     | [job] queue monitor thread has finished
[2025-06-04 05:12:41] 2025-06-04 09:12:35,609 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 05:12:41] 2025-06-04 09:12:36,696 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140439232456512)>', '<ExcThread(monitor, started 140438451255040)>']
[2025-06-04 05:12:41] 2025-06-04 09:12:37,634 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 05:12:41] 2025-06-04 09:12:37,634 | INFO     | [monitor] control thread has ended
[2025-06-04 05:12:41] 2025-06-04 09:12:41,714 | INFO     | all workflow threads have been joined
[2025-06-04 05:12:41] 2025-06-04 09:12:41,715 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 05:12:41] 2025-06-04 09:12:41,715 | INFO     | traces error code: 0
[2025-06-04 05:12:41] 2025-06-04 09:12:41,715 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 05:12:41] 2025-06-04 09:12:41,829 [wrapper] ==== pilot stdout END ====
[2025-06-04 05:12:41] 2025-06-04 09:12:41,831 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 05:12:41] 2025-06-04 09:12:41,833 [wrapper] pilotpid: 2266193
[2025-06-04 05:12:41] 2025-06-04 09:12:41,835 [wrapper] Pilot exit status: 0
[2025-06-04 05:12:41] 2025-06-04 09:12:41,844 [wrapper] pandaids: 6678286536
[2025-06-04 05:12:41] 2025-06-04 09:12:41,931 [wrapper] cleanup supervisor_pilot 2463652 2266194
[2025-06-04 05:12:41] 2025-06-04 09:12:41,934 [wrapper] Test setup, not cleaning
[2025-06-04 05:12:41] 2025-06-04 09:12:41,937 [wrapper] apfmon messages muted
[2025-06-04 05:12:41] 2025-06-04 09:12:41,939 [wrapper] ==== wrapper stdout END ====
[2025-06-04 05:12:41] 2025-06-04 09:12:41,942 [wrapper] ==== wrapper stderr END ====
[2025-06-04 05:12:41]  *** Error codes and diagnostics ***
[2025-06-04 05:12:41]     "exeErrorCode": 0,
[2025-06-04 05:12:41]     "exeErrorDiag": "",
[2025-06-04 05:12:41]     "pilotErrorCode": 0,
[2025-06-04 05:12:41]     "pilotErrorDiag": "",
[2025-06-04 05:12:41]  *** Listing of results directory ***
[2025-06-04 05:12:41] total 390688
[2025-06-04 05:12:41] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 22:52 pilot3.tar.gz
[2025-06-04 05:12:41] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 23:13 queuedata.json
[2025-06-04 05:12:41] -rwx------. 1 boincer umatlas     37140 Jun  3 23:13 runpilot2-wrapper.sh
[2025-06-04 05:12:41] -rw-r--r--. 1 boincer umatlas       100 Jun  4 04:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 05:12:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 04:21 run_atlas
[2025-06-04 05:12:41] -rw-r--r--. 1 boincer umatlas       105 Jun  4 04:21 job.xml
[2025-06-04 05:12:41] -rw-r--r--. 2 boincer umatlas 215195836 Jun  4 04:21 EVNT.45006593._002061.pool.root.1
[2025-06-04 05:12:41] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 04:21 start_atlas.sh
[2025-06-04 05:12:41] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 04:21 shared
[2025-06-04 05:12:41] -rw-r--r--. 2 boincer umatlas    508887 Jun  4 04:21 input.tar.gz
[2025-06-04 05:12:41] -rw-r--r--. 1 boincer umatlas         0 Jun  4 04:21 boinc_lockfile
[2025-06-04 05:12:41] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 04:21 pandaJob.out
[2025-06-04 05:12:41] -rw-------. 1 boincer umatlas    986774 Jun  4 04:21 agis_schedconf.cvmfs.json
[2025-06-04 05:12:41] -rw-------. 1 boincer umatlas   1603667 Jun  4 04:21 agis_ddmendpoints.agis.ALL.json
[2025-06-04 05:12:41] drwx------. 4 boincer umatlas      4096 Jun  4 04:21 pilot3
[2025-06-04 05:12:41] -rw-r--r--. 1 boincer umatlas      6933 Jun  4 05:03 init_data.xml
[2025-06-04 05:12:41] -rw-------. 1 boincer umatlas        95 Jun  4 05:11 pilot_heartbeat.json
[2025-06-04 05:12:41] -rw-------. 1 boincer umatlas 179799826 Jun  4 05:12 HITS.45006595._051449.pool.root.1
[2025-06-04 05:12:41] -rw-r--r--. 1 boincer umatlas       529 Jun  4 05:12 boinc_task_state.xml
[2025-06-04 05:12:41] -rw-------. 1 boincer umatlas      1029 Jun  4 05:12 memory_monitor_summary.json
[2025-06-04 05:12:41] -rw-------. 1 boincer umatlas    295423 Jun  4 05:12 log.45006595._051449.job.log.tgz.1
[2025-06-04 05:12:41] -rw-------. 1 boincer umatlas      7688 Jun  4 05:12 heartbeat.json
[2025-06-04 05:12:41] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 05:12 boinc_mmap_file
[2025-06-04 05:12:41] -rw-r--r--. 1 boincer umatlas        27 Jun  4 05:12 wrapper_checkpoint.txt
[2025-06-04 05:12:41] -rw-------. 1 boincer umatlas      4662 Jun  4 05:12 pilotlog.txt
[2025-06-04 05:12:41] -rw-------. 1 boincer umatlas    316294 Jun  4 05:12 log.45006595._051449.job.log.1
[2025-06-04 05:12:41] -rw-------. 1 boincer umatlas       357 Jun  4 05:12 output.list
[2025-06-04 05:12:41] -rw-r--r--. 1 boincer umatlas       620 Jun  4 05:12 runtime_log
[2025-06-04 05:12:41] -rw-------. 1 boincer umatlas    634880 Jun  4 05:12 result.tar.gz
[2025-06-04 05:12:41] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 05:12 runtime_log.err
[2025-06-04 05:12:41] -rw-------. 1 boincer umatlas       649 Jun  4 05:12 G9nNDmZktg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm3baKDmdxAZnm.diag
[2025-06-04 05:12:41] -rw-r--r--. 1 boincer umatlas     21585 Jun  4 05:12 stderr.txt
[2025-06-04 05:12:42] HITS file was successfully produced:
[2025-06-04 05:12:42] -rw-------. 1 boincer umatlas 179799826 Jun  4 05:12 shared/HITS.pool.root.1
[2025-06-04 05:12:42]  *** Contents of shared directory: ***
[2025-06-04 05:12:42] total 386888
[2025-06-04 05:12:42] -rw-r--r--. 2 boincer umatlas 215195836 Jun  4 04:21 ATLAS.root_0
[2025-06-04 05:12:42] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 04:21 start_atlas.sh
[2025-06-04 05:12:42] -rw-r--r--. 2 boincer umatlas    508887 Jun  4 04:21 input.tar.gz
[2025-06-04 05:12:42] -rw-------. 1 boincer umatlas 179799826 Jun  4 05:12 HITS.pool.root.1
[2025-06-04 05:12:42] -rw-------. 1 boincer umatlas    634880 Jun  4 05:12 result.tar.gz
05:12:43 (2262531): run_atlas exited; CPU time 19207.488799
05:12:43 (2262531): called boinc_finish(0)

</stderr_txt>
]]>

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