Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:44:55 (31712): wrapper (7.7.26015): starting
00:44:55 (31712): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 00:44:55] Arguments: --nthreads 8
[2025-06-05 00:44:55] Threads: 8
[2025-06-05 00:44:55] Checking for CVMFS
[2025-06-05 00:44:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:44:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:44:56] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:44:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:44:57] 2.11.2.0 2200 33822 91720 146797 3 158 16633338 25165825 2811 130560 0 18009323 99.757 21446486 2217 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 00:44:57] CVMFS is ok
[2025-06-05 00:44:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:44:57] Checking for apptainer binary...
[2025-06-05 00:44:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:44:57] Running /usr/bin/apptainer --version
[2025-06-05 00:44:57] apptainer version 1.3.2-1.el7
[2025-06-05 00:44:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:45:00] cg-vwn296.simple-grid.lan
[2025-06-05 00:45:00] apptainer works
[2025-06-05 00:45:00] Set ATHENA_PROC_NUMBER=8
[2025-06-05 00:45:00] Set ATHENA_CORE_NUMBER=8
[2025-06-05 00:45:11] Starting ATLAS job with PandaID=6678286409
[2025-06-05 00:45:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/28 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 06:51:36]  *** The last 200 lines of the pilot log: ***
[2025-06-05 06:51:36] 2025-06-05 02:27:45,195 | INFO     | extracted standard info from prmon json
[2025-06-05 06:51:36] 2025-06-05 02:27:45,195 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 06:51:36] 2025-06-05 02:27:45,195 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 06:51:36] 2025-06-05 02:27:45,195 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 06:51:36] 2025-06-05 02:27:45,195 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 06:51:36] 2025-06-05 02:27:45,200 | INFO     | fitting pss+swap vs Time
[2025-06-05 06:51:36] 2025-06-05 02:27:45,201 | INFO     | sum of square deviations: 3124858590.0
[2025-06-05 06:51:36] 2025-06-05 02:27:45,203 | INFO     | sum of deviations: -9871683466.499998
[2025-06-05 06:51:36] 2025-06-05 02:27:45,213 | INFO     | mean x: 1749083759.5
[2025-06-05 06:51:36] 2025-06-05 02:27:45,213 | INFO     | mean y: 2480204.847222222
[2025-06-05 06:51:36] 2025-06-05 02:27:45,213 | INFO     | -- intersect: 5527978633.939276
[2025-06-05 06:51:36] 2025-06-05 02:27:45,213 | INFO     | intersect: 5527978633.939276
[2025-06-05 06:51:36] 2025-06-05 02:27:45,214 | INFO     | chi2: 2.450151416179314
[2025-06-05 06:51:36] 2025-06-05 02:27:45,214 | INFO     | sum of square deviations: 2912836010.0
[2025-06-05 06:51:36] 2025-06-05 02:27:45,216 | INFO     | sum of deviations: 4482298117.000002
[2025-06-05 06:51:36] 2025-06-05 02:27:45,216 | INFO     | mean x: 1749083607.0
[2025-06-05 06:51:36] 2025-06-05 02:27:45,216 | INFO     | mean y: 2490337.146919431
[2025-06-05 06:51:36] 2025-06-05 02:27:45,216 | INFO     | -- intersect: -2689015168.558385
[2025-06-05 06:51:36] 2025-06-05 02:27:45,217 | INFO     | intersect: -2689015168.558385
[2025-06-05 06:51:36] 2025-06-05 02:27:45,217 | INFO     | chi2: 1.6809739742329697
[2025-06-05 06:51:36] 2025-06-05 02:27:45,217 | INFO     | current chi2=1.6809739742329697 (change=31.39305746033339 %)
[2025-06-05 06:51:36] 2025-06-05 02:27:45,218 | INFO     | sum of square deviations: 2710627567.5
[2025-06-05 06:51:36] 2025-06-05 02:27:45,219 | INFO     | sum of deviations: 4358780467.500003
[2025-06-05 06:51:36] 2025-06-05 02:27:45,219 | INFO     | mean x: 1749083454.5
[2025-06-05 06:51:36] 2025-06-05 02:27:45,220 | INFO     | mean y: 2490243.995145631
[2025-06-05 06:51:36] 2025-06-05 02:27:45,220 | INFO     | -- intersect: -2810094889.0238814
[2025-06-05 06:51:36] 2025-06-05 02:27:45,220 | INFO     | intersect: -2810094889.0238814
[2025-06-05 06:51:36] 2025-06-05 02:27:45,220 | INFO     | chi2: 1.6813185175699554
[2025-06-05 06:51:36] 2025-06-05 02:27:45,220 | INFO     | current chi2=1.6813185175699554 (change=-0.02049664910148077 %)
[2025-06-05 06:51:36] 2025-06-05 02:27:45,221 | INFO     | right removable region: 205
[2025-06-05 06:51:36] 2025-06-05 02:27:45,221 | INFO     | sum of square deviations: 2912836010.0
[2025-06-05 06:51:36] 2025-06-05 02:27:45,223 | INFO     | sum of deviations: -43546701045.0
[2025-06-05 06:51:36] 2025-06-05 02:27:45,223 | INFO     | mean x: 1749083912.0
[2025-06-05 06:51:36] 2025-06-05 02:27:45,223 | INFO     | mean y: 2504188.8246445497
[2025-06-05 06:51:36] 2025-06-05 02:27:45,223 | INFO     | -- intersect: 26151190196.892464
[2025-06-05 06:51:36] 2025-06-05 02:27:45,223 | INFO     | intersect: 26151190196.892464
[2025-06-05 06:51:36] 2025-06-05 02:27:45,224 | INFO     | chi2: 0.9673964939802387
[2025-06-05 06:51:36] 2025-06-05 02:27:45,224 | INFO     | current chi2=0.9673964939802387 (change=60.51686897421364 %)
[2025-06-05 06:51:36] 2025-06-05 02:27:45,225 | INFO     | sum of square deviations: 2710627567.5
[2025-06-05 06:51:36] 2025-06-05 02:27:45,226 | INFO     | sum of deviations: -39180661638.5
[2025-06-05 06:51:36] 2025-06-05 02:27:45,226 | INFO     | mean x: 1749084064.5
[2025-06-05 06:51:36] 2025-06-05 02:27:45,227 | INFO     | mean y: 2500866.2572815535
[2025-06-05 06:51:36] 2025-06-05 02:27:45,227 | INFO     | -- intersect: 25284569022.773518
[2025-06-05 06:51:36] 2025-06-05 02:27:45,227 | INFO     | intersect: 25284569022.773518
[2025-06-05 06:51:36] 2025-06-05 02:27:45,227 | INFO     | chi2: 0.9548928273550839
[2025-06-05 06:51:36] 2025-06-05 02:27:45,227 | INFO     | current chi2=0.9548928273550839 (change=1.2925069196509111 %)
[2025-06-05 06:51:36] 2025-06-05 02:27:45,228 | INFO     | left removable region: 20
[2025-06-05 06:51:36] 2025-06-05 02:27:45,228 | INFO     | sum of square deviations: 1963274020.0
[2025-06-05 06:51:36] 2025-06-05 02:27:45,229 | INFO     | sum of deviations: -10470449737.0
[2025-06-05 06:51:36] 2025-06-05 02:27:45,229 | INFO     | mean x: 1749084034.0
[2025-06-05 06:51:36] 2025-06-05 02:27:45,230 | INFO     | mean y: 2500100.6054054056
[2025-06-05 06:51:36] 2025-06-05 02:27:45,230 | INFO     | -- intersect: 9330640888.505304
[2025-06-05 06:51:36] 2025-06-05 02:27:45,230 | INFO     | intersect: 9330640888.505304
[2025-06-05 06:51:36] 2025-06-05 02:27:45,230 | INFO     | chi2: 0.10696998249438315
[2025-06-05 06:51:36] 2025-06-05 02:27:45,230 | INFO     | -- intersect: 9330640888.505304
[2025-06-05 06:51:36] 2025-06-05 02:27:45,231 | INFO     | current memory leak: -5.33 B/s (using 185 data points, chi2=0.11)
[2025-06-05 06:51:36] 2025-06-05 02:27:45,231 | INFO     | ..............................
[2025-06-05 06:51:36] 2025-06-05 02:27:45,232 | INFO     | . Timing measurements:
[2025-06-05 06:51:36] 2025-06-05 02:27:45,232 | INFO     | . get job = 0 s
[2025-06-05 06:51:36] 2025-06-05 02:27:45,232 | INFO     | . initial setup = 2 s
[2025-06-05 06:51:36] 2025-06-05 02:27:45,232 | INFO     | . payload setup = 13 s
[2025-06-05 06:51:36] 2025-06-05 02:27:45,232 | INFO     | . stage-in = 0 s
[2025-06-05 06:51:36] 2025-06-05 02:27:45,232 | INFO     | . payload execution = 13184 s
[2025-06-05 06:51:36] 2025-06-05 02:27:45,232 | INFO     | . stage-out = 5 s
[2025-06-05 06:51:36] 2025-06-05 02:27:45,232 | INFO     | . log creation = 1 s
[2025-06-05 06:51:36] 2025-06-05 02:27:45,232 | INFO     | ..............................
[2025-06-05 06:51:36] 2025-06-05 02:27:45,422 | INFO     | 
[2025-06-05 06:51:36] 2025-06-05 02:27:45,422 | INFO     | job summary report
[2025-06-05 06:51:36] 2025-06-05 02:27:45,422 | INFO     | --------------------------------------------------
[2025-06-05 06:51:36] 2025-06-05 02:27:45,422 | INFO     | PanDA job id: 6678286409
[2025-06-05 06:51:36] 2025-06-05 02:27:45,422 | INFO     | task id: 45006595
[2025-06-05 06:51:36] 2025-06-05 02:27:45,422 | INFO     | errors: (none)
[2025-06-05 06:51:36] 2025-06-05 02:27:45,423 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 06:51:36] 2025-06-05 02:27:45,423 | INFO     | pilot state: finished 
[2025-06-05 06:51:36] 2025-06-05 02:27:45,423 | INFO     | transexitcode: 0
[2025-06-05 06:51:36] 2025-06-05 02:27:45,423 | INFO     | exeerrorcode: 0
[2025-06-05 06:51:36] 2025-06-05 02:27:45,423 | INFO     | exeerrordiag: 
[2025-06-05 06:51:36] 2025-06-05 02:27:45,423 | INFO     | exitcode: 0
[2025-06-05 06:51:36] 2025-06-05 02:27:45,423 | INFO     | exitmsg: OK
[2025-06-05 06:51:36] 2025-06-05 02:27:45,423 | INFO     | cpuconsumptiontime: 50143 s
[2025-06-05 06:51:36] 2025-06-05 02:27:45,423 | INFO     | nevents: 400
[2025-06-05 06:51:36] 2025-06-05 02:27:45,423 | INFO     | neventsw: 0
[2025-06-05 06:51:36] 2025-06-05 02:27:45,423 | INFO     | pid: 11582
[2025-06-05 06:51:36] 2025-06-05 02:27:45,424 | INFO     | pgrp: 11582
[2025-06-05 06:51:36] 2025-06-05 02:27:45,424 | INFO     | corecount: 8
[2025-06-05 06:51:36] 2025-06-05 02:27:45,424 | INFO     | event service: False
[2025-06-05 06:51:36] 2025-06-05 02:27:45,424 | INFO     | sizes: {0: 2397172, 1: 2397371, 2: 2397371, 12: 2397399, 16: 2397633, 23: 2397661, 13201: 2427490, 13202: 2427489, 13208: 2436488, 13211: 2436544, 13300: 2436714}
[2025-06-05 06:51:36] 2025-06-05 02:27:45,424 | INFO     | --------------------------------------------------
[2025-06-05 06:51:36] 2025-06-05 02:27:45,424 | INFO     | 
[2025-06-05 06:51:36] 2025-06-05 02:27:45,424 | INFO     | executing command: ls -lF /var/lib/boinc/slots/28
[2025-06-05 06:51:36] 2025-06-05 02:27:45,791 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,791 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,792 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,792 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,792 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,792 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,792 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,792 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,792 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,792 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,792 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,793 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,793 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,793 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,793 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,793 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,793 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,793 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 06:51:36] 2025-06-05 02:27:45,793 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,794 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 06:51:36] 2025-06-05 02:27:45,794 | INFO     | job 6678286409 has completed (purged errors)
[2025-06-05 06:51:36] 2025-06-05 02:27:45,794 | INFO     | overall cleanup function is called
[2025-06-05 06:51:36] 2025-06-05 02:27:46,803 | INFO     | --- collectZombieJob: --- 10, [11582]
[2025-06-05 06:51:36] 2025-06-05 02:27:46,804 | INFO     | zombie collector waiting for pid 11582
[2025-06-05 06:51:36] 2025-06-05 02:27:46,804 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 06:51:36] 2025-06-05 02:27:46,804 | INFO     | collected zombie processes
[2025-06-05 06:51:36] 2025-06-05 02:27:46,804 | INFO     | will attempt to kill all subprocesses of pid=11582
[2025-06-05 06:51:36] 2025-06-05 02:27:46,926 | INFO     | process IDs to be killed: [11582] (in reverse order)
[2025-06-05 06:51:36] 2025-06-05 02:27:47,613 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 06:51:36] 2025-06-05 02:27:47,614 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 06:51:36] 2025-06-05 02:27:47,617 | INFO     | did not find any defunct processes belonging to 11582
[2025-06-05 06:51:36] 2025-06-05 02:27:47,620 | INFO     | did not find any defunct processes belonging to 11582
[2025-06-05 06:51:36] 2025-06-05 02:27:47,621 | INFO     | ready for new job
[2025-06-05 06:51:36] 2025-06-05 02:27:47,621 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 06:51:36] 2025-06-05 02:27:47,623 | INFO     | **************************************
[2025-06-05 06:51:36] 2025-06-05 02:27:47,623 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 06:51:36] 2025-06-05 02:27:47,623 | INFO     | **************************************
[2025-06-05 06:51:36] 2025-06-05 02:27:47,623 | INFO     | 
[2025-06-05 06:51:36] 2025-06-05 02:27:47,624 | INFO     | pilot is running in a VM
[2025-06-05 06:51:36] 2025-06-05 02:27:47,624 | INFO     | architecture information:
[2025-06-05 06:51:36] 2025-06-05 02:27:47,630 | INFO     | executing command: cat /etc/os-release
[2025-06-05 06:51:36] 2025-06-05 02:27:47,711 | INFO     | cat /etc/os-release:
[2025-06-05 06:51:36] NAME="CentOS Linux"
[2025-06-05 06:51:36] VERSION="7 (Core)"
[2025-06-05 06:51:36] ID="centos"
[2025-06-05 06:51:36] ID_LIKE="rhel fedora"
[2025-06-05 06:51:36] VERSION_ID="7"
[2025-06-05 06:51:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 06:51:36] ANSI_COLOR="0;31"
[2025-06-05 06:51:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 06:51:36] HOME_URL="https://www.centos.org/"
[2025-06-05 06:51:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 06:51:36] 
[2025-06-05 06:51:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 06:51:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 06:51:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 06:51:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 06:51:36] 
[2025-06-05 06:51:36] 2025-06-05 02:27:47,712 | INFO     | **************************************
[2025-06-05 06:51:36] 2025-06-05 02:27:48,215 | INFO     | executing command: df -mP /var/lib/boinc/slots/28
[2025-06-05 06:51:36] 2025-06-05 02:27:48,268 | INFO     | sufficient remaining disk space (497323868160 B)
[2025-06-05 06:51:36] 2025-06-05 02:27:48,269 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 06:51:36] 2025-06-05 02:27:48,269 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 06:51:36] 2025-06-05 02:27:48,269 | INFO     | update_server=False
[2025-06-05 06:51:36] 2025-06-05 02:27:48,269 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 06:51:36] 2025-06-05 02:27:48,269 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:51:36] 2025-06-05 02:27:48,270 | INFO     | aborting loop
[2025-06-05 06:51:36] 2025-06-05 02:27:48,270 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 06:51:36] 2025-06-05 02:27:48,275 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 06:51:36] 2025-06-05 02:27:48,276 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 06:51:36] 2025-06-05 02:27:48,276 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 06:51:36] 2025-06-05 02:27:48,276 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 06:51:36] 2025-06-05 02:27:48,562 | INFO     | all data control threads have been joined
[2025-06-05 06:51:36] 2025-06-05 02:27:48,784 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 06:51:36] 2025-06-05 02:27:49,276 | INFO     | [job] retrieve thread has finished
[2025-06-05 06:51:36] 2025-06-05 02:27:49,279 | INFO     | [job] job monitor thread has finished
[2025-06-05 06:51:36] 2025-06-05 02:27:49,334 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 06:51:36] 2025-06-05 02:27:49,551 | INFO     | all payload control threads have been joined
[2025-06-05 06:51:36] 2025-06-05 02:27:49,569 | INFO     | [data] control thread has finished
[2025-06-05 06:51:36] 2025-06-05 02:27:49,752 | INFO     | [payload] failed_post thread has finished
[2025-06-05 06:51:36] 2025-06-05 02:27:49,776 | INFO     | all job control threads have been joined
[2025-06-05 06:51:36] 2025-06-05 02:27:49,856 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 06:51:36] 2025-06-05 02:27:49,974 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 06:51:36] 2025-06-05 02:27:50,002 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 06:51:36] 2025-06-05 02:27:50,436 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:51:36] 2025-06-05 02:27:50,558 | INFO     | [payload] control thread has finished
[2025-06-05 06:51:36] 2025-06-05 02:27:50,707 | INFO     | [job] validate thread has finished
[2025-06-05 06:51:36] 2025-06-05 02:27:50,723 | INFO     | [data] copytool_in thread has finished
[2025-06-05 06:51:36] 2025-06-05 02:27:50,783 | INFO     | [job] control thread has finished
[2025-06-05 06:51:36] 2025-06-05 02:27:50,791 | INFO     | [data] copytool_out thread has finished
[2025-06-05 06:51:36] 2025-06-05 02:27:50,841 | INFO     | [payload] validate_post thread has finished
[2025-06-05 06:51:36] 2025-06-05 02:27:51,442 | INFO     | [job] queue monitor thread has finished
[2025-06-05 06:51:36] 2025-06-05 02:27:52,279 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 06:51:36] 2025-06-05 02:27:53,229 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139755311417152)>', '<ExcThread(monitor, started 139754880366336)>']
[2025-06-05 06:51:36] 2025-06-05 02:27:53,306 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 06:51:36] 2025-06-05 02:27:53,307 | INFO     | [monitor] control thread has ended
[2025-06-05 06:51:36] 2025-06-05 02:27:58,254 | INFO     | all workflow threads have been joined
[2025-06-05 06:51:36] 2025-06-05 02:27:58,255 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 06:51:36] 2025-06-05 02:27:58,255 | INFO     | traces error code: 0
[2025-06-05 06:51:36] 2025-06-05 02:27:58,255 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 06:51:36] 2025-06-05 02:27:58,587 [wrapper] ==== pilot stdout END ====
[2025-06-05 06:51:36] 2025-06-05 02:27:58,663 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 06:51:36] 2025-06-05 02:27:58,721 [wrapper] pilotpid: 3048
[2025-06-05 06:51:36] 2025-06-05 02:27:58,761 [wrapper] Pilot exit status: 0
[2025-06-05 06:51:36] 2025-06-05 02:27:58,886 [wrapper] pandaids: 6678286409
[2025-06-05 06:51:36] 2025-06-05 02:27:59,754 [wrapper] cleanup supervisor_pilot 15224 3049
[2025-06-05 06:51:36] 2025-06-05 02:27:59,828 [wrapper] Test setup, not cleaning
[2025-06-05 06:51:36] 2025-06-05 02:27:59,923 [wrapper] apfmon messages muted
[2025-06-05 06:51:36] 2025-06-05 02:28:00,025 [wrapper] ==== wrapper stdout END ====
[2025-06-05 06:51:36] 2025-06-05 02:28:00,110 [wrapper] ==== wrapper stderr END ====
[2025-06-05 06:51:36]  *** Error codes and diagnostics ***
[2025-06-05 06:51:36]     "exeErrorCode": 0,
[2025-06-05 06:51:36]     "exeErrorDiag": "",
[2025-06-05 06:51:36]     "pilotErrorCode": 0,
[2025-06-05 06:51:36]     "pilotErrorDiag": "",
[2025-06-05 06:51:36]  *** Listing of results directory ***
[2025-06-05 06:51:36] total 392572
[2025-06-05 06:51:36] -rw-r--r--. 1 boinc boinc    495897 Jun  4 04:52 pilot3.tar.gz
[2025-06-05 06:51:36] -rw-r--r--. 1 boinc boinc      5111 Jun  4 05:13 queuedata.json
[2025-06-05 06:51:36] -rwx------. 1 boinc boinc     37140 Jun  4 05:13 runpilot2-wrapper.sh
[2025-06-05 06:51:36] -rw-r--r--. 1 boinc boinc       100 Jun  5 00:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 06:51:36] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 00:44 run_atlas
[2025-06-05 06:51:36] -rw-r--r--. 1 boinc boinc       105 Jun  5 00:44 job.xml
[2025-06-05 06:51:36] -rw-r--r--. 2 boinc boinc 216580658 Jun  5 00:44 EVNT.45006593._002057.pool.root.1
[2025-06-05 06:51:36] -rw-r--r--. 2 boinc boinc    508882 Jun  5 00:44 input.tar.gz
[2025-06-05 06:51:36] -rw-r--r--. 1 boinc boinc      6392 Jun  5 00:44 init_data.xml
[2025-06-05 06:51:36] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:44 start_atlas.sh
[2025-06-05 06:51:36] drwxrwx--x. 2 boinc boinc        68 Jun  5 00:44 shared
[2025-06-05 06:51:36] -rw-r--r--. 1 boinc boinc         0 Jun  5 00:44 boinc_lockfile
[2025-06-05 06:51:36] -rw-r--r--. 1 boinc boinc      2525 Jun  5 00:45 pandaJob.out
[2025-06-05 06:51:36] -rw-------. 1 boinc boinc    987032 Jun  5 00:45 agis_schedconf.cvmfs.json
[2025-06-05 06:51:36] drwx------. 4 boinc boinc      4096 Jun  5 00:45 pilot3
[2025-06-05 06:51:36] -rw-------. 1 boinc boinc 178538777 Jun  5 04:24 HITS.45006595._051337.pool.root.1
[2025-06-05 06:51:36] -rw-r--r--. 1 boinc boinc       531 Jun  5 04:25 boinc_task_state.xml
[2025-06-05 06:51:36] -rw-------. 1 boinc boinc      1016 Jun  5 04:26 memory_monitor_summary.json
[2025-06-05 06:51:36] -rw-------. 1 boinc boinc   1598969 Jun  5 04:26 agis_ddmendpoints.agis.ALL.json
[2025-06-05 06:51:36] -rw-------. 1 boinc boinc    372658 Jun  5 04:26 log.45006595._051337.job.log.tgz.1
[2025-06-05 06:51:36] -rw-------. 1 boinc boinc      7697 Jun  5 04:27 heartbeat.json
[2025-06-05 06:51:36] -rw-------. 1 boinc boinc        95 Jun  5 04:27 pilot_heartbeat.json
[2025-06-05 06:51:36] -rw-------. 1 boinc boinc      4540 Jun  5 04:27 pilotlog.txt
[2025-06-05 06:51:36] -rw-------. 1 boinc boinc   1155988 Jun  5 04:28 log.45006595._051337.job.log.1
[2025-06-05 06:51:36] -rw-------. 1 boinc boinc       357 Jun  5 04:28 output.list
[2025-06-05 06:51:36] -rw-r--r--. 1 boinc boinc       620 Jun  5 04:28 runtime_log
[2025-06-05 06:51:36] -rw-------. 1 boinc boinc   1546240 Jun  5 04:28 result.tar.gz
[2025-06-05 06:51:36] -rw-r--r--. 1 boinc boinc      8673 Jun  5 04:28 runtime_log.err
[2025-06-05 06:51:36] -rw-------. 1 boinc boinc       657 Jun  5 04:28 cHKMDmWktg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmzaaKDmiquntn.diag
[2025-06-05 06:51:36] -rw-r--r--. 1 boinc boinc      8192 Jun  5 06:51 boinc_mmap_file
[2025-06-05 06:51:36] -rw-r--r--. 1 boinc boinc        28 Jun  5 06:51 wrapper_checkpoint.txt
[2025-06-05 06:51:36] -rw-r--r--. 1 boinc boinc     20511 Jun  5 06:51 stderr.txt
[2025-06-05 06:51:36] HITS file was successfully produced:
[2025-06-05 06:51:36] -rw-------. 1 boinc boinc 178538777 Jun  5 04:24 shared/HITS.pool.root.1
[2025-06-05 06:51:36]  *** Contents of shared directory: ***
[2025-06-05 06:51:36] total 387892
[2025-06-05 06:51:36] -rw-r--r--. 2 boinc boinc 216580658 Jun  5 00:44 ATLAS.root_0
[2025-06-05 06:51:36] -rw-r--r--. 2 boinc boinc    508882 Jun  5 00:44 input.tar.gz
[2025-06-05 06:51:36] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:44 start_atlas.sh
[2025-06-05 06:51:36] -rw-------. 1 boinc boinc 178538777 Jun  5 04:24 HITS.pool.root.1
[2025-06-05 06:51:36] -rw-------. 1 boinc boinc   1546240 Jun  5 04:28 result.tar.gz
06:51:38 (31712): run_atlas exited; CPU time 50316.939510
06:51:38 (31712): called boinc_finish(0)

</stderr_txt>
]]>

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