Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:21:14 (25097): wrapper (7.7.26015): starting
19:21:14 (25097): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 19:21:14] Arguments: --nthreads 8
[2025-06-04 19:21:14] Threads: 8
[2025-06-04 19:21:14] Checking for CVMFS
[2025-06-04 19:21:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:21:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:21:16] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:21:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:21:17] 2.11.2.0 8404 33667 97452 146789 2 158 19167692 25165825 3585 130560 0 17588388 99.835 19255928 4309 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 19:21:17] CVMFS is ok
[2025-06-04 19:21:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:21:17] Checking for apptainer binary...
[2025-06-04 19:21:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:21:17] Running /usr/bin/apptainer --version
[2025-06-04 19:21:17] apptainer version 1.3.2-1.el7
[2025-06-04 19:21:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:21:29] cg-vwn309.simple-grid.lan
[2025-06-04 19:21:29] apptainer works
[2025-06-04 19:21:29] Set ATHENA_PROC_NUMBER=8
[2025-06-04 19:21:29] Set ATHENA_CORE_NUMBER=8
[2025-06-04 19:21:29] Starting ATLAS job with PandaID=6678285876
[2025-06-04 19:21:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 23:21:24]  *** The last 200 lines of the pilot log: ***
[2025-06-04 23:21:25] 2025-06-04 21:09:36,747 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6678285876/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 23:21:25] 2025-06-04 21:09:36,748 | INFO     | extracted standard info from prmon json
[2025-06-04 23:21:25] 2025-06-04 21:09:36,748 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 23:21:25] 2025-06-04 21:09:36,748 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 23:21:25] 2025-06-04 21:09:36,748 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 23:21:25] 2025-06-04 21:09:36,748 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 23:21:25] 2025-06-04 21:09:36,754 | INFO     | fitting pss+swap vs Time
[2025-06-04 23:21:25] 2025-06-04 21:09:36,755 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 23:21:25] 2025-06-04 21:09:36,757 | INFO     | sum of deviations: -26940172766.50001
[2025-06-04 23:21:25] 2025-06-04 21:09:36,757 | INFO     | mean x: 1749064516.5
[2025-06-04 23:21:25] 2025-06-04 21:09:36,763 | INFO     | mean y: 2498314.8693693695
[2025-06-04 23:21:25] 2025-06-04 21:09:36,764 | INFO     | -- intersect: 13891712354.089535
[2025-06-04 23:21:25] 2025-06-04 21:09:36,764 | INFO     | intersect: 13891712354.089535
[2025-06-04 23:21:25] 2025-06-04 21:09:36,764 | INFO     | chi2: 2.6585572181821853
[2025-06-04 23:21:25] 2025-06-04 21:09:36,765 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 23:21:25] 2025-06-04 21:09:36,767 | INFO     | sum of deviations: -11742721064.000006
[2025-06-04 23:21:25] 2025-06-04 21:09:36,767 | INFO     | mean x: 1749064364.0
[2025-06-04 23:21:25] 2025-06-04 21:09:36,767 | INFO     | mean y: 2508474.815668203
[2025-06-04 23:21:25] 2025-06-04 21:09:36,767 | INFO     | -- intersect: 6484763807.038519
[2025-06-04 23:21:25] 2025-06-04 21:09:36,767 | INFO     | intersect: 6484763807.038519
[2025-06-04 23:21:25] 2025-06-04 21:09:36,767 | INFO     | chi2: 1.8946092082107575
[2025-06-04 23:21:25] 2025-06-04 21:09:36,768 | INFO     | current chi2=1.8946092082107575 (change=28.73543607587971 %)
[2025-06-04 23:21:25] 2025-06-04 21:09:36,768 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 23:21:25] 2025-06-04 21:09:36,770 | INFO     | sum of deviations: -11426737160.000002
[2025-06-04 23:21:25] 2025-06-04 21:09:36,770 | INFO     | mean x: 1749064211.5
[2025-06-04 23:21:25] 2025-06-04 21:09:36,770 | INFO     | mean y: 2508700.0188679243
[2025-06-04 23:21:25] 2025-06-04 21:09:36,770 | INFO     | -- intersect: 6767257085.746532
[2025-06-04 23:21:25] 2025-06-04 21:09:36,771 | INFO     | intersect: 6767257085.746532
[2025-06-04 23:21:25] 2025-06-04 21:09:36,771 | INFO     | chi2: 1.8934557055175534
[2025-06-04 23:21:25] 2025-06-04 21:09:36,771 | INFO     | current chi2=1.8934557055175534 (change=0.060883410056551214 %)
[2025-06-04 23:21:25] 2025-06-04 21:09:36,771 | INFO     | right removable region: 211
[2025-06-04 23:21:25] 2025-06-04 21:09:36,772 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 23:21:25] 2025-06-04 21:09:36,773 | INFO     | sum of deviations: -65329972210.99999
[2025-06-04 23:21:25] 2025-06-04 21:09:36,774 | INFO     | mean x: 1749064669.0
[2025-06-04 23:21:25] 2025-06-04 21:09:36,774 | INFO     | mean y: 2524213.4976958525
[2025-06-04 23:21:25] 2025-06-04 21:09:36,774 | INFO     | -- intersect: 36066195679.21811
[2025-06-04 23:21:25] 2025-06-04 21:09:36,774 | INFO     | intersect: 36066195679.21811
[2025-06-04 23:21:25] 2025-06-04 21:09:36,775 | INFO     | chi2: 1.0088701150909558
[2025-06-04 23:21:25] 2025-06-04 21:09:36,775 | INFO     | current chi2=1.0088701150909558 (change=62.05196908341206 %)
[2025-06-04 23:21:25] 2025-06-04 21:09:36,775 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 23:21:25] 2025-06-04 21:09:36,777 | INFO     | sum of deviations: -61726727587.00001
[2025-06-04 23:21:25] 2025-06-04 21:09:36,777 | INFO     | mean x: 1749064821.5
[2025-06-04 23:21:25] 2025-06-04 21:09:36,777 | INFO     | mean y: 2521616.169811321
[2025-06-04 23:21:25] 2025-06-04 21:09:36,777 | INFO     | -- intersect: 36545405256.78587
[2025-06-04 23:21:25] 2025-06-04 21:09:36,778 | INFO     | intersect: 36545405256.78587
[2025-06-04 23:21:25] 2025-06-04 21:09:36,778 | INFO     | chi2: 0.9998375043194798
[2025-06-04 23:21:25] 2025-06-04 21:09:36,778 | INFO     | current chi2=0.9998375043194798 (change=0.8953194902261175 %)
[2025-06-04 23:21:25] 2025-06-04 21:09:36,779 | INFO     | left removable region: 20
[2025-06-04 23:21:25] 2025-06-04 21:09:36,779 | INFO     | sum of square deviations: 2160561440.0
[2025-06-04 23:21:25] 2025-06-04 21:09:36,780 | INFO     | sum of deviations: -32394608210.999996
[2025-06-04 23:21:25] 2025-06-04 21:09:36,781 | INFO     | mean x: 1749064791.0
[2025-06-04 23:21:25] 2025-06-04 21:09:36,781 | INFO     | mean y: 2522923.005235602
[2025-06-04 23:21:25] 2025-06-04 21:09:36,781 | INFO     | -- intersect: 26227312272.24938
[2025-06-04 23:21:25] 2025-06-04 21:09:36,781 | INFO     | intersect: 26227312272.24938
[2025-06-04 23:21:25] 2025-06-04 21:09:36,781 | INFO     | chi2: 0.1849150238664925
[2025-06-04 23:21:25] 2025-06-04 21:09:36,782 | INFO     | -- intersect: 26227312272.24938
[2025-06-04 23:21:25] 2025-06-04 21:09:36,782 | INFO     | current memory leak: -14.99 B/s (using 191 data points, chi2=0.18)
[2025-06-04 23:21:25] 2025-06-04 21:09:36,783 | INFO     | ..............................
[2025-06-04 23:21:25] 2025-06-04 21:09:36,783 | INFO     | . Timing measurements:
[2025-06-04 23:21:25] 2025-06-04 21:09:36,783 | INFO     | . get job = 0 s
[2025-06-04 23:21:25] 2025-06-04 21:09:36,783 | INFO     | . initial setup = 2 s
[2025-06-04 23:21:25] 2025-06-04 21:09:36,783 | INFO     | . payload setup = 14 s
[2025-06-04 23:21:25] 2025-06-04 21:09:36,783 | INFO     | . stage-in = 0 s
[2025-06-04 23:21:25] 2025-06-04 21:09:36,783 | INFO     | . payload execution = 13524 s
[2025-06-04 23:21:25] 2025-06-04 21:09:36,783 | INFO     | . stage-out = 4 s
[2025-06-04 23:21:25] 2025-06-04 21:09:36,783 | INFO     | . log creation = 1 s
[2025-06-04 23:21:25] 2025-06-04 21:09:36,784 | INFO     | ..............................
[2025-06-04 23:21:25] 2025-06-04 21:09:37,178 | INFO     | 
[2025-06-04 23:21:25] 2025-06-04 21:09:37,179 | INFO     | job summary report
[2025-06-04 23:21:25] 2025-06-04 21:09:37,179 | INFO     | --------------------------------------------------
[2025-06-04 23:21:25] 2025-06-04 21:09:37,179 | INFO     | PanDA job id: 6678285876
[2025-06-04 23:21:25] 2025-06-04 21:09:37,179 | INFO     | task id: 45006595
[2025-06-04 23:21:25] 2025-06-04 21:09:37,179 | INFO     | errors: (none)
[2025-06-04 23:21:25] 2025-06-04 21:09:37,179 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 23:21:25] 2025-06-04 21:09:37,179 | INFO     | pilot state: finished 
[2025-06-04 23:21:25] 2025-06-04 21:09:37,179 | INFO     | transexitcode: 0
[2025-06-04 23:21:25] 2025-06-04 21:09:37,179 | INFO     | exeerrorcode: 0
[2025-06-04 23:21:25] 2025-06-04 21:09:37,180 | INFO     | exeerrordiag: 
[2025-06-04 23:21:25] 2025-06-04 21:09:37,180 | INFO     | exitcode: 0
[2025-06-04 23:21:25] 2025-06-04 21:09:37,180 | INFO     | exitmsg: OK
[2025-06-04 23:21:25] 2025-06-04 21:09:37,180 | INFO     | cpuconsumptiontime: 51360 s
[2025-06-04 23:21:25] 2025-06-04 21:09:37,180 | INFO     | nevents: 400
[2025-06-04 23:21:25] 2025-06-04 21:09:37,180 | INFO     | neventsw: 0
[2025-06-04 23:21:25] 2025-06-04 21:09:37,180 | INFO     | pid: 6902
[2025-06-04 23:21:25] 2025-06-04 21:09:37,180 | INFO     | pgrp: 6902
[2025-06-04 23:21:25] 2025-06-04 21:09:37,180 | INFO     | corecount: 8
[2025-06-04 23:21:25] 2025-06-04 21:09:37,181 | INFO     | event service: False
[2025-06-04 23:21:25] 2025-06-04 21:09:37,181 | INFO     | sizes: {0: 2397116, 1: 2397371, 2: 2397371, 12: 2397633, 13543: 2427366, 13549: 2436309, 13550: 2436493, 13643: 2436493}
[2025-06-04 23:21:25] 2025-06-04 21:09:37,181 | INFO     | --------------------------------------------------
[2025-06-04 23:21:25] 2025-06-04 21:09:37,181 | INFO     | 
[2025-06-04 23:21:25] 2025-06-04 21:09:37,181 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-06-04 23:21:25] 2025-06-04 21:09:37,699 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,700 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,700 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,700 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,700 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,700 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,700 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,700 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,700 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,700 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,701 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,701 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,701 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,701 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,701 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,701 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,701 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,701 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 23:21:25] 2025-06-04 21:09:37,701 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,702 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 23:21:25] 2025-06-04 21:09:37,702 | INFO     | job 6678285876 has completed (purged errors)
[2025-06-04 23:21:25] 2025-06-04 21:09:37,702 | INFO     | overall cleanup function is called
[2025-06-04 23:21:25] 2025-06-04 21:09:38,710 | INFO     | --- collectZombieJob: --- 10, [6902]
[2025-06-04 23:21:25] 2025-06-04 21:09:38,711 | INFO     | zombie collector waiting for pid 6902
[2025-06-04 23:21:25] 2025-06-04 21:09:38,711 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 23:21:25] 2025-06-04 21:09:38,711 | INFO     | collected zombie processes
[2025-06-04 23:21:25] 2025-06-04 21:09:38,711 | INFO     | will attempt to kill all subprocesses of pid=6902
[2025-06-04 23:21:25] 2025-06-04 21:09:38,826 | INFO     | process IDs to be killed: [6902] (in reverse order)
[2025-06-04 23:21:25] 2025-06-04 21:09:39,484 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 23:21:25] 2025-06-04 21:09:39,484 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 23:21:25] 2025-06-04 21:09:39,488 | INFO     | did not find any defunct processes belonging to 6902
[2025-06-04 23:21:25] 2025-06-04 21:09:39,491 | INFO     | did not find any defunct processes belonging to 6902
[2025-06-04 23:21:25] 2025-06-04 21:09:39,492 | INFO     | ready for new job
[2025-06-04 23:21:25] 2025-06-04 21:09:39,492 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 23:21:25] 2025-06-04 21:09:39,494 | INFO     | **************************************
[2025-06-04 23:21:25] 2025-06-04 21:09:39,494 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 23:21:25] 2025-06-04 21:09:39,494 | INFO     | **************************************
[2025-06-04 23:21:25] 2025-06-04 21:09:39,495 | INFO     | 
[2025-06-04 23:21:25] 2025-06-04 21:09:39,495 | INFO     | pilot is running in a VM
[2025-06-04 23:21:25] 2025-06-04 21:09:39,495 | INFO     | architecture information:
[2025-06-04 23:21:25] 2025-06-04 21:09:39,510 | INFO     | executing command: cat /etc/os-release
[2025-06-04 23:21:25] 2025-06-04 21:09:39,836 | INFO     | cat /etc/os-release:
[2025-06-04 23:21:25] NAME="CentOS Linux"
[2025-06-04 23:21:25] VERSION="7 (Core)"
[2025-06-04 23:21:25] ID="centos"
[2025-06-04 23:21:25] ID_LIKE="rhel fedora"
[2025-06-04 23:21:25] VERSION_ID="7"
[2025-06-04 23:21:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 23:21:25] ANSI_COLOR="0;31"
[2025-06-04 23:21:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 23:21:25] HOME_URL="https://www.centos.org/"
[2025-06-04 23:21:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 23:21:25] 
[2025-06-04 23:21:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 23:21:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 23:21:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 23:21:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 23:21:25] 
[2025-06-04 23:21:25] 2025-06-04 21:09:39,837 | INFO     | **************************************
[2025-06-04 23:21:25] 2025-06-04 21:09:40,341 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-06-04 23:21:25] 2025-06-04 21:09:40,531 | INFO     | sufficient remaining disk space (497458085888 B)
[2025-06-04 23:21:25] 2025-06-04 21:09:40,532 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 23:21:25] 2025-06-04 21:09:40,532 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 23:21:25] 2025-06-04 21:09:40,532 | INFO     | update_server=False
[2025-06-04 23:21:25] 2025-06-04 21:09:40,532 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 23:21:25] 2025-06-04 21:09:40,533 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:21:25] 2025-06-04 21:09:40,534 | INFO     | aborting loop
[2025-06-04 23:21:25] 2025-06-04 21:09:40,758 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 23:21:25] 2025-06-04 21:09:40,759 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 23:21:25] 2025-06-04 21:09:40,759 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 23:21:25] 2025-06-04 21:09:40,813 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 23:21:25] 2025-06-04 21:09:40,991 | INFO     | all data control threads have been joined
[2025-06-04 23:21:25] 2025-06-04 21:09:41,179 | INFO     | all job control threads have been joined
[2025-06-04 23:21:25] 2025-06-04 21:09:41,538 | INFO     | [job] retrieve thread has finished
[2025-06-04 23:21:25] 2025-06-04 21:09:41,543 | INFO     | [job] job monitor thread has finished
[2025-06-04 23:21:25] 2025-06-04 21:09:41,729 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 23:21:25] 2025-06-04 21:09:41,859 | INFO     | [payload] validate_post thread has finished
[2025-06-04 23:21:25] 2025-06-04 21:09:41,969 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:21:25] 2025-06-04 21:09:41,997 | INFO     | [data] control thread has finished
[2025-06-04 23:21:25] 2025-06-04 21:09:42,042 | INFO     | all payload control threads have been joined
[2025-06-04 23:21:25] 2025-06-04 21:09:42,185 | INFO     | [job] control thread has finished
[2025-06-04 23:21:25] 2025-06-04 21:09:42,346 | INFO     | [payload] failed_post thread has finished
[2025-06-04 23:21:25] 2025-06-04 21:09:42,370 | INFO     | [job] validate thread has finished
[2025-06-04 23:21:25] 2025-06-04 21:09:42,644 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 23:21:25] 2025-06-04 21:09:42,659 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 23:21:25] 2025-06-04 21:09:42,729 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 23:21:25] 2025-06-04 21:09:42,820 | INFO     | [data] copytool_out thread has finished
[2025-06-04 23:21:25] 2025-06-04 21:09:42,943 | INFO     | [data] copytool_in thread has finished
[2025-06-04 23:21:25] 2025-06-04 21:09:42,975 | INFO     | [job] queue monitor thread has finished
[2025-06-04 23:21:25] 2025-06-04 21:09:43,048 | INFO     | [payload] control thread has finished
[2025-06-04 23:21:25] 2025-06-04 21:09:43,860 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 23:21:25] 2025-06-04 21:09:47,869 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 23:21:25] 2025-06-04 21:09:48,173 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139804627404608)>', '<ExcThread(monitor, started 139804062770944)>']
[2025-06-04 23:21:25] 2025-06-04 21:09:48,806 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 23:21:25] 2025-06-04 21:09:48,807 | INFO     | [monitor] control thread has ended
[2025-06-04 23:21:25] 2025-06-04 21:09:53,199 | INFO     | all workflow threads have been joined
[2025-06-04 23:21:25] 2025-06-04 21:09:53,200 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 23:21:25] 2025-06-04 21:09:53,200 | INFO     | traces error code: 0
[2025-06-04 23:21:25] 2025-06-04 21:09:53,200 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 23:21:25] 2025-06-04 21:09:53,543 [wrapper] ==== pilot stdout END ====
[2025-06-04 23:21:25] 2025-06-04 21:09:53,629 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 23:21:25] 2025-06-04 21:09:53,679 [wrapper] pilotpid: 28780
[2025-06-04 23:21:25] 2025-06-04 21:09:53,768 [wrapper] Pilot exit status: 0
[2025-06-04 23:21:25] 2025-06-04 21:09:54,109 [wrapper] pandaids: 6678285876
[2025-06-04 23:21:25] 2025-06-04 21:09:54,778 [wrapper] cleanup supervisor_pilot  7731 28781
[2025-06-04 23:21:25] 2025-06-04 21:09:54,818 [wrapper] Test setup, not cleaning
[2025-06-04 23:21:25] 2025-06-04 21:09:54,905 [wrapper] apfmon messages muted
[2025-06-04 23:21:25] 2025-06-04 21:09:54,945 [wrapper] ==== wrapper stdout END ====
[2025-06-04 23:21:25] 2025-06-04 21:09:55,044 [wrapper] ==== wrapper stderr END ====
[2025-06-04 23:21:25]  *** Error codes and diagnostics ***
[2025-06-04 23:21:25]     "exeErrorCode": 0,
[2025-06-04 23:21:25]     "exeErrorDiag": "",
[2025-06-04 23:21:25]     "pilotErrorCode": 0,
[2025-06-04 23:21:25]     "pilotErrorDiag": "",
[2025-06-04 23:21:25]  *** Listing of results directory ***
[2025-06-04 23:21:25] total 392568
[2025-06-04 23:21:25] -rw-r--r--. 1 boinc boinc    495897 Jun  4 04:52 pilot3.tar.gz
[2025-06-04 23:21:25] -rwx------. 1 boinc boinc     37140 Jun  4 04:59 runpilot2-wrapper.sh
[2025-06-04 23:21:25] -rw-r--r--. 1 boinc boinc      5111 Jun  4 04:59 queuedata.json
[2025-06-04 23:21:25] -rw-r--r--. 1 boinc boinc       100 Jun  4 19:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 23:21:25] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 19:21 run_atlas
[2025-06-04 23:21:25] -rw-r--r--. 1 boinc boinc       105 Jun  4 19:21 job.xml
[2025-06-04 23:21:25] -rw-r--r--. 1 boinc boinc      6392 Jun  4 19:21 init_data.xml
[2025-06-04 23:21:25] -rw-r--r--. 2 boinc boinc 215487174 Jun  4 19:21 EVNT.45006593._002042.pool.root.1
[2025-06-04 23:21:25] -rw-r--r--. 2 boinc boinc     15093 Jun  4 19:21 start_atlas.sh
[2025-06-04 23:21:25] drwxrwx--x. 2 boinc boinc        68 Jun  4 19:21 shared
[2025-06-04 23:21:25] -rw-r--r--. 2 boinc boinc    508878 Jun  4 19:21 input.tar.gz
[2025-06-04 23:21:25] -rw-r--r--. 1 boinc boinc         0 Jun  4 19:21 boinc_lockfile
[2025-06-04 23:21:25] -rw-r--r--. 1 boinc boinc      2525 Jun  4 19:21 pandaJob.out
[2025-06-04 23:21:25] -rw-------. 1 boinc boinc    990984 Jun  4 19:21 agis_schedconf.cvmfs.json
[2025-06-04 23:21:25] drwx------. 4 boinc boinc      4096 Jun  4 19:21 pilot3
[2025-06-04 23:21:25] -rw-------. 1 boinc boinc 179538504 Jun  4 23:06 HITS.45006595._050970.pool.root.1
[2025-06-04 23:21:25] -rw-r--r--. 1 boinc boinc       531 Jun  4 23:07 boinc_task_state.xml
[2025-06-04 23:21:25] -rw-------. 1 boinc boinc      1018 Jun  4 23:07 memory_monitor_summary.json
[2025-06-04 23:21:25] -rw-------. 1 boinc boinc   1598969 Jun  4 23:07 agis_ddmendpoints.agis.ALL.json
[2025-06-04 23:21:25] -rw-------. 1 boinc boinc    387296 Jun  4 23:08 log.45006595._050970.job.log.tgz.1
[2025-06-04 23:21:25] -rw-------. 1 boinc boinc        95 Jun  4 23:09 pilot_heartbeat.json
[2025-06-04 23:21:25] -rw-------. 1 boinc boinc      7689 Jun  4 23:09 heartbeat.json
[2025-06-04 23:21:25] -rw-------. 1 boinc boinc      4417 Jun  4 23:09 pilotlog.txt
[2025-06-04 23:21:25] -rw-------. 1 boinc boinc   1185603 Jun  4 23:09 log.45006595._050970.job.log.1
[2025-06-04 23:21:25] -rw-------. 1 boinc boinc       357 Jun  4 23:09 output.list
[2025-06-04 23:21:25] -rw-r--r--. 1 boinc boinc       620 Jun  4 23:09 runtime_log
[2025-06-04 23:21:25] -rw-------. 1 boinc boinc   1587200 Jun  4 23:09 result.tar.gz
[2025-06-04 23:21:25] -rw-r--r--. 1 boinc boinc      8673 Jun  4 23:09 runtime_log.err
[2025-06-04 23:21:25] -rw-------. 1 boinc boinc       657 Jun  4 23:09 oS3LDmQWtg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6xmKDmuxM9Yn.diag
[2025-06-04 23:21:25] -rw-r--r--. 1 boinc boinc      8192 Jun  4 23:21 boinc_mmap_file
[2025-06-04 23:21:25] -rw-r--r--. 1 boinc boinc        28 Jun  4 23:21 wrapper_checkpoint.txt
[2025-06-04 23:21:25] -rw-r--r--. 1 boinc boinc     20491 Jun  4 23:21 stderr.txt
[2025-06-04 23:21:25] HITS file was successfully produced:
[2025-06-04 23:21:25] -rw-------. 1 boinc boinc 179538504 Jun  4 23:06 shared/HITS.pool.root.1
[2025-06-04 23:21:25]  *** Contents of shared directory: ***
[2025-06-04 23:21:25] total 387840
[2025-06-04 23:21:25] -rw-r--r--. 2 boinc boinc 215487174 Jun  4 19:21 ATLAS.root_0
[2025-06-04 23:21:25] -rw-r--r--. 2 boinc boinc     15093 Jun  4 19:21 start_atlas.sh
[2025-06-04 23:21:25] -rw-r--r--. 2 boinc boinc    508878 Jun  4 19:21 input.tar.gz
[2025-06-04 23:21:25] -rw-------. 1 boinc boinc 179538504 Jun  4 23:06 HITS.pool.root.1
[2025-06-04 23:21:25] -rw-------. 1 boinc boinc   1587200 Jun  4 23:09 result.tar.gz
23:21:26 (25097): run_atlas exited; CPU time 51537.774594
23:21:26 (25097): called boinc_finish(0)

</stderr_txt>
]]>

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