Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-05 12:10:23 (147540): Detected: vboxwrapper 26206
2025-06-05 12:10:23 (147540): Detected: BOINC client v8.0.2
2025-06-05 12:10:23 (147540): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-06-05 12:10:24 (147540): Successfully copied 'init_data.xml' to the shared directory.
2025-06-05 12:10:24 (147540): Create VM. (boinc_428e763ae2bc78c7, slot#3)
2025-06-05 12:10:25 (147540): Setting Memory Size for VM. (4400MB)
2025-06-05 12:10:25 (147540): Setting CPU Count for VM. (4)
2025-06-05 12:10:25 (147540): Setting Chipset Options for VM.
2025-06-05 12:10:26 (147540): Setting Graphics Controller Options for VM.
2025-06-05 12:10:26 (147540): Setting Boot Options for VM.
2025-06-05 12:10:26 (147540): Setting Network Configuration for NAT.
2025-06-05 12:10:27 (147540): Enabling VM Network Access.
2025-06-05 12:10:27 (147540): Disabling USB Support for VM.
2025-06-05 12:10:27 (147540): Disabling COM Port Support for VM.
2025-06-05 12:10:27 (147540): Disabling LPT Port Support for VM.
2025-06-05 12:10:28 (147540): Disabling Audio Support for VM.
2025-06-05 12:10:28 (147540): Disabling Clipboard Support for VM.
2025-06-05 12:10:28 (147540): Disabling Drag and Drop Support for VM.
2025-06-05 12:10:29 (147540): Adding storage controller(s) to VM.
2025-06-05 12:10:29 (147540): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-05 12:10:32 (147540): Adding VirtualBox Guest Additions to VM.
2025-06-05 12:10:32 (147540): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-05 12:10:33 (147540): forwarding host port 51562 to guest port 80
2025-06-05 12:10:33 (147540): Enabling remote desktop for VM.
2025-06-05 12:10:33 (147540): Required extension pack not installed, remote desktop not enabled.
2025-06-05 12:10:33 (147540): Enabling shared directory for VM.
2025-06-05 12:10:34 (147540): Starting VM using VBoxManage interface. (boinc_428e763ae2bc78c7, slot#3)
2025-06-05 12:10:40 (147540): Successfully started VM. (PID = '85488')
2025-06-05 12:10:40 (147540): Reporting VM Process ID to BOINC.
2025-06-05 12:10:40 (147540): Guest Log: BIOS: VirtualBox 7.1.8
2025-06-05 12:10:40 (147540): Guest Log: CPUID EDX: 0x178bfbff
2025-06-05 12:10:40 (147540): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-05 12:10:40 (147540): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-05 12:10:40 (147540): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-05 12:10:40 (147540): Detected: Web Application Enabled (http://localhost:51562)
2025-06-05 12:10:40 (147540): Preference change detected
2025-06-05 12:10:40 (147540): Setting CPU throttle for VM. (100%)
2025-06-05 12:10:40 (147540): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-05 12:10:42 (147540): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-05 12:10:42 (147540): Guest Log: BIOS: Booting from Hard Disk...
2025-06-05 12:10:45 (147540): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-05 12:10:45 (147540): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-05 12:10:45 (147540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-05 12:10:50 (147540): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-05 12:10:50 (147540): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-05 12:10:56 (147540): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-05 12:10:56 (147540): Guest Log: 00:00:00.000255 main     Log opened 2025-06-05T12:10:55.461090000Z
2025-06-05 12:10:56 (147540): Guest Log: 00:00:00.000566 main     OS Product: Linux
2025-06-05 12:10:56 (147540): Guest Log: 00:00:00.000659 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-05 12:10:56 (147540): Guest Log: 00:00:00.000727 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-05 12:10:56 (147540): Guest Log: 00:00:00.000794 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-05 12:10:56 (147540): Guest Log: 00:00:00.000795 main     Process ID: 1312
2025-06-05 12:10:56 (147540): Guest Log: 00:00:00.000797 main     Package type: LINUX_64BITS_GENERIC
2025-06-05 12:10:56 (147540): Guest Log: 00:00:00.002501 main     5.2.32 r132073 started. Verbose level = 0
2025-06-05 12:10:57 (147540): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-05 12:10:57 (147540): Guest Log: [INFO] Mounting shared directory
2025-06-05 12:10:57 (147540): Guest Log: [INFO] Checking for init_data.xml
2025-06-05 12:11:06 (147540): Guest Log: 00:00:10.007423 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 820 731 000ns (GuestNow=1 749 121 866 646 722 000 ns GuestLast=1 749 125 455 467 453 000 ns fSetTimeLastLoop=true )
2025-06-05 12:11:08 (147540): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-05 12:11:08 (147540): Guest Log: [INFO] Detected branch: prod
2025-06-05 12:11:09 (147540): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-05 12:11:09 (147540): Guest Log: Copying input files
2025-06-05 12:11:11 (147540): Guest Log: Copied input files into RunAtlas.
2025-06-05 12:11:11 (147540): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-05 12:11:11 (147540): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-05 12:11:11 (147540): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-05 12:11:11 (147540): Guest Log: Further information can be found at the LHC@home message board.
2025-06-05 12:11:21 (147540): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-05 12:11:21 (147540): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-05 12:11:21 (147540): Guest Log: 2.6.3.0 1608 0 30160 146816 3 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-05 12:11:22 (147540): Guest Log: copied the webapp to /var/www
2025-06-05 12:11:22 (147540): Guest Log: ATHENA_PROC_NUMBER=4
2025-06-05 12:11:22 (147540): Guest Log: ATHENA_CORE_NUMBER=4
2025-06-05 12:11:22 (147540): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-05 12:11:23 (147540): Guest Log:  *** Starting ATLAS job. (PandaID=6678072382 taskID=45006595) ***
2025-06-05 12:17:36 (147540): VM state change detected. (old = 'running', new = 'paused')
2025-06-05 12:17:56 (147540): VM state change detected. (old = 'paused', new = 'running')
2025-06-05 13:51:31 (147540): Status Report: Elapsed Time: '6000.000000'
2025-06-05 13:51:31 (147540): Status Report: CPU Time: '21441.312500'
2025-06-05 14:21:27 (147540): VM state change detected. (old = 'running', new = 'paused')
2025-06-05 15:21:34 (147540): VM state change detected. (old = 'paused', new = 'running')
2025-06-05 15:21:42 (147540): Guest Log: 02:10:22.266507 timesync vgsvcTimeSyncWorker: Radical host time change: 3 616 512 000 000ns (HostNow=1 749 133 301 717 000 000 ns HostLast=1 749 129 685 205 000 000 ns)
2025-06-05 15:21:52 (147540): Guest Log: 02:10:32.274323 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 632 819 034 000ns (GuestNow=1 749 133 311 724 876 000 ns GuestLast=1 749 129 678 905 842 000 ns fSetTimeLastLoop=true )
2025-06-05 15:27:02 (147540): Guest Log:  *** Job finished ***
2025-06-05 15:27:03 (147540): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:26:52,502 | INFO     | [data] copytool_in thread has finished
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:26:53,435 | INFO     | [data] copytool_out thread has finished
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:26:54,191 | INFO     | [data] queue_monitor thread has finished
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:26:56,143 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139888035841856)>', '<ExcThread(monitor, started 139887000934144)>']
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:26:56,255 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:26:56,255 | INFO     | [monitor] control thread has ended
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:27:01,152 | INFO     | all workflow threads have been joined
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:27:01,153 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:27:01,153 | INFO     | traces error code: 0
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:27:01,153 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:27:01,277 [wrapper] ==== pilot stdout END ====
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:27:01,282 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:27:01,288 [wrapper] pilotpid: 5919
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:27:01,296 [wrapper] Pilot exit status: 0
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:27:01,523 [wrapper] pandaids: 6678072382
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:27:01,573 [wrapper] cleanup supervisor_pilot  4421 5920
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:27:01,580 [wrapper] Test setup, not cleaning
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:27:01,593 [wrapper] apfmon messages muted
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:27:01,600 [wrapper] ==== wrapper stdout END ====
2025-06-05 15:27:03 (147540): Guest Log: 2025-06-05 14:27:01,606 [wrapper] ==== wrapper stderr END ====
2025-06-05 15:27:03 (147540): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 15:27:03 (147540): Guest Log:     "exeErrorCode": 0,
2025-06-05 15:27:03 (147540): Guest Log:     "exeErrorDiag": "",
2025-06-05 15:27:03 (147540): Guest Log:     "pilotErrorCode": 0,
2025-06-05 15:27:03 (147540): Guest Log:     "pilotErrorDiag": "",
2025-06-05 15:27:03 (147540): Guest Log:  *** Listing of results directory ***
2025-06-05 15:27:03 (147540): Guest Log: total 176036
2025-06-05 15:27:03 (147540): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  3 20:49 pilot3.tar.gz
2025-06-05 15:27:03 (147540): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  3 21:03 queuedata.json
2025-06-05 15:27:03 (147540): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  3 21:04 runpilot2-wrapper.sh
2025-06-05 15:27:03 (147540): Guest Log: -rwxr-xr-x. 1 atlas atlas      9294 Jun  5 11:11 init_data.xml
2025-06-05 15:27:03 (147540): Guest Log: -rwxr-xr-x. 1 atlas atlas    508887 Jun  5 11:11 input.tar.gz
2025-06-05 15:27:03 (147540): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  5 11:11 start_atlas.sh
2025-06-05 15:27:03 (147540): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  5 11:11 EVNT.45006593._001833.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 15:27:03 (147540): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  5 11:11 pandaJob.out
2025-06-05 15:27:03 (147540): Guest Log: -rw-------. 1 atlas atlas    982836 Jun  5 11:13 agis_schedconf.cvmfs.json
2025-06-05 15:27:03 (147540): Guest Log: drwx------. 4 atlas atlas      4096 Jun  5 11:13 pilot3
2025-06-05 15:27:03 (147540): Guest Log: -rw-------. 1 atlas atlas 174577073 Jun  5 14:26 HITS.45006595._045701.pool.root.1
2025-06-05 15:27:03 (147540): Guest Log: -rw-------. 1 atlas atlas      1032 Jun  5 14:26 memory_monitor_summary.json
2025-06-05 15:27:03 (147540): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  5 14:26 agis_ddmendpoints.agis.ALL.json
2025-06-05 15:27:03 (147540): Guest Log: -rw-------. 1 atlas atlas    273714 Jun  5 14:26 log.45006595._045701.job.log.tgz.1
2025-06-05 15:27:03 (147540): Guest Log: -rw-------. 1 atlas atlas        97 Jun  5 14:26 pilot_heartbeat.json
2025-06-05 15:27:03 (147540): Guest Log: -rw-------. 1 atlas atlas      7691 Jun  5 14:26 heartbeat.json
2025-06-05 15:27:03 (147540): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  5 14:27 pilotlog.txt
2025-06-05 15:27:03 (147540): Guest Log: -rw-------. 1 atlas atlas    688199 Jun  5 14:27 log.45006595._045701.job.log.1
2025-06-05 15:27:03 (147540): Guest Log: -rw-------. 1 atlas atlas       357 Jun  5 14:27 output.list
2025-06-05 15:27:03 (147540): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  5 14:27 runtime_log
2025-06-05 15:27:03 (147540): Guest Log: -rw-------. 1 atlas atlas    983040 Jun  5 14:27 result.tar.gz
2025-06-05 15:27:03 (147540): Guest Log: -rw-------. 1 atlas atlas       649 Jun  5 14:27 zmwMDm2yng7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5CmKDmUJtYym.diag
2025-06-05 15:27:03 (147540): Guest Log: -rw-r--r--. 1 atlas atlas      8565 Jun  5 14:27 runtime_log.err
2025-06-05 15:27:03 (147540): Guest Log: Looking for outputfile HITS.45006595._045701.pool.root.1
2025-06-05 15:27:03 (147540): Guest Log: HITS file was successfully produced
2025-06-05 15:27:03 (147540): Guest Log: -rw-------. 1 atlas atlas 174577073 Jun  5 14:26 /home/atlas/RunAtlas/HITS.45006595._045701.pool.root.1
2025-06-05 15:27:04 (147540): Guest Log: Successfully finished the ATLAS job!
2025-06-05 15:27:04 (147540): Guest Log: Copying the results back to the shared directory!
2025-06-05 15:27:04 (147540): Guest Log:  *** Contents of shared directory: ***
2025-06-05 15:27:04 (147540): Guest Log: total 383044
2025-06-05 15:27:04 (147540): Guest Log: -rwxrwxrwx. 1 root root 216133365 Jun  5 11:10 ATLAS.root_0
2025-06-05 15:27:04 (147540): Guest Log: -rwxrwxrwx. 1 root root 174577073 Jun  5 14:27 HITS.pool.root.1
2025-06-05 15:27:04 (147540): Guest Log: -rwxrwxrwx. 1 root root      9294 Jun  5 11:10 init_data.xml
2025-06-05 15:27:04 (147540): Guest Log: -rwxrwxrwx. 1 root root    508887 Jun  4 07:55 input.tar.gz
2025-06-05 15:27:04 (147540): Guest Log: -rwxrwxrwx. 1 root root    983040 Jun  5 14:27 result.tar.gz
2025-06-05 15:27:04 (147540): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 07:55 start_atlas.sh
2025-06-05 15:27:04 (147540): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 15:27:04 (147540): VM Completion File Detected.
2025-06-05 15:27:04 (147540): Powering off VM.
2025-06-05 15:27:05 (147540): Successfully stopped VM.
2025-06-05 15:27:05 (147540): Deregistering VM. (boinc_428e763ae2bc78c7, slot#3)
2025-06-05 15:27:05 (147540): Removing network bandwidth throttle group from VM.
2025-06-05 15:27:05 (147540): Removing VM from VirtualBox.
15:27:11 (147540): called boinc_finish(0)

</stderr_txt>
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