Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
17:42:03 (812146): wrapper (7.7.26015): starting
17:42:03 (812146): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 17:42:03] Arguments: --nthreads 4
[2025-06-04 17:42:03] Threads: 4
[2025-06-04 17:42:03] Checking for CVMFS
[2025-06-04 17:42:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 17:42:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 17:42:03] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 17:42:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 17:42:03] 2.9.2.0 9870 2084 93468 146786 2 56 30416006 36864000 0 130560 0 2135713 99.994 460830 39943 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 17:42:03] CVMFS is ok
[2025-06-04 17:42:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 17:42:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 17:42:03] Further information can be found at the LHC@home message board.
[2025-06-04 17:42:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 17:42:03] Checking for apptainer binary...
[2025-06-04 17:42:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 17:42:03] Running /usr/bin/apptainer --version
[2025-06-04 17:42:03] apptainer version 1.3.6-6.1
[2025-06-04 17:42:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 17:42:03] atlasA139
[2025-06-04 17:42:03] apptainer works
[2025-06-04 17:42:03] Set ATHENA_PROC_NUMBER=4
[2025-06-04 17:42:03] Set ATHENA_CORE_NUMBER=4
[2025-06-04 17:42:03] Starting ATLAS job with PandaID=6678285540
[2025-06-04 17:42:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:45:58]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:45:58]  guid=b60f0882-aab6-4569-8dfe-12a47b6ca3d0
[2025-06-04 18:45:58]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 18:45:58]  is_altstaged=None
[2025-06-04 18:45:58]  is_tar=False
[2025-06-04 18:45:58]  lfn=log.45006595._050749.job.log.tgz.1
[2025-06-04 18:45:58]  mtime=0
[2025-06-04 18:45:58]  protocol_id=None
[2025-06-04 18:45:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 18:45:58]  replicas=None
[2025-06-04 18:45:58]  scope=mc23_13p6TeV
[2025-06-04 18:45:58]  status=None
[2025-06-04 18:45:58]  status_code=0
[2025-06-04 18:45:58]  storage_token=
[2025-06-04 18:45:58]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6678285540/log.45006595._050749.job.log.tgz.1
[2025-06-04 18:45:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/e8/log.45006595._050749.job.log.tgz.1
[2025-06-04 18:45:58]  workdir=None
[2025-06-04 18:45:58] ]
[2025-06-04 18:45:58] 2025-06-04 16:45:31,457 | INFO     | transferring file log.45006595._050749.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6678285540/log.45006595._050749.job.log.tgz.1 to /local/data/boinc/
[2025-06-04 18:45:58] 2025-06-04 16:45:31,457 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6678285540/log.45006595._050749.job.log.tgz.1 /local/data/boinc/slots/0/log.45006595._0507
[2025-06-04 18:45:58] 2025-06-04 16:45:31,475 | INFO     | adding to output.list: log.45006595._050749.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/e8/log.45006595._050749.job.log.tg
[2025-06-04 18:45:58] 2025-06-04 16:45:31,475 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 18:45:58] 2025-06-04 16:45:31,475 | INFO     | summary of transferred files:
[2025-06-04 18:45:58] 2025-06-04 16:45:31,475 | INFO     |  -- lfn=log.45006595._050749.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 18:45:58] 2025-06-04 16:45:31,475 | INFO     | stage-out finished correctly
[2025-06-04 18:45:58] 2025-06-04 16:45:33,433 | INFO     | monitor loop #293: job 0:6678285540 is in state 'finished'
[2025-06-04 18:45:58] 2025-06-04 16:45:33,433 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 18:45:58] 2025-06-04 16:45:33,510 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 18:45:58] 2025-06-04 16:45:34,205 | INFO     | job 6678285540 has state=finished
[2025-06-04 18:45:58] 2025-06-04 16:45:34,206 | INFO     | preparing for final server update for job 6678285540 in state='finished'
[2025-06-04 18:45:58] 2025-06-04 16:45:34,206 | INFO     | this job has now completed (state=finished)
[2025-06-04 18:45:58] 2025-06-04 16:45:34,206 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 18:45:58] 2025-06-04 16:45:34,206 | INFO     | log transfer has been attempted: DONE
[2025-06-04 18:45:58] 2025-06-04 16:45:34,206 | INFO     | job 6678285540 has finished - writing final server update
[2025-06-04 18:45:58] 2025-06-04 16:45:34,206 | INFO     | total number of processed events: 400 (read)
[2025-06-04 18:45:58] 2025-06-04 16:45:34,207 | INFO     | executing command: lscpu
[2025-06-04 18:45:58] 2025-06-04 16:45:34,228 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 18:45:58] 2025-06-04 16:45:35,937 | INFO     | monitor loop #294: job 0:6678285540 is in state 'finished'
[2025-06-04 18:45:58] 2025-06-04 16:45:35,937 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 18:45:58] 2025-06-04 16:45:36,593 | INFO     | PID=815871 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 18:45:58] 2025-06-04 16:45:37,482 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 18:45:58] 2025-06-04 16:45:37,482 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6678285540/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 18:45:58] 2025-06-04 16:45:37,483 | INFO     | extracted standard info from prmon json
[2025-06-04 18:45:58] 2025-06-04 16:45:37,483 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:45:58] 2025-06-04 16:45:37,483 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:45:58] 2025-06-04 16:45:37,483 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:45:58] 2025-06-04 16:45:37,483 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:45:58] 2025-06-04 16:45:37,484 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:45:58] 2025-06-04 16:45:37,484 | INFO     | sum of square deviations: 51573060.0
[2025-06-04 18:45:58] 2025-06-04 16:45:37,484 | INFO     | sum of deviations: -6369803183.000001
[2025-06-04 18:45:58] 2025-06-04 16:45:37,484 | INFO     | mean x: 1749053706.0
[2025-06-04 18:45:58] 2025-06-04 16:45:37,484 | INFO     | mean y: 2518321.1454545455
[2025-06-04 18:45:58] 2025-06-04 16:45:37,484 | INFO     | -- intersect: 216028634741.55463
[2025-06-04 18:45:58] 2025-06-04 16:45:37,484 | INFO     | intersect: 216028634741.55463
[2025-06-04 18:45:58] 2025-06-04 16:45:37,484 | INFO     | chi2: 0.05210836967924125
[2025-06-04 18:45:58] 2025-06-04 16:45:37,484 | INFO     | -- intersect: 216028634741.55463
[2025-06-04 18:45:58] 2025-06-04 16:45:37,484 | INFO     | current memory leak: -123.51 B/s (using 55 data points, chi2=0.05)
[2025-06-04 18:45:58] 2025-06-04 16:45:37,485 | INFO     | ..............................
[2025-06-04 18:45:58] 2025-06-04 16:45:37,485 | INFO     | . Timing measurements:
[2025-06-04 18:45:58] 2025-06-04 16:45:37,485 | INFO     | . get job = 0 s
[2025-06-04 18:45:58] 2025-06-04 16:45:37,485 | INFO     | . initial setup = 1 s
[2025-06-04 18:45:58] 2025-06-04 16:45:37,485 | INFO     | . payload setup = 4 s
[2025-06-04 18:45:58] 2025-06-04 16:45:37,485 | INFO     | . stage-in = 0 s
[2025-06-04 18:45:58] 2025-06-04 16:45:37,485 | INFO     | . payload execution = 3777 s
[2025-06-04 18:45:58] 2025-06-04 16:45:37,485 | INFO     | . stage-out = 0 s
[2025-06-04 18:45:58] 2025-06-04 16:45:37,485 | INFO     | . log creation = 0 s
[2025-06-04 18:45:58] 2025-06-04 16:45:37,485 | INFO     | ..............................
[2025-06-04 18:45:58] 2025-06-04 16:45:37,525 | INFO     | 
[2025-06-04 18:45:58] 2025-06-04 16:45:37,525 | INFO     | job summary report
[2025-06-04 18:45:58] 2025-06-04 16:45:37,525 | INFO     | --------------------------------------------------
[2025-06-04 18:45:58] 2025-06-04 16:45:37,525 | INFO     | PanDA job id: 6678285540
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | task id: 45006595
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | errors: (none)
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | pilot state: finished 
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | transexitcode: 0
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | exeerrorcode: 0
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | exeerrordiag: 
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | exitcode: 0
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | exitmsg: OK
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | cpuconsumptiontime: 14160 s
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | nevents: 400
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | neventsw: 0
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | pid: 822531
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | pgrp: 822531
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | corecount: 4
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | event service: False
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | sizes: {0: 2397345, 3: 2397551, 11: 2397579, 3785: 2423344, 3786: 2432319, 3788: 2432375, 3792: 2432673}
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | --------------------------------------------------
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | 
[2025-06-04 18:45:58] 2025-06-04 16:45:37,526 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 18:45:58] 2025-06-04 16:45:37,543 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,543 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,543 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,543 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,543 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,543 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,543 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,543 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,543 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,543 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,543 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,543 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,543 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,543 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,544 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,544 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,544 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,544 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:45:58] 2025-06-04 16:45:37,544 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,544 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:45:58] 2025-06-04 16:45:37,544 | INFO     | job 6678285540 has completed (purged errors)
[2025-06-04 18:45:58] 2025-06-04 16:45:37,544 | INFO     | overall cleanup function is called
[2025-06-04 18:45:58] 2025-06-04 16:45:38,550 | INFO     | --- collectZombieJob: --- 10, [822531]
[2025-06-04 18:45:58] 2025-06-04 16:45:38,550 | INFO     | zombie collector waiting for pid 822531
[2025-06-04 18:45:58] 2025-06-04 16:45:38,550 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:45:58] 2025-06-04 16:45:38,550 | INFO     | collected zombie processes
[2025-06-04 18:45:58] 2025-06-04 16:45:38,550 | INFO     | will attempt to kill all subprocesses of pid=822531
[2025-06-04 18:45:58] 2025-06-04 16:45:38,604 | INFO     | process IDs to be killed: [822531] (in reverse order)
[2025-06-04 18:45:58] 2025-06-04 16:45:38,639 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:45:58] 2025-06-04 16:45:38,639 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:45:58] 2025-06-04 16:45:38,641 | INFO     | did not find any defunct processes belonging to 822531
[2025-06-04 18:45:58] 2025-06-04 16:45:38,643 | INFO     | did not find any defunct processes belonging to 822531
[2025-06-04 18:45:58] 2025-06-04 16:45:38,643 | INFO     | ready for new job
[2025-06-04 18:45:58] 2025-06-04 16:45:38,643 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:45:58] 2025-06-04 16:45:38,644 | INFO     | **************************************
[2025-06-04 18:45:58] 2025-06-04 16:45:38,644 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:45:58] 2025-06-04 16:45:38,644 | INFO     | **************************************
[2025-06-04 18:45:58] 2025-06-04 16:45:38,644 | INFO     | 
[2025-06-04 18:45:58] 2025-06-04 16:45:38,644 | INFO     | architecture information:
[2025-06-04 18:45:58] 2025-06-04 16:45:38,644 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:45:58] 2025-06-04 16:45:38,658 | INFO     | cat /etc/os-release:
[2025-06-04 18:45:58] NAME="CentOS Linux"
[2025-06-04 18:45:58] VERSION="7 (Core)"
[2025-06-04 18:45:58] ID="centos"
[2025-06-04 18:45:58] ID_LIKE="rhel fedora"
[2025-06-04 18:45:58] VERSION_ID="7"
[2025-06-04 18:45:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:45:58] ANSI_COLOR="0;31"
[2025-06-04 18:45:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:45:58] HOME_URL="https://www.centos.org/"
[2025-06-04 18:45:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:45:58] 
[2025-06-04 18:45:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:45:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:45:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:45:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:45:58] 
[2025-06-04 18:45:58] 2025-06-04 16:45:38,658 | INFO     | **************************************
[2025-06-04 18:45:58] 2025-06-04 16:45:39,161 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 18:45:58] 2025-06-04 16:45:39,178 | INFO     | sufficient remaining disk space (325698191360 B)
[2025-06-04 18:45:58] 2025-06-04 16:45:39,178 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:45:58] 2025-06-04 16:45:39,178 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:45:58] 2025-06-04 16:45:39,178 | INFO     | update_server=False
[2025-06-04 18:45:58] 2025-06-04 16:45:39,178 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:45:58] 2025-06-04 16:45:39,179 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:45:58] 2025-06-04 16:45:39,179 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 18:45:58] 2025-06-04 16:45:39,179 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:45:58] 2025-06-04 16:45:39,179 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:45:58] 2025-06-04 16:45:39,179 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:45:58] 2025-06-04 16:45:39,446 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:45:58] 2025-06-04 16:45:39,446 | INFO     | aborting loop
[2025-06-04 18:45:58] 2025-06-04 16:45:39,527 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:45:58] 2025-06-04 16:45:39,559 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:45:58] 2025-06-04 16:45:39,987 | INFO     | all data control threads have been joined
[2025-06-04 18:45:58] 2025-06-04 16:45:40,184 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:45:58] 2025-06-04 16:45:40,185 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:45:58] 2025-06-04 16:45:40,288 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:45:58] 2025-06-04 16:45:40,452 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:45:58] 2025-06-04 16:45:40,486 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:45:58] 2025-06-04 16:45:40,545 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:45:58] 2025-06-04 16:45:40,583 | INFO     | all payload control threads have been joined
[2025-06-04 18:45:58] 2025-06-04 16:45:40,742 | INFO     | all job control threads have been joined
[2025-06-04 18:45:58] 2025-06-04 16:45:40,992 | INFO     | [data] control thread has finished
[2025-06-04 18:45:58] 2025-06-04 16:45:41,181 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:45:58] 2025-06-04 16:45:41,226 | INFO     | [job] validate thread has finished
[2025-06-04 18:45:58] 2025-06-04 16:45:41,360 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:45:58] 2025-06-04 16:45:41,434 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:45:58] 2025-06-04 16:45:41,533 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:45:58] 2025-06-04 16:45:41,588 | INFO     | [payload] control thread has finished
[2025-06-04 18:45:58] 2025-06-04 16:45:41,748 | INFO     | [job] control thread has finished
[2025-06-04 18:45:58] 2025-06-04 16:45:43,567 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:45:58] 2025-06-04 16:45:50,084 | INFO     | job.realtimelogging is not enabled
[2025-06-04 18:45:58] 2025-06-04 16:45:51,090 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:45:58] 2025-06-04 16:45:52,855 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140603799222080)>', '<ExcThread(monitor, started 140603295770368)>']
[2025-06-04 18:45:58] 2025-06-04 16:45:53,253 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:45:58] 2025-06-04 16:45:53,253 | INFO     | [monitor] control thread has ended
[2025-06-04 18:45:58] 2025-06-04 16:45:57,881 | INFO     | all workflow threads have been joined
[2025-06-04 18:45:58] 2025-06-04 16:45:57,882 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:45:58] 2025-06-04 16:45:57,882 | INFO     | traces error code: 0
[2025-06-04 18:45:58] 2025-06-04 16:45:57,882 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:45:58] 2025-06-04 16:45:57,949 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:45:58] 2025-06-04 16:45:57,953 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:45:58] 2025-06-04 16:45:57,957 [wrapper] pilotpid: 815871
[2025-06-04 18:45:58] 2025-06-04 16:45:57,961 [wrapper] Pilot exit status: 0
[2025-06-04 18:45:58] 2025-06-04 16:45:57,972 [wrapper] pandaids: 6678285540
[2025-06-04 18:45:58] 2025-06-04 16:45:57,995 [wrapper] cleanup supervisor_pilot  832517 815872
[2025-06-04 18:45:58] 2025-06-04 16:45:57,999 [wrapper] Test setup, not cleaning
[2025-06-04 18:45:58] 2025-06-04 16:45:58,003 [wrapper] apfmon messages muted
[2025-06-04 18:45:58] 2025-06-04 16:45:58,007 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:45:58] 2025-06-04 16:45:58,011 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:45:58]  *** Error codes and diagnostics ***
[2025-06-04 18:45:58]     "exeErrorCode": 0,
[2025-06-04 18:45:58]     "exeErrorDiag": "",
[2025-06-04 18:45:58]     "pilotErrorCode": 0,
[2025-06-04 18:45:58]     "pilotErrorDiag": "",
[2025-06-04 18:45:58]  *** Listing of results directory ***
[2025-06-04 18:45:58] total 388924
[2025-06-04 18:45:58] -rw-r--r-- 1 boinc boinc    495897 Jun  4 04:41 pilot3.tar.gz
[2025-06-04 18:45:58] -rw-r--r-- 1 boinc boinc      5111 Jun  4 04:48 queuedata.json
[2025-06-04 18:45:58] -rwx------ 1 boinc boinc     37140 Jun  4 04:49 runpilot2-wrapper.sh
[2025-06-04 18:45:58] -rw-r--r-- 1 boinc boinc       100 Jun  4 17:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:45:58] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 17:42 run_atlas
[2025-06-04 18:45:58] -rw-r--r-- 1 boinc boinc       105 Jun  4 17:42 job.xml
[2025-06-04 18:45:58] -rw-r--r-- 2 boinc boinc 213508480 Jun  4 17:42 EVNT.45006593._002033.pool.root.1
[2025-06-04 18:45:58] -rw-r--r-- 1 boinc boinc      6856 Jun  4 17:42 init_data.xml
[2025-06-04 18:45:58] drwxrwx--x 2 boinc boinc      4096 Jun  4 17:42 shared
[2025-06-04 18:45:58] -rw-r--r-- 2 boinc boinc    508881 Jun  4 17:42 input.tar.gz
[2025-06-04 18:45:58] -rw-r--r-- 2 boinc boinc     15093 Jun  4 17:42 start_atlas.sh
[2025-06-04 18:45:58] -rw-r--r-- 1 boinc boinc         0 Jun  4 17:42 boinc_lockfile
[2025-06-04 18:45:58] -rw-r--r-- 1 boinc boinc      2525 Jun  4 17:42 pandaJob.out
[2025-06-04 18:45:58] -rw------- 1 boinc boinc    990989 Jun  4 17:42 agis_schedconf.cvmfs.json
[2025-06-04 18:45:58] -rw------- 1 boinc boinc   1598969 Jun  4 17:42 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:45:58] drwx------ 4 boinc boinc      4096 Jun  4 17:42 pilot3
[2025-06-04 18:45:58] -rw------- 1 boinc boinc 179658420 Jun  4 18:45 HITS.45006595._050749.pool.root.1
[2025-06-04 18:45:58] -rw-r--r-- 1 boinc boinc       530 Jun  4 18:45 boinc_task_state.xml
[2025-06-04 18:45:58] -rw------- 1 boinc boinc      1032 Jun  4 18:45 memory_monitor_summary.json
[2025-06-04 18:45:58] -rw------- 1 boinc boinc    241702 Jun  4 18:45 log.45006595._050749.job.log.tgz.1
[2025-06-04 18:45:58] -rw------- 1 boinc boinc        95 Jun  4 18:45 pilot_heartbeat.json
[2025-06-04 18:45:58] -rw------- 1 boinc boinc      7669 Jun  4 18:45 heartbeat.json
[2025-06-04 18:45:58] -rw-r--r-- 1 boinc boinc      8192 Jun  4 18:45 boinc_mmap_file
[2025-06-04 18:45:58] -rw-r--r-- 1 boinc boinc        27 Jun  4 18:45 wrapper_checkpoint.txt
[2025-06-04 18:45:58] -rw------- 1 boinc boinc      4552 Jun  4 18:45 pilotlog.txt
[2025-06-04 18:45:58] -rw------- 1 boinc boinc    382204 Jun  4 18:45 log.45006595._050749.job.log.1
[2025-06-04 18:45:58] -rw------- 1 boinc boinc       357 Jun  4 18:45 output.list
[2025-06-04 18:45:58] -rw-r--r-- 1 boinc boinc       620 Jun  4 18:45 runtime_log
[2025-06-04 18:45:58] -rw------- 1 boinc boinc    645120 Jun  4 18:45 result.tar.gz
[2025-06-04 18:45:58] -rw-r--r-- 1 boinc boinc      8748 Jun  4 18:45 runtime_log.err
[2025-06-04 18:45:58] -rw------- 1 boinc boinc       661 Jun  4 18:45 AzTMDmTNtg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGvmKDmEDiQdm.diag
[2025-06-04 18:45:58] -rw-r--r-- 1 boinc boinc     21369 Jun  4 18:45 stderr.txt
[2025-06-04 18:45:58] HITS file was successfully produced:
[2025-06-04 18:45:58] -rw------- 1 boinc boinc 179658420 Jun  4 18:45 shared/HITS.pool.root.1
[2025-06-04 18:45:58]  *** Contents of shared directory: ***
[2025-06-04 18:45:58] total 385112
[2025-06-04 18:45:58] -rw-r--r-- 2 boinc boinc 213508480 Jun  4 17:42 ATLAS.root_0
[2025-06-04 18:45:58] -rw-r--r-- 2 boinc boinc    508881 Jun  4 17:42 input.tar.gz
[2025-06-04 18:45:58] -rw-r--r-- 2 boinc boinc     15093 Jun  4 17:42 start_atlas.sh
[2025-06-04 18:45:58] -rw------- 1 boinc boinc 179658420 Jun  4 18:45 HITS.pool.root.1
[2025-06-04 18:45:58] -rw------- 1 boinc boinc    645120 Jun  4 18:45 result.tar.gz
18:45:59 (812146): run_atlas exited; CPU time 14172.239363
18:45:59 (812146): called boinc_finish(0)

</stderr_txt>
]]>

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