Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:02:32 (153058): wrapper (7.7.26015): starting
04:02:32 (153058): wrapper: running run_atlas (--nthreads 9)
[2025-06-04 04:02:32] Arguments: --nthreads 9
[2025-06-04 04:02:32] Threads: 9
[2025-06-04 04:02:32] Checking for CVMFS
[2025-06-04 04:02:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 04:02:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 04:02:32] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 04:02:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 04:02:32] 2.11.2.0 6489 28517 275640 146772 2 452 15340426 18432001 5579 130560 1 65487984 99.407 81149285 29356 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 04:02:32] CVMFS is ok
[2025-06-04 04:02:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 04:02:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 04:02:32] Further information can be found at the LHC@home message board.
[2025-06-04 04:02:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 04:02:32] Checking for apptainer binary...
[2025-06-04 04:02:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 04:02:32] Running /usr/bin/apptainer --version
[2025-06-04 04:02:33] apptainer version 1.3.2-1.el7
[2025-06-04 04:02:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 04:02:34] c-210-31-2.aglt2.org
[2025-06-04 04:02:34] apptainer works
[2025-06-04 04:02:34] Set ATHENA_PROC_NUMBER=9
[2025-06-04 04:02:34] Set ATHENA_CORE_NUMBER=9
[2025-06-04 04:02:34] Starting ATLAS job with PandaID=6678285629
[2025-06-04 04:02:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 05:09:59]  *** The last 200 lines of the pilot log: ***
[2025-06-04 05:09:59]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6678285629/log.45006595._050838.job.log.tgz.1
[2025-06-04 05:09:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/28/c3/log.45006595._050838.job.log.tgz.1
[2025-06-04 05:09:59]  workdir=None
[2025-06-04 05:09:59] ]
[2025-06-04 05:09:59] 2025-06-04 09:09:32,788 | INFO     | transferring file log.45006595._050838.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6678285629/log.45006595._050838.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 05:09:59] 2025-06-04 09:09:32,789 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6678285629/log.45006595._050838.job.log.tgz.1 /tmp/boinchome/slots/2/log.45006595._050838.job
[2025-06-04 05:09:59] 2025-06-04 09:09:32,807 | INFO     | adding to output.list: log.45006595._050838.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/28/c3/log.45006595._050838.job.log.tg
[2025-06-04 05:09:59] 2025-06-04 09:09:32,808 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 05:09:59] 2025-06-04 09:09:32,808 | INFO     | summary of transferred files:
[2025-06-04 05:09:59] 2025-06-04 09:09:32,808 | INFO     |  -- lfn=log.45006595._050838.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 05:09:59] 2025-06-04 09:09:32,808 | INFO     | stage-out finished correctly
[2025-06-04 05:09:59] 2025-06-04 09:09:32,867 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 05:09:59] 2025-06-04 09:09:34,504 | INFO     | job 6678285629 has state=finished
[2025-06-04 05:09:59] 2025-06-04 09:09:34,504 | INFO     | preparing for final server update for job 6678285629 in state='finished'
[2025-06-04 05:09:59] 2025-06-04 09:09:34,505 | INFO     | this job has now completed (state=finished)
[2025-06-04 05:09:59] 2025-06-04 09:09:34,505 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 05:09:59] 2025-06-04 09:09:34,505 | INFO     | log transfer has been attempted: DONE
[2025-06-04 05:09:59] 2025-06-04 09:09:34,505 | INFO     | job 6678285629 has finished - writing final server update
[2025-06-04 05:09:59] 2025-06-04 09:09:34,506 | INFO     | total number of processed events: 400 (read)
[2025-06-04 05:09:59] 2025-06-04 09:09:34,511 | INFO     | executing command: lscpu
[2025-06-04 05:09:59] 2025-06-04 09:09:34,564 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 05:09:59] 2025-06-04 09:09:38,415 | INFO     | PID=156660 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 05:09:59] 2025-06-04 09:09:38,415 | INFO     | .. there are 10 such processes running
[2025-06-04 05:09:59] 2025-06-04 09:09:38,745 | WARNING  | process 164472 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 05:09:59] 2025-06-04 09:09:38,746 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678285629/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 05:09:59] 2025-06-04 09:09:38,746 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678285629/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 05:09:59] 2025-06-04 09:09:38,747 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3362483 B
[2025-06-04 05:09:59] 2025-06-04 09:09:38,747 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15538 B
[2025-06-04 05:09:59] 2025-06-04 09:09:38,747 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-04 05:09:59] 2025-06-04 09:09:39,415 | INFO     | 4015s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-04 05:09:59] 2025-06-04 09:09:40,542 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 05:09:59] 2025-06-04 09:09:40,542 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678285629/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 05:09:59] 2025-06-04 09:09:40,543 | INFO     | extracted standard info from prmon json
[2025-06-04 05:09:59] 2025-06-04 09:09:40,543 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 05:09:59] 2025-06-04 09:09:40,543 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 05:09:59] 2025-06-04 09:09:40,544 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 05:09:59] 2025-06-04 09:09:40,548 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 05:09:59] 2025-06-04 09:09:40,551 | INFO     | fitting pss+swap vs Time
[2025-06-04 05:09:59] 2025-06-04 09:09:40,552 | INFO     | sum of square deviations: 63666310.0
[2025-06-04 05:09:59] 2025-06-04 09:09:40,552 | INFO     | sum of deviations: -487385241.9999999
[2025-06-04 05:09:59] 2025-06-04 09:09:40,552 | INFO     | mean x: 1749026269.0
[2025-06-04 05:09:59] 2025-06-04 09:09:40,552 | INFO     | mean y: 2533231.8305084747
[2025-06-04 05:09:59] 2025-06-04 09:09:40,552 | INFO     | -- intersect: 13391868837.756498
[2025-06-04 05:09:59] 2025-06-04 09:09:40,552 | INFO     | intersect: 13391868837.756498
[2025-06-04 05:09:59] 2025-06-04 09:09:40,553 | INFO     | chi2: 0.004550544761422502
[2025-06-04 05:09:59] 2025-06-04 09:09:40,553 | INFO     | -- intersect: 13391868837.756498
[2025-06-04 05:09:59] 2025-06-04 09:09:40,553 | INFO     | current memory leak: -7.66 B/s (using 59 data points, chi2=0.00)
[2025-06-04 05:09:59] 2025-06-04 09:09:40,553 | INFO     | ..............................
[2025-06-04 05:09:59] 2025-06-04 09:09:40,553 | INFO     | . Timing measurements:
[2025-06-04 05:09:59] 2025-06-04 09:09:40,554 | INFO     | . get job = 0 s
[2025-06-04 05:09:59] 2025-06-04 09:09:40,554 | INFO     | . initial setup = 2 s
[2025-06-04 05:09:59] 2025-06-04 09:09:40,554 | INFO     | . payload setup = 8 s
[2025-06-04 05:09:59] 2025-06-04 09:09:40,554 | INFO     | . stage-in = 0 s
[2025-06-04 05:09:59] 2025-06-04 09:09:40,554 | INFO     | . payload execution = 3978 s
[2025-06-04 05:09:59] 2025-06-04 09:09:40,554 | INFO     | . stage-out = 0 s
[2025-06-04 05:09:59] 2025-06-04 09:09:40,554 | INFO     | . log creation = 0 s
[2025-06-04 05:09:59] 2025-06-04 09:09:40,554 | INFO     | ..............................
[2025-06-04 05:09:59] 2025-06-04 09:09:40,603 | INFO     | sufficient remaining disk space (56365154304 B)
[2025-06-04 05:09:59] 2025-06-04 09:09:40,618 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-04 05:09:59] 2025-06-04 09:09:40,625 | INFO     | 
[2025-06-04 05:09:59] 2025-06-04 09:09:40,625 | INFO     | job summary report
[2025-06-04 05:09:59] 2025-06-04 09:09:40,625 | INFO     | --------------------------------------------------
[2025-06-04 05:09:59] 2025-06-04 09:09:40,625 | INFO     | PanDA job id: 6678285629
[2025-06-04 05:09:59] 2025-06-04 09:09:40,625 | INFO     | task id: 45006595
[2025-06-04 05:09:59] 2025-06-04 09:09:40,625 | INFO     | errors: (none)
[2025-06-04 05:09:59] 2025-06-04 09:09:40,625 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 05:09:59] 2025-06-04 09:09:40,626 | INFO     | pilot state: finished 
[2025-06-04 05:09:59] 2025-06-04 09:09:40,626 | INFO     | transexitcode: 0
[2025-06-04 05:09:59] 2025-06-04 09:09:40,626 | INFO     | exeerrorcode: 0
[2025-06-04 05:09:59] 2025-06-04 09:09:40,626 | INFO     | exeerrordiag: 
[2025-06-04 05:09:59] 2025-06-04 09:09:40,626 | INFO     | exitcode: 0
[2025-06-04 05:09:59] 2025-06-04 09:09:40,626 | INFO     | exitmsg: OK
[2025-06-04 05:09:59] 2025-06-04 09:09:40,626 | INFO     | cpuconsumptiontime: 32441 s
[2025-06-04 05:09:59] 2025-06-04 09:09:40,626 | INFO     | nevents: 400
[2025-06-04 05:09:59] 2025-06-04 09:09:40,626 | INFO     | neventsw: 0
[2025-06-04 05:09:59] 2025-06-04 09:09:40,626 | INFO     | pid: 164472
[2025-06-04 05:09:59] 2025-06-04 09:09:40,626 | INFO     | pgrp: 164472
[2025-06-04 05:09:59] 2025-06-04 09:09:40,626 | INFO     | corecount: 9
[2025-06-04 05:09:59] 2025-06-04 09:09:40,627 | INFO     | event service: False
[2025-06-04 05:09:59] 2025-06-04 09:09:40,627 | INFO     | sizes: {0: 2405184, 5: 2405390, 11: 2405446, 3990: 2431292, 3991: 2440289, 3999: 2440403}
[2025-06-04 05:09:59] 2025-06-04 09:09:40,627 | INFO     | --------------------------------------------------
[2025-06-04 05:09:59] 2025-06-04 09:09:40,627 | INFO     | 
[2025-06-04 05:09:59] 2025-06-04 09:09:40,627 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-04 05:09:59] 2025-06-04 09:09:40,630 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-6678285629: 3657863 B (within 2537553920 B limit)
[2025-06-04 05:09:59] 2025-06-04 09:09:40,631 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-6678285629/HITS.45006595._050838.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-04 05:09:59] 2025-06-04 09:09:40,631 | INFO     | total size of present files: 0 B (workdir size: 3657863 B)
[2025-06-04 05:09:59] 2025-06-04 09:09:40,631 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-6678285629/HITS.45006595._050838.pool.root.1 since it does not exist
[2025-06-04 05:09:59] 2025-06-04 09:09:40,649 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,649 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,649 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,649 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,649 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,650 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,650 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,650 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,650 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,650 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,650 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,650 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,650 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,650 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,651 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,651 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 05:09:59] 2025-06-04 09:09:40,651 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,651 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 05:09:59] 2025-06-04 09:09:40,651 | INFO     | job 6678285629 has completed (purged errors)
[2025-06-04 05:09:59] 2025-06-04 09:09:40,651 | INFO     | overall cleanup function is called
[2025-06-04 05:09:59] 2025-06-04 09:09:40,779 | INFO     | number of running child processes to parent process 164472: 1
[2025-06-04 05:09:59] 2025-06-04 09:09:40,779 | INFO     | maximum number of monitored processes: 6
[2025-06-04 05:09:59] 2025-06-04 09:09:40,779 | INFO     | aborting job monitoring since job object (job id=6678285629) has expired
[2025-06-04 05:09:59] 2025-06-04 09:09:41,659 | INFO     | --- collectZombieJob: --- 10, [164472]
[2025-06-04 05:09:59] 2025-06-04 09:09:41,659 | INFO     | zombie collector waiting for pid 164472
[2025-06-04 05:09:59] 2025-06-04 09:09:41,659 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 05:09:59] 2025-06-04 09:09:41,659 | INFO     | collected zombie processes
[2025-06-04 05:09:59] 2025-06-04 09:09:41,659 | INFO     | will attempt to kill all subprocesses of pid=164472
[2025-06-04 05:09:59] 2025-06-04 09:09:41,837 | INFO     | process IDs to be killed: [164472] (in reverse order)
[2025-06-04 05:09:59] 2025-06-04 09:09:41,925 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 05:09:59] 2025-06-04 09:09:41,925 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 05:09:59] 2025-06-04 09:09:41,931 | INFO     | did not find any defunct processes belonging to 164472
[2025-06-04 05:09:59] 2025-06-04 09:09:41,936 | INFO     | did not find any defunct processes belonging to 164472
[2025-06-04 05:09:59] 2025-06-04 09:09:41,936 | INFO     | ready for new job
[2025-06-04 05:09:59] 2025-06-04 09:09:41,937 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 05:09:59] 2025-06-04 09:09:41,938 | INFO     | **************************************
[2025-06-04 05:09:59] 2025-06-04 09:09:41,938 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 05:09:59] 2025-06-04 09:09:41,938 | INFO     | **************************************
[2025-06-04 05:09:59] 2025-06-04 09:09:41,938 | INFO     | 
[2025-06-04 05:09:59] 2025-06-04 09:09:41,941 | INFO     | architecture information:
[2025-06-04 05:09:59] 2025-06-04 09:09:41,942 | INFO     | executing command: cat /etc/os-release
[2025-06-04 05:09:59] 2025-06-04 09:09:41,958 | INFO     | cat /etc/os-release:
[2025-06-04 05:09:59] NAME="CentOS Linux"
[2025-06-04 05:09:59] VERSION="7 (Core)"
[2025-06-04 05:09:59] ID="centos"
[2025-06-04 05:09:59] ID_LIKE="rhel fedora"
[2025-06-04 05:09:59] VERSION_ID="7"
[2025-06-04 05:09:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 05:09:59] ANSI_COLOR="0;31"
[2025-06-04 05:09:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 05:09:59] HOME_URL="https://www.centos.org/"
[2025-06-04 05:09:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 05:09:59] 
[2025-06-04 05:09:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 05:09:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 05:09:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 05:09:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 05:09:59] 
[2025-06-04 05:09:59] 2025-06-04 09:09:41,958 | INFO     | **************************************
[2025-06-04 05:09:59] 2025-06-04 09:09:42,462 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-04 05:09:59] 2025-06-04 09:09:42,483 | INFO     | sufficient remaining disk space (56367251456 B)
[2025-06-04 05:09:59] 2025-06-04 09:09:42,483 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 05:09:59] 2025-06-04 09:09:42,483 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 05:09:59] 2025-06-04 09:09:42,484 | INFO     | update_server=False
[2025-06-04 05:09:59] 2025-06-04 09:09:42,484 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 05:09:59] 2025-06-04 09:09:42,484 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:09:59] 2025-06-04 09:09:42,484 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 05:09:59] 2025-06-04 09:09:42,484 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:09:59] 2025-06-04 09:09:42,485 | INFO     | aborting loop
[2025-06-04 05:09:59] 2025-06-04 09:09:42,485 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 05:09:59] 2025-06-04 09:09:42,485 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 05:09:59] 2025-06-04 09:09:42,485 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 05:09:59] 2025-06-04 09:09:42,499 | INFO     | all job control threads have been joined
[2025-06-04 05:09:59] 2025-06-04 09:09:42,734 | INFO     | all payload control threads have been joined
[2025-06-04 05:09:59] 2025-06-04 09:09:42,854 | INFO     | all data control threads have been joined
[2025-06-04 05:09:59] 2025-06-04 09:09:43,381 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 05:09:59] 2025-06-04 09:09:43,423 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 05:09:59] 2025-06-04 09:09:43,487 | INFO     | [job] job monitor thread has finished
[2025-06-04 05:09:59] 2025-06-04 09:09:43,487 | INFO     | [job] queue monitor thread has finished
[2025-06-04 05:09:59] 2025-06-04 09:09:43,489 | INFO     | [job] retrieve thread has finished
[2025-06-04 05:09:59] 2025-06-04 09:09:43,503 | INFO     | [payload] failed_post thread has finished
[2025-06-04 05:09:59] 2025-06-04 09:09:43,504 | INFO     | [job] control thread has finished
[2025-06-04 05:09:59] 2025-06-04 09:09:43,600 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 05:09:59] 2025-06-04 09:09:43,740 | INFO     | [payload] control thread has finished
[2025-06-04 05:09:59] 2025-06-04 09:09:43,794 | INFO     | [data] copytool_in thread has finished
[2025-06-04 05:09:59] 2025-06-04 09:09:43,859 | INFO     | [data] control thread has finished
[2025-06-04 05:09:59] 2025-06-04 09:09:44,255 | INFO     | [job] validate thread has finished
[2025-06-04 05:09:59] 2025-06-04 09:09:44,352 | INFO     | [payload] validate_post thread has finished
[2025-06-04 05:09:59] 2025-06-04 09:09:44,592 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 05:09:59] 2025-06-04 09:09:44,601 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 05:09:59] 2025-06-04 09:09:45,386 | INFO     | [data] copytool_out thread has finished
[2025-06-04 05:09:59] 2025-06-04 09:09:47,429 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 05:09:59] 2025-06-04 09:09:52,801 | INFO     | job.realtimelogging is not enabled
[2025-06-04 05:09:59] 2025-06-04 09:09:53,807 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 05:09:59] 2025-06-04 09:09:54,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140717264365376)>', '<ExcThread(monitor, started 140716978185984)>']
[2025-06-04 05:09:59] 2025-06-04 09:09:54,544 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 05:09:59] 2025-06-04 09:09:54,544 | INFO     | [monitor] control thread has ended
[2025-06-04 05:09:59] 2025-06-04 09:09:59,073 | INFO     | all workflow threads have been joined
[2025-06-04 05:09:59] 2025-06-04 09:09:59,073 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 05:09:59] 2025-06-04 09:09:59,073 | INFO     | traces error code: 0
[2025-06-04 05:09:59] 2025-06-04 09:09:59,073 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 05:09:59] 2025-06-04 09:09:59,192 [wrapper] ==== pilot stdout END ====
[2025-06-04 05:09:59] 2025-06-04 09:09:59,194 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 05:09:59] 2025-06-04 09:09:59,197 [wrapper] pilotpid: 156660
[2025-06-04 05:09:59] 2025-06-04 09:09:59,199 [wrapper] Pilot exit status: 0
[2025-06-04 05:09:59] 2025-06-04 09:09:59,209 [wrapper] pandaids: 6678285629
[2025-06-04 05:09:59] 2025-06-04 09:09:59,268 [wrapper] cleanup supervisor_pilot 261815 156661
[2025-06-04 05:09:59] 2025-06-04 09:09:59,271 [wrapper] Test setup, not cleaning
[2025-06-04 05:09:59] 2025-06-04 09:09:59,276 [wrapper] apfmon messages muted
[2025-06-04 05:09:59] 2025-06-04 09:09:59,280 [wrapper] ==== wrapper stdout END ====
[2025-06-04 05:09:59] 2025-06-04 09:09:59,285 [wrapper] ==== wrapper stderr END ====
[2025-06-04 05:09:59]  *** Error codes and diagnostics ***
[2025-06-04 05:09:59]     "exeErrorCode": 0,
[2025-06-04 05:09:59]     "exeErrorDiag": "",
[2025-06-04 05:09:59]     "pilotErrorCode": 0,
[2025-06-04 05:09:59]     "pilotErrorDiag": "",
[2025-06-04 05:09:59]  *** Listing of results directory ***
[2025-06-04 05:09:59] total 386208
[2025-06-04 05:09:59] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 22:52 pilot3.tar.gz
[2025-06-04 05:09:59] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 22:55 queuedata.json
[2025-06-04 05:09:59] -rwx------ 1 boincer umatlas     37140 Jun  3 22:56 runpilot2-wrapper.sh
[2025-06-04 05:09:59] -rw-r--r-- 1 boincer umatlas       100 Jun  4 04:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 05:09:59] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 04:02 run_atlas
[2025-06-04 05:09:59] -rw-r--r-- 1 boincer umatlas       105 Jun  4 04:02 job.xml
[2025-06-04 05:09:59] -rw-r--r-- 2 boincer umatlas 214668528 Jun  4 04:02 EVNT.45006593._002037.pool.root.1
[2025-06-04 05:09:59] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 04:02 start_atlas.sh
[2025-06-04 05:09:59] drwxrwx--x 2 boincer umatlas      4096 Jun  4 04:02 shared
[2025-06-04 05:09:59] -rw-r--r-- 2 boincer umatlas    508882 Jun  4 04:02 input.tar.gz
[2025-06-04 05:09:59] -rw-r--r-- 1 boincer umatlas         0 Jun  4 04:02 boinc_lockfile
[2025-06-04 05:09:59] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 04:02 pandaJob.out
[2025-06-04 05:09:59] -rw------- 1 boincer umatlas    986745 Jun  4 04:02 agis_schedconf.cvmfs.json
[2025-06-04 05:09:59] -rw------- 1 boincer umatlas   1603667 Jun  4 04:02 agis_ddmendpoints.agis.ALL.json
[2025-06-04 05:09:59] drwx------ 4 boincer umatlas      4096 Jun  4 04:02 pilot3
[2025-06-04 05:09:59] -rw------- 1 boincer umatlas 175535740 Jun  4 05:09 HITS.45006595._050838.pool.root.1
[2025-06-04 05:09:59] -rw-r--r-- 1 boincer umatlas       530 Jun  4 05:09 boinc_task_state.xml
[2025-06-04 05:09:59] -rw------- 1 boincer umatlas      1045 Jun  4 05:09 memory_monitor_summary.json
[2025-06-04 05:09:59] -rw-r--r-- 1 boincer umatlas      6355 Jun  4 05:09 init_data.xml
[2025-06-04 05:09:59] -rw------- 1 boincer umatlas    309508 Jun  4 05:09 log.45006595._050838.job.log.tgz.1
[2025-06-04 05:09:59] -rw------- 1 boincer umatlas        95 Jun  4 05:09 pilot_heartbeat.json
[2025-06-04 05:09:59] -rw------- 1 boincer umatlas      7733 Jun  4 05:09 heartbeat.json
[2025-06-04 05:09:59] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 05:09 boinc_mmap_file
[2025-06-04 05:09:59] -rw-r--r-- 1 boincer umatlas        27 Jun  4 05:09 wrapper_checkpoint.txt
[2025-06-04 05:09:59] -rw------- 1 boincer umatlas      4548 Jun  4 05:09 pilotlog.txt
[2025-06-04 05:09:59] -rw------- 1 boincer umatlas    405986 Jun  4 05:09 log.45006595._050838.job.log.1
[2025-06-04 05:09:59] -rw------- 1 boincer umatlas       357 Jun  4 05:09 output.list
[2025-06-04 05:09:59] -rw-r--r-- 1 boincer umatlas       620 Jun  4 05:09 runtime_log
[2025-06-04 05:09:59] -rw------- 1 boincer umatlas    737280 Jun  4 05:09 result.tar.gz
[2025-06-04 05:09:59] -rw-r--r-- 1 boincer umatlas      8669 Jun  4 05:09 runtime_log.err
[2025-06-04 05:09:59] -rw------- 1 boincer umatlas       657 Jun  4 05:09 diVLDmPUtg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmiwmKDm4xB23n.diag
[2025-06-04 05:09:59] -rw-r--r-- 1 boincer umatlas     22541 Jun  4 05:09 stderr.txt
[2025-06-04 05:09:59] HITS file was successfully produced:
[2025-06-04 05:09:59] -rw------- 1 boincer umatlas 175535740 Jun  4 05:09 shared/HITS.pool.root.1
[2025-06-04 05:09:59]  *** Contents of shared directory: ***
[2025-06-04 05:09:59] total 382308
[2025-06-04 05:09:59] -rw-r--r-- 2 boincer umatlas 214668528 Jun  4 04:02 ATLAS.root_0
[2025-06-04 05:09:59] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 04:02 start_atlas.sh
[2025-06-04 05:09:59] -rw-r--r-- 2 boincer umatlas    508882 Jun  4 04:02 input.tar.gz
[2025-06-04 05:09:59] -rw------- 1 boincer umatlas 175535740 Jun  4 05:09 HITS.pool.root.1
[2025-06-04 05:09:59] -rw------- 1 boincer umatlas    737280 Jun  4 05:09 result.tar.gz
05:10:00 (153058): run_atlas exited; CPU time 32470.004402
05:10:00 (153058): called boinc_finish(0)

</stderr_txt>
]]>

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