Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:03:52 (29244): wrapper (7.7.26015): starting
18:03:52 (29244): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 18:03:52] Arguments: --nthreads 8
[2025-06-04 18:03:52] Threads: 8
[2025-06-04 18:03:52] Checking for CVMFS
[2025-06-04 18:03:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 18:03:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 18:03:53] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 18:03:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 18:03:54] 2.11.2.0 13438 33433 100836 146786 2 159 22845055 25165825 4018 130560 0 17075108 99.795 19555245 2098 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 18:03:54] CVMFS is ok
[2025-06-04 18:03:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 18:03:54] Checking for apptainer binary...
[2025-06-04 18:03:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 18:03:54] Running /usr/bin/apptainer --version
[2025-06-04 18:03:54] apptainer version 1.3.2-1.el7
[2025-06-04 18:03:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 18:04:08] cg-vwn353.simple-grid.lan
[2025-06-04 18:04:08] apptainer works
[2025-06-04 18:04:08] Set ATHENA_PROC_NUMBER=8
[2025-06-04 18:04:08] Set ATHENA_CORE_NUMBER=8
[2025-06-04 18:04:08] Starting ATLAS job with PandaID=6678285664
[2025-06-04 18:04:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 22:16:38]  *** The last 200 lines of the pilot log: ***
[2025-06-04 22:16:38] 2025-06-04 19:50:37,682 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6678285664/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 22:16:38] 2025-06-04 19:50:37,683 | INFO     | extracted standard info from prmon json
[2025-06-04 22:16:38] 2025-06-04 19:50:37,683 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 22:16:38] 2025-06-04 19:50:37,683 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 22:16:38] 2025-06-04 19:50:37,683 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 22:16:38] 2025-06-04 19:50:37,683 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 22:16:38] 2025-06-04 19:50:37,688 | INFO     | fitting pss+swap vs Time
[2025-06-04 22:16:38] 2025-06-04 19:50:37,689 | INFO     | sum of square deviations: 3301699115.0
[2025-06-04 22:16:38] 2025-06-04 19:50:37,694 | INFO     | sum of deviations: 34852129362.99999
[2025-06-04 22:16:38] 2025-06-04 19:50:37,694 | INFO     | mean x: 1749059811.5
[2025-06-04 22:16:38] 2025-06-04 19:50:37,694 | INFO     | mean y: 2445589.7
[2025-06-04 22:16:38] 2025-06-04 19:50:37,694 | INFO     | -- intersect: -18460308492.609035
[2025-06-04 22:16:38] 2025-06-04 19:50:37,695 | INFO     | intersect: -18460308492.609035
[2025-06-04 22:16:38] 2025-06-04 19:50:37,695 | INFO     | chi2: 2.2833587338316677
[2025-06-04 22:16:38] 2025-06-04 19:50:37,695 | INFO     | sum of square deviations: 3081657780.0
[2025-06-04 22:16:38] 2025-06-04 19:50:37,697 | INFO     | sum of deviations: 48321693387.99999
[2025-06-04 22:16:38] 2025-06-04 19:50:37,697 | INFO     | mean x: 1749059659.0
[2025-06-04 22:16:38] 2025-06-04 19:50:37,697 | INFO     | mean y: 2454739.111627907
[2025-06-04 22:16:38] 2025-06-04 19:50:37,698 | INFO     | -- intersect: -27423538214.433594
[2025-06-04 22:16:38] 2025-06-04 19:50:37,698 | INFO     | intersect: -27423538214.433594
[2025-06-04 22:16:38] 2025-06-04 19:50:37,698 | INFO     | chi2: 1.5004629648666474
[2025-06-04 22:16:38] 2025-06-04 19:50:37,698 | INFO     | current chi2=1.5004629648666474 (change=34.287024520726774 %)
[2025-06-04 22:16:38] 2025-06-04 19:50:37,699 | INFO     | sum of square deviations: 2871616632.5
[2025-06-04 22:16:38] 2025-06-04 19:50:37,700 | INFO     | sum of deviations: 47000384343.99999
[2025-06-04 22:16:38] 2025-06-04 19:50:37,700 | INFO     | mean x: 1749059506.5
[2025-06-04 22:16:38] 2025-06-04 19:50:37,700 | INFO     | mean y: 2453779.6095238095
[2025-06-04 22:16:38] 2025-06-04 19:50:37,700 | INFO     | -- intersect: -28624789883.64327
[2025-06-04 22:16:38] 2025-06-04 19:50:37,701 | INFO     | intersect: -28624789883.64327
[2025-06-04 22:16:38] 2025-06-04 19:50:37,701 | INFO     | chi2: 1.500410614145807
[2025-06-04 22:16:38] 2025-06-04 19:50:37,701 | INFO     | current chi2=1.500410614145807 (change=0.0034889712086419505 %)
[2025-06-04 22:16:38] 2025-06-04 19:50:37,701 | INFO     | right removable region: 209
[2025-06-04 22:16:38] 2025-06-04 19:50:37,702 | INFO     | sum of square deviations: 3081657780.0
[2025-06-04 22:16:38] 2025-06-04 19:50:37,703 | INFO     | sum of deviations: 398832090.9999981
[2025-06-04 22:16:38] 2025-06-04 19:50:37,704 | INFO     | mean x: 1749059964.0
[2025-06-04 22:16:38] 2025-06-04 19:50:37,704 | INFO     | mean y: 2469239.7627906976
[2025-06-04 22:16:38] 2025-06-04 19:50:37,704 | INFO     | -- intersect: -223896337.63967526
[2025-06-04 22:16:38] 2025-06-04 19:50:37,704 | INFO     | intersect: -223896337.63967526
[2025-06-04 22:16:38] 2025-06-04 19:50:37,704 | INFO     | chi2: 0.8438204928132677
[2025-06-04 22:16:38] 2025-06-04 19:50:37,704 | INFO     | current chi2=0.8438204928132677 (change=63.04476908027211 %)
[2025-06-04 22:16:38] 2025-06-04 19:50:37,705 | INFO     | sum of square deviations: 2871616632.5
[2025-06-04 22:16:38] 2025-06-04 19:50:37,706 | INFO     | sum of deviations: -5661785150.000001
[2025-06-04 22:16:38] 2025-06-04 19:50:37,706 | INFO     | mean x: 1749060116.5
[2025-06-04 22:16:38] 2025-06-04 19:50:37,707 | INFO     | mean y: 2473601.504761905
[2025-06-04 22:16:38] 2025-06-04 19:50:37,707 | INFO     | -- intersect: 3450984966.838265
[2025-06-04 22:16:38] 2025-06-04 19:50:37,707 | INFO     | intersect: 3450984966.838265
[2025-06-04 22:16:38] 2025-06-04 19:50:37,707 | INFO     | chi2: 0.8030011245465365
[2025-06-04 22:16:38] 2025-06-04 19:50:37,707 | INFO     | current chi2=0.8030011245465365 (change=4.837446899475128 %)
[2025-06-04 22:16:38] 2025-06-04 19:50:37,707 | INFO     | left removable region: 20
[2025-06-04 22:16:38] 2025-06-04 19:50:37,708 | INFO     | sum of square deviations: 2093397390.0
[2025-06-04 22:16:38] 2025-06-04 19:50:37,709 | INFO     | sum of deviations: 4619920461.000002
[2025-06-04 22:16:38] 2025-06-04 19:50:37,709 | INFO     | mean x: 1749060086.0
[2025-06-04 22:16:38] 2025-06-04 19:50:37,709 | INFO     | mean y: 2486202.2804232803
[2025-06-04 22:16:38] 2025-06-04 19:50:37,709 | INFO     | -- intersect: -3857515972.8583465
[2025-06-04 22:16:38] 2025-06-04 19:50:37,710 | INFO     | intersect: -3857515972.8583465
[2025-06-04 22:16:38] 2025-06-04 19:50:37,710 | INFO     | chi2: 0.000703549335219173
[2025-06-04 22:16:38] 2025-06-04 19:50:37,710 | INFO     | -- intersect: -3857515972.8583465
[2025-06-04 22:16:38] 2025-06-04 19:50:37,710 | INFO     | current memory leak: 2.21 B/s (using 189 data points, chi2=0.00)
[2025-06-04 22:16:38] 2025-06-04 19:50:37,711 | INFO     | ..............................
[2025-06-04 22:16:38] 2025-06-04 19:50:37,711 | INFO     | . Timing measurements:
[2025-06-04 22:16:38] 2025-06-04 19:50:37,711 | INFO     | . get job = 0 s
[2025-06-04 22:16:38] 2025-06-04 19:50:37,711 | INFO     | . initial setup = 3 s
[2025-06-04 22:16:38] 2025-06-04 19:50:37,711 | INFO     | . payload setup = 14 s
[2025-06-04 22:16:38] 2025-06-04 19:50:37,711 | INFO     | . stage-in = 0 s
[2025-06-04 22:16:38] 2025-06-04 19:50:37,712 | INFO     | . payload execution = 13441 s
[2025-06-04 22:16:38] 2025-06-04 19:50:37,712 | INFO     | . stage-out = 3 s
[2025-06-04 22:16:38] 2025-06-04 19:50:37,712 | INFO     | . log creation = 1 s
[2025-06-04 22:16:38] 2025-06-04 19:50:37,712 | INFO     | ..............................
[2025-06-04 22:16:38] 2025-06-04 19:50:37,873 | INFO     | 
[2025-06-04 22:16:38] 2025-06-04 19:50:37,873 | INFO     | job summary report
[2025-06-04 22:16:38] 2025-06-04 19:50:37,873 | INFO     | --------------------------------------------------
[2025-06-04 22:16:38] 2025-06-04 19:50:37,873 | INFO     | PanDA job id: 6678285664
[2025-06-04 22:16:38] 2025-06-04 19:50:37,874 | INFO     | task id: 45006595
[2025-06-04 22:16:38] 2025-06-04 19:50:37,874 | INFO     | errors: (none)
[2025-06-04 22:16:38] 2025-06-04 19:50:37,874 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 22:16:38] 2025-06-04 19:50:37,874 | INFO     | pilot state: finished 
[2025-06-04 22:16:38] 2025-06-04 19:50:37,874 | INFO     | transexitcode: 0
[2025-06-04 22:16:38] 2025-06-04 19:50:37,874 | INFO     | exeerrorcode: 0
[2025-06-04 22:16:38] 2025-06-04 19:50:37,874 | INFO     | exeerrordiag: 
[2025-06-04 22:16:38] 2025-06-04 19:50:37,874 | INFO     | exitcode: 0
[2025-06-04 22:16:38] 2025-06-04 19:50:37,874 | INFO     | exitmsg: OK
[2025-06-04 22:16:38] 2025-06-04 19:50:37,874 | INFO     | cpuconsumptiontime: 50621 s
[2025-06-04 22:16:38] 2025-06-04 19:50:37,874 | INFO     | nevents: 400
[2025-06-04 22:16:38] 2025-06-04 19:50:37,875 | INFO     | neventsw: 0
[2025-06-04 22:16:38] 2025-06-04 19:50:37,875 | INFO     | pid: 11057
[2025-06-04 22:16:38] 2025-06-04 19:50:37,875 | INFO     | pgrp: 11057
[2025-06-04 22:16:38] 2025-06-04 19:50:37,875 | INFO     | corecount: 8
[2025-06-04 22:16:38] 2025-06-04 19:50:37,875 | INFO     | event service: False
[2025-06-04 22:16:38] 2025-06-04 19:50:37,875 | INFO     | sizes: {0: 2397343, 1: 2397371, 10: 2397577, 12: 2397605, 13461: 2427443, 13466: 2436386, 13468: 2436570, 13548: 2436570}
[2025-06-04 22:16:38] 2025-06-04 19:50:37,875 | INFO     | --------------------------------------------------
[2025-06-04 22:16:38] 2025-06-04 19:50:37,875 | INFO     | 
[2025-06-04 22:16:38] 2025-06-04 19:50:37,875 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-06-04 22:16:38] 2025-06-04 19:50:38,274 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,274 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,275 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,275 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,275 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,275 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,275 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,275 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,275 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,275 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,276 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,276 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,276 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,276 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,276 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,276 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,276 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,276 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 22:16:38] 2025-06-04 19:50:38,276 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,277 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 22:16:38] 2025-06-04 19:50:38,277 | INFO     | job 6678285664 has completed (purged errors)
[2025-06-04 22:16:38] 2025-06-04 19:50:38,277 | INFO     | overall cleanup function is called
[2025-06-04 22:16:38] 2025-06-04 19:50:39,286 | INFO     | --- collectZombieJob: --- 10, [11057]
[2025-06-04 22:16:38] 2025-06-04 19:50:39,286 | INFO     | zombie collector waiting for pid 11057
[2025-06-04 22:16:38] 2025-06-04 19:50:39,287 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 22:16:38] 2025-06-04 19:50:39,287 | INFO     | collected zombie processes
[2025-06-04 22:16:38] 2025-06-04 19:50:39,287 | INFO     | will attempt to kill all subprocesses of pid=11057
[2025-06-04 22:16:38] 2025-06-04 19:50:39,430 | INFO     | process IDs to be killed: [11057] (in reverse order)
[2025-06-04 22:16:38] 2025-06-04 19:50:39,999 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 22:16:38] 2025-06-04 19:50:39,999 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 22:16:38] 2025-06-04 19:50:40,003 | INFO     | did not find any defunct processes belonging to 11057
[2025-06-04 22:16:38] 2025-06-04 19:50:40,020 | INFO     | did not find any defunct processes belonging to 11057
[2025-06-04 22:16:38] 2025-06-04 19:50:40,021 | INFO     | ready for new job
[2025-06-04 22:16:38] 2025-06-04 19:50:40,021 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 22:16:38] 2025-06-04 19:50:40,023 | INFO     | **************************************
[2025-06-04 22:16:38] 2025-06-04 19:50:40,023 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 22:16:38] 2025-06-04 19:50:40,023 | INFO     | **************************************
[2025-06-04 22:16:38] 2025-06-04 19:50:40,023 | INFO     | 
[2025-06-04 22:16:38] 2025-06-04 19:50:40,024 | INFO     | pilot is running in a VM
[2025-06-04 22:16:38] 2025-06-04 19:50:40,024 | INFO     | architecture information:
[2025-06-04 22:16:38] 2025-06-04 19:50:40,043 | INFO     | executing command: cat /etc/os-release
[2025-06-04 22:16:38] 2025-06-04 19:50:40,288 | INFO     | cat /etc/os-release:
[2025-06-04 22:16:38] NAME="CentOS Linux"
[2025-06-04 22:16:38] VERSION="7 (Core)"
[2025-06-04 22:16:38] ID="centos"
[2025-06-04 22:16:38] ID_LIKE="rhel fedora"
[2025-06-04 22:16:38] VERSION_ID="7"
[2025-06-04 22:16:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 22:16:38] ANSI_COLOR="0;31"
[2025-06-04 22:16:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 22:16:38] HOME_URL="https://www.centos.org/"
[2025-06-04 22:16:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 22:16:38] 
[2025-06-04 22:16:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 22:16:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 22:16:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 22:16:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 22:16:38] 
[2025-06-04 22:16:38] 2025-06-04 19:50:40,289 | INFO     | **************************************
[2025-06-04 22:16:38] 2025-06-04 19:50:40,792 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-06-04 22:16:38] 2025-06-04 19:50:41,059 | INFO     | sufficient remaining disk space (497119395840 B)
[2025-06-04 22:16:38] 2025-06-04 19:50:41,059 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 22:16:38] 2025-06-04 19:50:41,060 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 22:16:38] 2025-06-04 19:50:41,060 | INFO     | update_server=False
[2025-06-04 22:16:38] 2025-06-04 19:50:41,060 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 22:16:38] 2025-06-04 19:50:41,061 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:16:38] 2025-06-04 19:50:41,062 | INFO     | aborting loop
[2025-06-04 22:16:38] 2025-06-04 19:50:41,062 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 22:16:38] 2025-06-04 19:50:41,064 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 22:16:38] 2025-06-04 19:50:41,255 | INFO     | all data control threads have been joined
[2025-06-04 22:16:38] 2025-06-04 19:50:41,906 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 22:16:38] 2025-06-04 19:50:41,906 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 22:16:38] 2025-06-04 19:50:41,907 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 22:16:38] 2025-06-04 19:50:42,023 | INFO     | all job control threads have been joined
[2025-06-04 22:16:38] 2025-06-04 19:50:42,066 | INFO     | [job] retrieve thread has finished
[2025-06-04 22:16:38] 2025-06-04 19:50:42,068 | INFO     | [job] job monitor thread has finished
[2025-06-04 22:16:38] 2025-06-04 19:50:42,261 | INFO     | [data] control thread has finished
[2025-06-04 22:16:38] 2025-06-04 19:50:42,485 | INFO     | all payload control threads have been joined
[2025-06-04 22:16:38] 2025-06-04 19:50:42,890 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:16:38] 2025-06-04 19:50:42,948 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 22:16:38] 2025-06-04 19:50:42,978 | INFO     | [payload] validate_post thread has finished
[2025-06-04 22:16:38] 2025-06-04 19:50:43,006 | INFO     | [data] copytool_in thread has finished
[2025-06-04 22:16:38] 2025-06-04 19:50:43,029 | INFO     | [job] control thread has finished
[2025-06-04 22:16:38] 2025-06-04 19:50:43,069 | INFO     | [data] copytool_out thread has finished
[2025-06-04 22:16:38] 2025-06-04 19:50:43,263 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 22:16:38] 2025-06-04 19:50:43,315 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 22:16:38] 2025-06-04 19:50:43,371 | INFO     | [job] validate thread has finished
[2025-06-04 22:16:38] 2025-06-04 19:50:43,454 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 22:16:38] 2025-06-04 19:50:43,488 | INFO     | [payload] failed_post thread has finished
[2025-06-04 22:16:38] 2025-06-04 19:50:43,491 | INFO     | [payload] control thread has finished
[2025-06-04 22:16:38] 2025-06-04 19:50:43,896 | INFO     | [job] queue monitor thread has finished
[2025-06-04 22:16:38] 2025-06-04 19:50:45,073 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 22:16:38] 2025-06-04 19:50:47,094 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139782628505408)>', '<ExcThread(monitor, started 139782042670848)>']
[2025-06-04 22:16:38] 2025-06-04 19:50:47,944 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 22:16:38] 2025-06-04 19:50:47,944 | INFO     | [monitor] control thread has ended
[2025-06-04 22:16:38] 2025-06-04 19:50:52,120 | INFO     | all workflow threads have been joined
[2025-06-04 22:16:38] 2025-06-04 19:50:52,120 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 22:16:38] 2025-06-04 19:50:52,121 | INFO     | traces error code: 0
[2025-06-04 22:16:38] 2025-06-04 19:50:52,121 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 22:16:38] 2025-06-04 19:50:52,482 [wrapper] ==== pilot stdout END ====
[2025-06-04 22:16:38] 2025-06-04 19:50:52,535 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 22:16:38] 2025-06-04 19:50:52,651 [wrapper] pilotpid: 2507
[2025-06-04 22:16:38] 2025-06-04 19:50:52,757 [wrapper] Pilot exit status: 0
[2025-06-04 22:16:38] 2025-06-04 19:50:53,148 [wrapper] pandaids: 6678285664
[2025-06-04 22:16:38] 2025-06-04 19:50:53,879 [wrapper] cleanup supervisor_pilot  7217 2508
[2025-06-04 22:16:38] 2025-06-04 19:50:53,987 [wrapper] Test setup, not cleaning
[2025-06-04 22:16:38] 2025-06-04 19:50:54,093 [wrapper] apfmon messages muted
[2025-06-04 22:16:38] 2025-06-04 19:50:54,187 [wrapper] ==== wrapper stdout END ====
[2025-06-04 22:16:38] 2025-06-04 19:50:54,236 [wrapper] ==== wrapper stderr END ====
[2025-06-04 22:16:38]  *** Error codes and diagnostics ***
[2025-06-04 22:16:38]     "exeErrorCode": 0,
[2025-06-04 22:16:38]     "exeErrorDiag": "",
[2025-06-04 22:16:38]     "pilotErrorCode": 0,
[2025-06-04 22:16:38]     "pilotErrorDiag": "",
[2025-06-04 22:16:38]  *** Listing of results directory ***
[2025-06-04 22:16:38] total 395156
[2025-06-04 22:16:38] -rw-r--r--. 1 boinc boinc    495897 Jun  4 04:52 pilot3.tar.gz
[2025-06-04 22:16:38] -rw-r--r--. 1 boinc boinc      5111 Jun  4 04:55 queuedata.json
[2025-06-04 22:16:38] -rwx------. 1 boinc boinc     37140 Jun  4 04:56 runpilot2-wrapper.sh
[2025-06-04 22:16:38] -rw-r--r--. 1 boinc boinc       100 Jun  4 18:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 22:16:38] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 18:03 run_atlas
[2025-06-04 22:16:38] -rw-r--r--. 1 boinc boinc       105 Jun  4 18:03 job.xml
[2025-06-04 22:16:38] -rw-r--r--. 2 boinc boinc 218490834 Jun  4 18:03 EVNT.45006593._002038.pool.root.1
[2025-06-04 22:16:38] -rw-r--r--. 2 boinc boinc     15093 Jun  4 18:03 start_atlas.sh
[2025-06-04 22:16:38] drwxrwx--x. 2 boinc boinc        68 Jun  4 18:03 shared
[2025-06-04 22:16:38] -rw-r--r--. 2 boinc boinc    508885 Jun  4 18:03 input.tar.gz
[2025-06-04 22:16:38] -rw-r--r--. 1 boinc boinc      6393 Jun  4 18:03 init_data.xml
[2025-06-04 22:16:38] -rw-r--r--. 1 boinc boinc         0 Jun  4 18:03 boinc_lockfile
[2025-06-04 22:16:38] -rw-r--r--. 1 boinc boinc      2525 Jun  4 18:04 pandaJob.out
[2025-06-04 22:16:38] -rw-------. 1 boinc boinc    990989 Jun  4 18:04 agis_schedconf.cvmfs.json
[2025-06-04 22:16:38] drwx------. 4 boinc boinc      4096 Jun  4 18:04 pilot3
[2025-06-04 22:16:38] -rw-------. 1 boinc boinc 179162477 Jun  4 21:47 HITS.45006595._050873.pool.root.1
[2025-06-04 22:16:38] -rw-r--r--. 1 boinc boinc       531 Jun  4 21:47 boinc_task_state.xml
[2025-06-04 22:16:38] -rw-------. 1 boinc boinc      1016 Jun  4 21:49 memory_monitor_summary.json
[2025-06-04 22:16:38] -rw-------. 1 boinc boinc   1598969 Jun  4 21:49 agis_ddmendpoints.agis.ALL.json
[2025-06-04 22:16:38] -rw-------. 1 boinc boinc    391028 Jun  4 21:49 log.45006595._050873.job.log.tgz.1
[2025-06-04 22:16:38] -rw-------. 1 boinc boinc        95 Jun  4 21:49 pilot_heartbeat.json
[2025-06-04 22:16:38] -rw-------. 1 boinc boinc      7693 Jun  4 21:50 heartbeat.json
[2025-06-04 22:16:38] -rw-------. 1 boinc boinc      4417 Jun  4 21:50 pilotlog.txt
[2025-06-04 22:16:38] -rw-------. 1 boinc boinc   1192160 Jun  4 21:50 log.45006595._050873.job.log.1
[2025-06-04 22:16:38] -rw-------. 1 boinc boinc       357 Jun  4 21:50 output.list
[2025-06-04 22:16:38] -rw-r--r--. 1 boinc boinc       620 Jun  4 21:50 runtime_log
[2025-06-04 22:16:38] -rw-------. 1 boinc boinc   1597440 Jun  4 21:50 result.tar.gz
[2025-06-04 22:16:38] -rw-------. 1 boinc boinc       657 Jun  4 21:50 YjoMDmPUtg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGxmKDmQCS09n.diag
[2025-06-04 22:16:38] -rw-r--r--. 1 boinc boinc      8673 Jun  4 21:50 runtime_log.err
[2025-06-04 22:16:38] -rw-r--r--. 1 boinc boinc      8192 Jun  4 22:16 boinc_mmap_file
[2025-06-04 22:16:38] -rw-r--r--. 1 boinc boinc        28 Jun  4 22:16 wrapper_checkpoint.txt
[2025-06-04 22:16:38] -rw-r--r--. 1 boinc boinc     20501 Jun  4 22:16 stderr.txt
[2025-06-04 22:16:38] HITS file was successfully produced:
[2025-06-04 22:16:38] -rw-------. 1 boinc boinc 179162477 Jun  4 21:47 shared/HITS.pool.root.1
[2025-06-04 22:16:38]  *** Contents of shared directory: ***
[2025-06-04 22:16:38] total 390412
[2025-06-04 22:16:38] -rw-r--r--. 2 boinc boinc 218490834 Jun  4 18:03 ATLAS.root_0
[2025-06-04 22:16:38] -rw-r--r--. 2 boinc boinc     15093 Jun  4 18:03 start_atlas.sh
[2025-06-04 22:16:38] -rw-r--r--. 2 boinc boinc    508885 Jun  4 18:03 input.tar.gz
[2025-06-04 22:16:38] -rw-------. 1 boinc boinc 179162477 Jun  4 21:47 HITS.pool.root.1
[2025-06-04 22:16:38] -rw-------. 1 boinc boinc   1597440 Jun  4 21:50 result.tar.gz
22:16:40 (29244): run_atlas exited; CPU time 50800.380188
22:16:40 (29244): called boinc_finish(0)

</stderr_txt>
]]>

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