Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:53:23 (29540): wrapper (7.7.26015): starting
00:53:23 (29540): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 00:53:23] Arguments: --nthreads 8
[2025-06-05 00:53:23] Threads: 8
[2025-06-05 00:53:23] Checking for CVMFS
[2025-06-05 00:53:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:53:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:53:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:53:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:53:26] 2.11.2.0 19526 34072 104392 146797 1 16 19851446 25165825 1584 130560 0 18040016 99.819 19265943 2146 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 00:53:26] CVMFS is ok
[2025-06-05 00:53:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:53:26] Checking for apptainer binary...
[2025-06-05 00:53:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:53:26] Running /usr/bin/apptainer --version
[2025-06-05 00:53:26] apptainer version 1.3.2-1.el7
[2025-06-05 00:53:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 11:06:11] cg-vwn225.simple-grid.lan
[2025-06-05 11:06:11] apptainer works
[2025-06-05 11:06:11] Set ATHENA_PROC_NUMBER=8
[2025-06-05 11:06:11] Set ATHENA_CORE_NUMBER=8
[2025-06-05 11:06:11] Starting ATLAS job with PandaID=6678213965
[2025-06-05 11:06:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 15:31:37]  *** The last 200 lines of the pilot log: ***
[2025-06-05 15:31:37] 2025-06-05 12:59:10,355 | INFO     | extracted standard info from prmon json
[2025-06-05 15:31:37] 2025-06-05 12:59:10,356 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 15:31:37] 2025-06-05 12:59:10,356 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 15:31:37] 2025-06-05 12:59:10,356 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 15:31:37] 2025-06-05 12:59:10,356 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 15:31:37] 2025-06-05 12:59:10,361 | INFO     | fitting pss+swap vs Time
[2025-06-05 15:31:37] 2025-06-05 12:59:10,362 | INFO     | sum of square deviations: 3124858590.0
[2025-06-05 15:31:37] 2025-06-05 12:59:10,363 | INFO     | sum of deviations: 45277682703.5
[2025-06-05 15:31:37] 2025-06-05 12:59:10,371 | INFO     | mean x: 1749121640.5
[2025-06-05 15:31:37] 2025-06-05 12:59:10,371 | INFO     | mean y: 2450643.087962963
[2025-06-05 15:31:37] 2025-06-05 12:59:10,371 | INFO     | -- intersect: -25341472087.311302
[2025-06-05 15:31:37] 2025-06-05 12:59:10,371 | INFO     | intersect: -25341472087.311302
[2025-06-05 15:31:37] 2025-06-05 12:59:10,372 | INFO     | chi2: 7.1058104970040645
[2025-06-05 15:31:37] 2025-06-05 12:59:10,372 | INFO     | sum of square deviations: 2912836010.0
[2025-06-05 15:31:37] 2025-06-05 12:59:10,374 | INFO     | sum of deviations: 58739472553.00001
[2025-06-05 15:31:37] 2025-06-05 12:59:10,374 | INFO     | mean x: 1749121488.0
[2025-06-05 15:31:37] 2025-06-05 12:59:10,374 | INFO     | mean y: 2460133.146919431
[2025-06-05 15:31:37] 2025-06-05 12:59:10,374 | INFO     | -- intersect: -35269856359.616615
[2025-06-05 15:31:37] 2025-06-05 12:59:10,374 | INFO     | intersect: -35269856359.616615
[2025-06-05 15:31:37] 2025-06-05 12:59:10,375 | INFO     | chi2: 6.401244300388688
[2025-06-05 15:31:37] 2025-06-05 12:59:10,375 | INFO     | current chi2=6.401244300388688 (change=9.915353032738965 %)
[2025-06-05 15:31:37] 2025-06-05 12:59:10,375 | INFO     | right removable region: 210
[2025-06-05 15:31:37] 2025-06-05 12:59:10,375 | INFO     | sum of square deviations: 2912836010.0
[2025-06-05 15:31:37] 2025-06-05 12:59:10,384 | INFO     | sum of deviations: -29712242157.000004
[2025-06-05 15:31:37] 2025-06-05 12:59:10,384 | INFO     | mean x: 1749121793.0
[2025-06-05 15:31:37] 2025-06-05 12:59:10,385 | INFO     | mean y: 2504531.1658767774
[2025-06-05 15:31:37] 2025-06-05 12:59:10,385 | INFO     | -- intersect: 17844336373.838696
[2025-06-05 15:31:37] 2025-06-05 12:59:10,385 | INFO     | intersect: 17844336373.838696
[2025-06-05 15:31:37] 2025-06-05 12:59:10,385 | INFO     | chi2: 2.209542262538907
[2025-06-05 15:31:37] 2025-06-05 12:59:10,385 | INFO     | current chi2=2.209542262538907 (change=68.90513385530772 %)
[2025-06-05 15:31:37] 2025-06-05 12:59:10,386 | INFO     | sum of square deviations: 2710627567.5
[2025-06-05 15:31:37] 2025-06-05 12:59:10,387 | INFO     | sum of deviations: -63543532890.50001
[2025-06-05 15:31:37] 2025-06-05 12:59:10,388 | INFO     | mean x: 1749121945.5
[2025-06-05 15:31:37] 2025-06-05 12:59:10,388 | INFO     | mean y: 2529885.7524271845
[2025-06-05 15:31:37] 2025-06-05 12:59:10,388 | INFO     | -- intersect: 41006092752.88711
[2025-06-05 15:31:37] 2025-06-05 12:59:10,388 | INFO     | intersect: 41006092752.88711
[2025-06-05 15:31:37] 2025-06-05 12:59:10,388 | INFO     | chi2: 1.0004913988299806
[2025-06-05 15:31:37] 2025-06-05 12:59:10,388 | INFO     | current chi2=1.0004913988299806 (change=54.71951744066885 %)
[2025-06-05 15:31:37] 2025-06-05 12:59:10,389 | INFO     | sum of square deviations: 2518000700.0
[2025-06-05 15:31:37] 2025-06-05 12:59:10,390 | INFO     | sum of deviations: -60777921203.99998
[2025-06-05 15:31:37] 2025-06-05 12:59:10,390 | INFO     | mean x: 1749122098.0
[2025-06-05 15:31:37] 2025-06-05 12:59:10,391 | INFO     | mean y: 2527661.3333333335
[2025-06-05 15:31:37] 2025-06-05 12:59:10,391 | INFO     | -- intersect: 42221739533.839615
[2025-06-05 15:31:37] 2025-06-05 12:59:10,391 | INFO     | intersect: 42221739533.839615
[2025-06-05 15:31:37] 2025-06-05 12:59:10,391 | INFO     | chi2: 0.9904614424036527
[2025-06-05 15:31:37] 2025-06-05 12:59:10,391 | INFO     | current chi2=0.9904614424036527 (change=1.0025030138247413 %)
[2025-06-05 15:31:37] 2025-06-05 12:59:10,391 | INFO     | left removable region: 30
[2025-06-05 15:31:37] 2025-06-05 12:59:10,392 | INFO     | sum of square deviations: 1808350185.0
[2025-06-05 15:31:37] 2025-06-05 12:59:10,393 | INFO     | sum of deviations: -27356378206.5
[2025-06-05 15:31:37] 2025-06-05 12:59:10,393 | INFO     | mean x: 1749122372.5
[2025-06-05 15:31:37] 2025-06-05 12:59:10,393 | INFO     | mean y: 2523002.861111111
[2025-06-05 15:31:37] 2025-06-05 12:59:10,393 | INFO     | -- intersect: 26462914108.77989
[2025-06-05 15:31:37] 2025-06-05 12:59:10,394 | INFO     | intersect: 26462914108.77989
[2025-06-05 15:31:37] 2025-06-05 12:59:10,394 | INFO     | chi2: 0.1631049224563699
[2025-06-05 15:31:37] 2025-06-05 12:59:10,394 | INFO     | -- intersect: 26462914108.77989
[2025-06-05 15:31:37] 2025-06-05 12:59:10,394 | INFO     | current memory leak: -15.13 B/s (using 180 data points, chi2=0.16)
[2025-06-05 15:31:37] 2025-06-05 12:59:10,395 | INFO     | ..............................
[2025-06-05 15:31:37] 2025-06-05 12:59:10,395 | INFO     | . Timing measurements:
[2025-06-05 15:31:37] 2025-06-05 12:59:10,395 | INFO     | . get job = 0 s
[2025-06-05 15:31:37] 2025-06-05 12:59:10,395 | INFO     | . initial setup = 7 s
[2025-06-05 15:31:37] 2025-06-05 12:59:10,396 | INFO     | . payload setup = 173 s
[2025-06-05 15:31:37] 2025-06-05 12:59:10,396 | INFO     | . stage-in = 0 s
[2025-06-05 15:31:37] 2025-06-05 12:59:10,396 | INFO     | . payload execution = 13317 s
[2025-06-05 15:31:37] 2025-06-05 12:59:10,396 | INFO     | . stage-out = 4 s
[2025-06-05 15:31:37] 2025-06-05 12:59:10,396 | INFO     | . log creation = 0 s
[2025-06-05 15:31:37] 2025-06-05 12:59:10,396 | INFO     | ..............................
[2025-06-05 15:31:37] 2025-06-05 12:59:10,537 | INFO     | 
[2025-06-05 15:31:37] 2025-06-05 12:59:10,537 | INFO     | job summary report
[2025-06-05 15:31:37] 2025-06-05 12:59:10,537 | INFO     | --------------------------------------------------
[2025-06-05 15:31:37] 2025-06-05 12:59:10,537 | INFO     | PanDA job id: 6678213965
[2025-06-05 15:31:37] 2025-06-05 12:59:10,537 | INFO     | task id: 45006595
[2025-06-05 15:31:37] 2025-06-05 12:59:10,537 | INFO     | errors: (none)
[2025-06-05 15:31:37] 2025-06-05 12:59:10,538 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 15:31:37] 2025-06-05 12:59:10,538 | INFO     | pilot state: finished 
[2025-06-05 15:31:37] 2025-06-05 12:59:10,538 | INFO     | transexitcode: 0
[2025-06-05 15:31:37] 2025-06-05 12:59:10,538 | INFO     | exeerrorcode: 0
[2025-06-05 15:31:37] 2025-06-05 12:59:10,538 | INFO     | exeerrordiag: 
[2025-06-05 15:31:37] 2025-06-05 12:59:10,538 | INFO     | exitcode: 0
[2025-06-05 15:31:37] 2025-06-05 12:59:10,538 | INFO     | exitmsg: OK
[2025-06-05 15:31:37] 2025-06-05 12:59:10,538 | INFO     | cpuconsumptiontime: 48898 s
[2025-06-05 15:31:37] 2025-06-05 12:59:10,538 | INFO     | nevents: 400
[2025-06-05 15:31:37] 2025-06-05 12:59:10,538 | INFO     | neventsw: 0
[2025-06-05 15:31:37] 2025-06-05 12:59:10,538 | INFO     | pid: 23174
[2025-06-05 15:31:37] 2025-06-05 12:59:10,538 | INFO     | pgrp: 23174
[2025-06-05 15:31:37] 2025-06-05 12:59:10,539 | INFO     | corecount: 8
[2025-06-05 15:31:37] 2025-06-05 12:59:10,539 | INFO     | event service: False
[2025-06-05 15:31:37] 2025-06-05 12:59:10,539 | INFO     | sizes: {0: 2397339, 1: 2397339, 11: 2397367, 22: 2397395, 33: 2397423, 44: 2397479, 54: 2397635, 65: 2397663, 76: 2397691, 87: 2397747, 94: 2397981, 97: 2398289, 1
[2025-06-05 15:31:37] 2025-06-05 12:59:10,539 | INFO     | --------------------------------------------------
[2025-06-05 15:31:37] 2025-06-05 12:59:10,539 | INFO     | 
[2025-06-05 15:31:37] 2025-06-05 12:59:10,539 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-06-05 15:31:37] 2025-06-05 12:59:11,030 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,031 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,031 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,031 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,031 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,031 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,031 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,031 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,031 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,031 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,032 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,032 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,032 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,032 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,032 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,032 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,032 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,032 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 15:31:37] 2025-06-05 12:59:11,032 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,032 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 15:31:37] 2025-06-05 12:59:11,033 | INFO     | job 6678213965 has completed (purged errors)
[2025-06-05 15:31:37] 2025-06-05 12:59:11,033 | INFO     | overall cleanup function is called
[2025-06-05 15:31:37] 2025-06-05 12:59:12,042 | INFO     | --- collectZombieJob: --- 10, [23174]
[2025-06-05 15:31:37] 2025-06-05 12:59:12,042 | INFO     | zombie collector waiting for pid 23174
[2025-06-05 15:31:37] 2025-06-05 12:59:12,042 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 15:31:37] 2025-06-05 12:59:12,042 | INFO     | collected zombie processes
[2025-06-05 15:31:37] 2025-06-05 12:59:12,043 | INFO     | will attempt to kill all subprocesses of pid=23174
[2025-06-05 15:31:37] 2025-06-05 12:59:12,151 | INFO     | process IDs to be killed: [23174] (in reverse order)
[2025-06-05 15:31:37] 2025-06-05 12:59:12,911 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 15:31:37] 2025-06-05 12:59:12,912 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 15:31:37] 2025-06-05 12:59:12,915 | INFO     | did not find any defunct processes belonging to 23174
[2025-06-05 15:31:37] 2025-06-05 12:59:12,919 | INFO     | did not find any defunct processes belonging to 23174
[2025-06-05 15:31:37] 2025-06-05 12:59:12,919 | INFO     | ready for new job
[2025-06-05 15:31:37] 2025-06-05 12:59:12,919 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 15:31:37] 2025-06-05 12:59:12,921 | INFO     | **************************************
[2025-06-05 15:31:37] 2025-06-05 12:59:12,922 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 15:31:37] 2025-06-05 12:59:12,922 | INFO     | **************************************
[2025-06-05 15:31:37] 2025-06-05 12:59:12,922 | INFO     | 
[2025-06-05 15:31:37] 2025-06-05 12:59:12,922 | INFO     | pilot is running in a VM
[2025-06-05 15:31:37] 2025-06-05 12:59:12,923 | INFO     | architecture information:
[2025-06-05 15:31:37] 2025-06-05 12:59:12,935 | INFO     | executing command: cat /etc/os-release
[2025-06-05 15:31:37] 2025-06-05 12:59:13,293 | INFO     | cat /etc/os-release:
[2025-06-05 15:31:37] NAME="CentOS Linux"
[2025-06-05 15:31:37] VERSION="7 (Core)"
[2025-06-05 15:31:37] ID="centos"
[2025-06-05 15:31:37] ID_LIKE="rhel fedora"
[2025-06-05 15:31:37] VERSION_ID="7"
[2025-06-05 15:31:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 15:31:37] ANSI_COLOR="0;31"
[2025-06-05 15:31:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 15:31:37] HOME_URL="https://www.centos.org/"
[2025-06-05 15:31:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 15:31:37] 
[2025-06-05 15:31:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 15:31:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 15:31:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 15:31:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 15:31:37] 
[2025-06-05 15:31:37] 2025-06-05 12:59:13,293 | INFO     | **************************************
[2025-06-05 15:31:37] 2025-06-05 12:59:13,797 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-06-05 15:31:37] 2025-06-05 12:59:13,945 | INFO     | sufficient remaining disk space (497740152832 B)
[2025-06-05 15:31:37] 2025-06-05 12:59:13,946 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 15:31:37] 2025-06-05 12:59:13,946 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 15:31:37] 2025-06-05 12:59:13,946 | INFO     | update_server=False
[2025-06-05 15:31:37] 2025-06-05 12:59:13,946 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 15:31:37] 2025-06-05 12:59:13,946 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 15:31:37] 2025-06-05 12:59:13,947 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 15:31:37] 2025-06-05 12:59:13,947 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 15:31:37] 2025-06-05 12:59:13,947 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 15:31:37] 2025-06-05 12:59:13,948 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 15:31:37] 2025-06-05 12:59:13,951 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 15:31:37] 2025-06-05 12:59:13,951 | INFO     | aborting loop
[2025-06-05 15:31:37] 2025-06-05 12:59:14,318 | INFO     | all data control threads have been joined
[2025-06-05 15:31:37] 2025-06-05 12:59:14,559 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 15:31:37] 2025-06-05 12:59:14,952 | INFO     | [job] retrieve thread has finished
[2025-06-05 15:31:37] 2025-06-05 12:59:14,957 | INFO     | [job] job monitor thread has finished
[2025-06-05 15:31:37] 2025-06-05 12:59:15,052 | INFO     | all job control threads have been joined
[2025-06-05 15:31:37] 2025-06-05 12:59:15,286 | INFO     | all payload control threads have been joined
[2025-06-05 15:31:37] 2025-06-05 12:59:15,323 | INFO     | [data] control thread has finished
[2025-06-05 15:31:37] 2025-06-05 12:59:15,415 | INFO     | [payload] validate_post thread has finished
[2025-06-05 15:31:37] 2025-06-05 12:59:15,468 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 15:31:37] 2025-06-05 12:59:15,553 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 15:31:37] 2025-06-05 12:59:15,832 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 15:31:37] 2025-06-05 12:59:15,918 | INFO     | [data] copytool_in thread has finished
[2025-06-05 15:31:37] 2025-06-05 12:59:16,035 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 15:31:37] 2025-06-05 12:59:16,058 | INFO     | [job] control thread has finished
[2025-06-05 15:31:37] 2025-06-05 12:59:16,073 | INFO     | [payload] failed_post thread has finished
[2025-06-05 15:31:37] 2025-06-05 12:59:16,085 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 15:31:37] 2025-06-05 12:59:16,108 | INFO     | [job] validate thread has finished
[2025-06-05 15:31:37] 2025-06-05 12:59:16,291 | INFO     | [payload] control thread has finished
[2025-06-05 15:31:37] 2025-06-05 12:59:16,559 | INFO     | [job] queue monitor thread has finished
[2025-06-05 15:31:37] 2025-06-05 12:59:16,566 | INFO     | [data] copytool_out thread has finished
[2025-06-05 15:31:37] 2025-06-05 12:59:17,955 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 15:31:37] 2025-06-05 12:59:19,391 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139899916207936)>', '<ExcThread(monitor, started 139899466397440)>']
[2025-06-05 15:31:37] 2025-06-05 12:59:19,984 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 15:31:37] 2025-06-05 12:59:19,984 | INFO     | [monitor] control thread has ended
[2025-06-05 15:31:37] 2025-06-05 12:59:24,417 | INFO     | all workflow threads have been joined
[2025-06-05 15:31:37] 2025-06-05 12:59:24,417 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 15:31:37] 2025-06-05 12:59:24,417 | INFO     | traces error code: 0
[2025-06-05 15:31:37] 2025-06-05 12:59:24,418 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 15:31:37] 2025-06-05 12:59:24,803 [wrapper] ==== pilot stdout END ====
[2025-06-05 15:31:37] 2025-06-05 12:59:24,846 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 15:31:37] 2025-06-05 12:59:24,909 [wrapper] pilotpid: 15135
[2025-06-05 15:31:37] 2025-06-05 12:59:24,987 [wrapper] Pilot exit status: 0
[2025-06-05 15:31:37] 2025-06-05 12:59:25,362 [wrapper] pandaids: 6678213965
[2025-06-05 15:31:37] 2025-06-05 12:59:26,108 [wrapper] cleanup supervisor_pilot 17609 15136
[2025-06-05 15:31:37] 2025-06-05 12:59:26,191 [wrapper] Test setup, not cleaning
[2025-06-05 15:31:37] 2025-06-05 12:59:26,337 [wrapper] apfmon messages muted
[2025-06-05 15:31:37] 2025-06-05 12:59:26,406 [wrapper] ==== wrapper stdout END ====
[2025-06-05 15:31:37] 2025-06-05 12:59:26,483 [wrapper] ==== wrapper stderr END ====
[2025-06-05 15:31:37]  *** Error codes and diagnostics ***
[2025-06-05 15:31:37]     "exeErrorCode": 0,
[2025-06-05 15:31:37]     "exeErrorDiag": "",
[2025-06-05 15:31:37]     "pilotErrorCode": 0,
[2025-06-05 15:31:37]     "pilotErrorDiag": "",
[2025-06-05 15:31:37]  *** Listing of results directory ***
[2025-06-05 15:31:37] total 385696
[2025-06-05 15:31:37] -rw-r--r--. 1 boinc boinc    495897 Jun  4 01:58 pilot3.tar.gz
[2025-06-05 15:31:37] -rwx------. 1 boinc boinc     37140 Jun  4 02:31 runpilot2-wrapper.sh
[2025-06-05 15:31:37] -rw-r--r--. 1 boinc boinc      5111 Jun  4 02:31 queuedata.json
[2025-06-05 15:31:37] -rw-r--r--. 1 boinc boinc       100 Jun  5 00:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 15:31:37] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 00:53 run_atlas
[2025-06-05 15:31:37] -rw-r--r--. 1 boinc boinc       105 Jun  5 00:53 job.xml
[2025-06-05 15:31:37] -rw-r--r--. 1 boinc boinc      6392 Jun  5 00:53 init_data.xml
[2025-06-05 15:31:37] -rw-r--r--. 2 boinc boinc 215977160 Jun  5 00:53 EVNT.45006593._001958.pool.root.1
[2025-06-05 15:31:37] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:53 start_atlas.sh
[2025-06-05 15:31:37] drwxrwx--x. 2 boinc boinc        68 Jun  5 00:53 shared
[2025-06-05 15:31:37] -rw-r--r--. 2 boinc boinc    508874 Jun  5 00:53 input.tar.gz
[2025-06-05 15:31:37] -rw-r--r--. 1 boinc boinc         0 Jun  5 00:53 boinc_lockfile
[2025-06-05 15:31:37] -rw-r--r--. 1 boinc boinc      2523 Jun  5 11:06 pandaJob.out
[2025-06-05 15:31:37] -rw-------. 1 boinc boinc    983281 Jun  5 11:09 agis_schedconf.cvmfs.json
[2025-06-05 15:31:37] drwx------. 4 boinc boinc      4096 Jun  5 11:09 pilot3
[2025-06-05 15:31:37] -rw-------. 1 boinc boinc 172080598 Jun  5 14:56 HITS.45006595._048805.pool.root.1
[2025-06-05 15:31:37] -rw-r--r--. 1 boinc boinc       530 Jun  5 14:56 boinc_task_state.xml
[2025-06-05 15:31:37] -rw-------. 1 boinc boinc      1016 Jun  5 14:57 memory_monitor_summary.json
[2025-06-05 15:31:37] -rw-------. 1 boinc boinc   1598969 Jun  5 14:57 agis_ddmendpoints.agis.ALL.json
[2025-06-05 15:31:37] -rw-------. 1 boinc boinc    366706 Jun  5 14:57 log.45006595._048805.job.log.tgz.1
[2025-06-05 15:31:37] -rw-------. 1 boinc boinc        95 Jun  5 14:58 pilot_heartbeat.json
[2025-06-05 15:31:37] -rw-------. 1 boinc boinc      7695 Jun  5 14:59 heartbeat.json
[2025-06-05 15:31:37] -rw-------. 1 boinc boinc      4539 Jun  5 14:59 pilotlog.txt
[2025-06-05 15:31:37] -rw-------. 1 boinc boinc   1172648 Jun  5 14:59 log.45006595._048805.job.log.1
[2025-06-05 15:31:37] -rw-------. 1 boinc boinc       357 Jun  5 14:59 output.list
[2025-06-05 15:31:37] -rw-r--r--. 1 boinc boinc       620 Jun  5 14:59 runtime_log
[2025-06-05 15:31:37] -rw-------. 1 boinc boinc   1556480 Jun  5 14:59 result.tar.gz
[2025-06-05 15:31:37] -rw-r--r--. 1 boinc boinc      8659 Jun  5 14:59 runtime_log.err
[2025-06-05 15:31:37] -rw-------. 1 boinc boinc       657 Jun  5 14:59 M0kNDmZDrg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmyLaKDmCE27nm.diag
[2025-06-05 15:31:37] -rw-r--r--. 1 boinc boinc        28 Jun  5 15:31 wrapper_checkpoint.txt
[2025-06-05 15:31:37] -rw-r--r--. 1 boinc boinc      8192 Jun  5 15:31 boinc_mmap_file
[2025-06-05 15:31:37] -rw-r--r--. 1 boinc boinc     20514 Jun  5 15:31 stderr.txt
[2025-06-05 15:31:37] HITS file was successfully produced:
[2025-06-05 15:31:37] -rw-------. 1 boinc boinc 172080598 Jun  5 14:56 shared/HITS.pool.root.1
[2025-06-05 15:31:37]  *** Contents of shared directory: ***
[2025-06-05 15:31:37] total 381000
[2025-06-05 15:31:37] -rw-r--r--. 2 boinc boinc 215977160 Jun  5 00:53 ATLAS.root_0
[2025-06-05 15:31:37] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:53 start_atlas.sh
[2025-06-05 15:31:37] -rw-r--r--. 2 boinc boinc    508874 Jun  5 00:53 input.tar.gz
[2025-06-05 15:31:37] -rw-------. 1 boinc boinc 172080598 Jun  5 14:56 HITS.pool.root.1
[2025-06-05 15:31:37] -rw-------. 1 boinc boinc   1556480 Jun  5 14:59 result.tar.gz
15:31:39 (29540): run_atlas exited; CPU time 49072.514173
15:31:39 (29540): called boinc_finish(0)

</stderr_txt>
]]>

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