Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:37:00 (30181): wrapper (7.7.26015): starting
17:37:00 (30181): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 17:37:00] Arguments: --nthreads 8
[2025-06-04 17:37:00] Threads: 8
[2025-06-04 17:37:00] Checking for CVMFS
[2025-06-04 17:37:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 17:37:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 17:37:01] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 17:37:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 17:37:02] 2.11.2.0 18967 33492 95392 146786 1 59 23741562 25165824 3906 130560 0 17107974 99.818 18861665 2477 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 17:37:02] CVMFS is ok
[2025-06-04 17:37:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 17:37:02] Checking for apptainer binary...
[2025-06-04 17:37:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 17:37:02] Running /usr/bin/apptainer --version
[2025-06-04 17:37:02] apptainer version 1.3.2-1.el7
[2025-06-04 17:37:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 17:37:12] cg-vwn474.simple-grid.lan
[2025-06-04 17:37:12] apptainer works
[2025-06-04 17:37:12] Set ATHENA_PROC_NUMBER=8
[2025-06-04 17:37:12] Set ATHENA_CORE_NUMBER=8
[2025-06-04 17:37:12] Starting ATLAS job with PandaID=6678285533
[2025-06-04 17:37:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 21:43:18]  *** The last 200 lines of the pilot log: ***
[2025-06-04 21:43:18] 2025-06-04 19:13:16,711 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 21:43:18] 2025-06-04 19:13:16,711 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 21:43:18] 2025-06-04 19:13:16,711 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 21:43:18] 2025-06-04 19:13:16,711 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 21:43:18] 2025-06-04 19:13:16,715 | INFO     | fitting pss+swap vs Time
[2025-06-04 21:43:18] 2025-06-04 19:13:16,716 | INFO     | sum of square deviations: 2480604650.0
[2025-06-04 21:43:18] 2025-06-04 19:13:16,717 | INFO     | sum of deviations: 80578380843.0
[2025-06-04 21:43:18] 2025-06-04 19:13:16,718 | INFO     | mean x: 1749058201.5
[2025-06-04 21:43:18] 2025-06-04 19:13:16,718 | INFO     | mean y: 2406781.56
[2025-06-04 21:43:18] 2025-06-04 19:13:16,718 | INFO     | -- intersect: -56812885359.82966
[2025-06-04 21:43:18] 2025-06-04 19:13:16,718 | INFO     | intersect: -56812885359.82966
[2025-06-04 21:43:18] 2025-06-04 19:13:16,718 | INFO     | chi2: 7.057414875786767
[2025-06-04 21:43:18] 2025-06-04 19:13:16,719 | INFO     | sum of square deviations: 2299168690.0
[2025-06-04 21:43:18] 2025-06-04 19:13:16,720 | INFO     | sum of deviations: 91464334214.99997
[2025-06-04 21:43:18] 2025-06-04 19:13:16,721 | INFO     | mean x: 1749058049.0
[2025-06-04 21:43:18] 2025-06-04 19:13:16,721 | INFO     | mean y: 2415707.0923076924
[2025-06-04 21:43:18] 2025-06-04 19:13:16,721 | INFO     | -- intersect: -69577702816.16917
[2025-06-04 21:43:18] 2025-06-04 19:13:16,721 | INFO     | intersect: -69577702816.16917
[2025-06-04 21:43:18] 2025-06-04 19:13:16,721 | INFO     | chi2: 6.360676932065856
[2025-06-04 21:43:18] 2025-06-04 19:13:16,721 | INFO     | current chi2=6.360676932065856 (change=9.872424336442851 %)
[2025-06-04 21:43:18] 2025-06-04 19:13:16,721 | INFO     | right removable region: 194
[2025-06-04 21:43:18] 2025-06-04 19:13:16,722 | INFO     | sum of square deviations: 2299168690.0
[2025-06-04 21:43:18] 2025-06-04 19:13:16,723 | INFO     | sum of deviations: 13037004119.0
[2025-06-04 21:43:18] 2025-06-04 19:13:16,724 | INFO     | mean x: 1749058354.0
[2025-06-04 21:43:18] 2025-06-04 19:13:16,724 | INFO     | mean y: 2463496.0
[2025-06-04 21:43:18] 2025-06-04 19:13:16,724 | INFO     | -- intersect: -9915243310.223671
[2025-06-04 21:43:18] 2025-06-04 19:13:16,724 | INFO     | intersect: -9915243310.223671
[2025-06-04 21:43:18] 2025-06-04 19:13:16,724 | INFO     | chi2: 2.2682372728662386
[2025-06-04 21:43:18] 2025-06-04 19:13:16,725 | INFO     | current chi2=2.2682372728662386 (change=67.86022484453454 %)
[2025-06-04 21:43:18] 2025-06-04 19:13:16,725 | INFO     | sum of square deviations: 2126802667.5
[2025-06-04 21:43:18] 2025-06-04 19:13:16,726 | INFO     | sum of deviations: -20540511486.5
[2025-06-04 21:43:18] 2025-06-04 19:13:16,727 | INFO     | mean x: 1749058506.5
[2025-06-04 21:43:18] 2025-06-04 19:13:16,727 | INFO     | mean y: 2492983.2263157894
[2025-06-04 21:43:18] 2025-06-04 19:13:16,727 | INFO     | -- intersect: 16894777769.36235
[2025-06-04 21:43:18] 2025-06-04 19:13:16,727 | INFO     | intersect: 16894777769.36235
[2025-06-04 21:43:18] 2025-06-04 19:13:16,727 | INFO     | chi2: 0.8714560063809308
[2025-06-04 21:43:18] 2025-06-04 19:13:16,727 | INFO     | current chi2=0.8714560063809308 (change=61.58003323524779 %)
[2025-06-04 21:43:18] 2025-06-04 19:13:16,728 | INFO     | sum of square deviations: 1963274020.0
[2025-06-04 21:43:18] 2025-06-04 19:13:16,729 | INFO     | sum of deviations: -18637507266.0
[2025-06-04 21:43:18] 2025-06-04 19:13:16,729 | INFO     | mean x: 1749058659.0
[2025-06-04 21:43:18] 2025-06-04 19:13:16,729 | INFO     | mean y: 2491149.8378378376
[2025-06-04 21:43:18] 2025-06-04 19:13:16,729 | INFO     | -- intersect: 16606435955.144594
[2025-06-04 21:43:18] 2025-06-04 19:13:16,729 | INFO     | intersect: 16606435955.144594
[2025-06-04 21:43:18] 2025-06-04 19:13:16,730 | INFO     | chi2: 0.8528654979947815
[2025-06-04 21:43:18] 2025-06-04 19:13:16,730 | INFO     | current chi2=0.8528654979947815 (change=2.1332698667548113 %)
[2025-06-04 21:43:18] 2025-06-04 19:13:16,730 | INFO     | left removable region: 30
[2025-06-04 21:43:18] 2025-06-04 19:13:16,730 | INFO     | sum of square deviations: 1367709365.0
[2025-06-04 21:43:18] 2025-06-04 19:13:16,731 | INFO     | sum of deviations: 1849640139.5000002
[2025-06-04 21:43:18] 2025-06-04 19:13:16,731 | INFO     | mean x: 1749058933.5
[2025-06-04 21:43:18] 2025-06-04 19:13:16,731 | INFO     | mean y: 2494753.6158536584
[2025-06-04 21:43:18] 2025-06-04 19:13:16,731 | INFO     | -- intersect: -2362868599.5499425
[2025-06-04 21:43:18] 2025-06-04 19:13:16,732 | INFO     | intersect: -2362868599.5499425
[2025-06-04 21:43:18] 2025-06-04 19:13:16,732 | INFO     | chi2: 0.00018134159151361496
[2025-06-04 21:43:18] 2025-06-04 19:13:16,732 | INFO     | -- intersect: -2362868599.5499425
[2025-06-04 21:43:18] 2025-06-04 19:13:16,732 | INFO     | current memory leak: 1.35 B/s (using 164 data points, chi2=0.00)
[2025-06-04 21:43:18] 2025-06-04 19:13:16,733 | INFO     | ..............................
[2025-06-04 21:43:18] 2025-06-04 19:13:16,733 | INFO     | . Timing measurements:
[2025-06-04 21:43:18] 2025-06-04 19:13:16,733 | INFO     | . get job = 0 s
[2025-06-04 21:43:18] 2025-06-04 19:13:16,733 | INFO     | . initial setup = 4 s
[2025-06-04 21:43:18] 2025-06-04 19:13:16,734 | INFO     | . payload setup = 161 s
[2025-06-04 21:43:18] 2025-06-04 19:13:16,734 | INFO     | . stage-in = 0 s
[2025-06-04 21:43:18] 2025-06-04 19:13:16,734 | INFO     | . payload execution = 12324 s
[2025-06-04 21:43:18] 2025-06-04 19:13:16,734 | INFO     | . stage-out = 3 s
[2025-06-04 21:43:18] 2025-06-04 19:13:16,734 | INFO     | . log creation = 0 s
[2025-06-04 21:43:18] 2025-06-04 19:13:16,734 | INFO     | ..............................
[2025-06-04 21:43:18] 2025-06-04 19:13:16,853 | INFO     | 
[2025-06-04 21:43:18] 2025-06-04 19:13:16,853 | INFO     | job summary report
[2025-06-04 21:43:18] 2025-06-04 19:13:16,853 | INFO     | --------------------------------------------------
[2025-06-04 21:43:18] 2025-06-04 19:13:16,853 | INFO     | PanDA job id: 6678285533
[2025-06-04 21:43:18] 2025-06-04 19:13:16,853 | INFO     | task id: 45006595
[2025-06-04 21:43:18] 2025-06-04 19:13:16,854 | INFO     | errors: (none)
[2025-06-04 21:43:18] 2025-06-04 19:13:16,854 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 21:43:18] 2025-06-04 19:13:16,854 | INFO     | pilot state: finished 
[2025-06-04 21:43:18] 2025-06-04 19:13:16,854 | INFO     | transexitcode: 0
[2025-06-04 21:43:18] 2025-06-04 19:13:16,854 | INFO     | exeerrorcode: 0
[2025-06-04 21:43:18] 2025-06-04 19:13:16,854 | INFO     | exeerrordiag: 
[2025-06-04 21:43:18] 2025-06-04 19:13:16,854 | INFO     | exitcode: 0
[2025-06-04 21:43:18] 2025-06-04 19:13:16,854 | INFO     | exitmsg: OK
[2025-06-04 21:43:18] 2025-06-04 19:13:16,854 | INFO     | cpuconsumptiontime: 44992 s
[2025-06-04 21:43:18] 2025-06-04 19:13:16,854 | INFO     | nevents: 400
[2025-06-04 21:43:18] 2025-06-04 19:13:16,854 | INFO     | neventsw: 0
[2025-06-04 21:43:18] 2025-06-04 19:13:16,854 | INFO     | pid: 9876
[2025-06-04 21:43:18] 2025-06-04 19:13:16,855 | INFO     | pgrp: 9876
[2025-06-04 21:43:18] 2025-06-04 19:13:16,855 | INFO     | corecount: 8
[2025-06-04 21:43:18] 2025-06-04 19:13:16,855 | INFO     | event service: False
[2025-06-04 21:43:18] 2025-06-04 19:13:16,855 | INFO     | sizes: {0: 2397171, 1: 2397370, 12: 2397370, 22: 2397398, 33: 2397426, 44: 2397482, 55: 2397638, 65: 2397666, 76: 2397694, 87: 2397750, 89: 2397984, 97: 2398320, 1
[2025-06-04 21:43:18] 2025-06-04 19:13:16,855 | INFO     | --------------------------------------------------
[2025-06-04 21:43:18] 2025-06-04 19:13:16,855 | INFO     | 
[2025-06-04 21:43:18] 2025-06-04 19:13:16,855 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-04 21:43:18] 2025-06-04 19:13:17,282 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,282 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,282 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,282 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,282 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,282 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,282 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,282 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,283 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,283 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,283 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,283 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,283 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,283 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,283 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,283 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,283 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,283 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 21:43:18] 2025-06-04 19:13:17,283 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,283 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 21:43:18] 2025-06-04 19:13:17,284 | INFO     | job 6678285533 has completed (purged errors)
[2025-06-04 21:43:18] 2025-06-04 19:13:17,284 | INFO     | overall cleanup function is called
[2025-06-04 21:43:18] 2025-06-04 19:13:18,292 | INFO     | --- collectZombieJob: --- 10, [9876]
[2025-06-04 21:43:18] 2025-06-04 19:13:18,292 | INFO     | zombie collector waiting for pid 9876
[2025-06-04 21:43:18] 2025-06-04 19:13:18,293 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 21:43:18] 2025-06-04 19:13:18,293 | INFO     | collected zombie processes
[2025-06-04 21:43:18] 2025-06-04 19:13:18,293 | INFO     | will attempt to kill all subprocesses of pid=9876
[2025-06-04 21:43:18] 2025-06-04 19:13:18,396 | INFO     | process IDs to be killed: [9876] (in reverse order)
[2025-06-04 21:43:18] 2025-06-04 19:13:19,029 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 21:43:18] 2025-06-04 19:13:19,030 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 21:43:18] 2025-06-04 19:13:19,033 | INFO     | did not find any defunct processes belonging to 9876
[2025-06-04 21:43:18] 2025-06-04 19:13:19,037 | INFO     | did not find any defunct processes belonging to 9876
[2025-06-04 21:43:18] 2025-06-04 19:13:19,037 | INFO     | ready for new job
[2025-06-04 21:43:18] 2025-06-04 19:13:19,037 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 21:43:18] 2025-06-04 19:13:19,039 | INFO     | **************************************
[2025-06-04 21:43:18] 2025-06-04 19:13:19,039 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 21:43:18] 2025-06-04 19:13:19,040 | INFO     | **************************************
[2025-06-04 21:43:18] 2025-06-04 19:13:19,040 | INFO     | 
[2025-06-04 21:43:18] 2025-06-04 19:13:19,040 | INFO     | pilot is running in a VM
[2025-06-04 21:43:18] 2025-06-04 19:13:19,040 | INFO     | architecture information:
[2025-06-04 21:43:18] 2025-06-04 19:13:19,041 | INFO     | executing command: cat /etc/os-release
[2025-06-04 21:43:18] 2025-06-04 19:13:19,298 | INFO     | cat /etc/os-release:
[2025-06-04 21:43:18] NAME="CentOS Linux"
[2025-06-04 21:43:18] VERSION="7 (Core)"
[2025-06-04 21:43:18] ID="centos"
[2025-06-04 21:43:18] ID_LIKE="rhel fedora"
[2025-06-04 21:43:18] VERSION_ID="7"
[2025-06-04 21:43:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 21:43:18] ANSI_COLOR="0;31"
[2025-06-04 21:43:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 21:43:18] HOME_URL="https://www.centos.org/"
[2025-06-04 21:43:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 21:43:18] 
[2025-06-04 21:43:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 21:43:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 21:43:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 21:43:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 21:43:18] 
[2025-06-04 21:43:18] 2025-06-04 19:13:19,298 | INFO     | **************************************
[2025-06-04 21:43:18] 2025-06-04 19:13:19,801 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-04 21:43:18] 2025-06-04 19:13:20,016 | INFO     | sufficient remaining disk space (496865640448 B)
[2025-06-04 21:43:18] 2025-06-04 19:13:20,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 21:43:18] 2025-06-04 19:13:20,017 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 21:43:18] 2025-06-04 19:13:20,017 | INFO     | update_server=False
[2025-06-04 21:43:18] 2025-06-04 19:13:20,017 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 21:43:18] 2025-06-04 19:13:20,439 | INFO     | all payload control threads have been joined
[2025-06-04 21:43:18] 2025-06-04 19:13:20,448 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 21:43:18] 2025-06-04 19:13:20,449 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 21:43:18] 2025-06-04 19:13:20,449 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 21:43:18] 2025-06-04 19:13:20,470 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 21:43:18] 2025-06-04 19:13:20,470 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 21:43:18] 2025-06-04 19:13:20,470 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:43:18] 2025-06-04 19:13:20,471 | INFO     | will abort loop
[2025-06-04 21:43:18] 2025-06-04 19:13:20,552 | INFO     | all data control threads have been joined
[2025-06-04 21:43:18] 2025-06-04 19:13:20,932 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 21:43:18] 2025-06-04 19:13:21,023 | INFO     | [job] retrieve thread has finished
[2025-06-04 21:43:18] 2025-06-04 19:13:21,187 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 21:43:18] 2025-06-04 19:13:21,188 | INFO     | [payload] failed_post thread has finished
[2025-06-04 21:43:18] 2025-06-04 19:13:21,283 | INFO     | [data] copytool_in thread has finished
[2025-06-04 21:43:18] 2025-06-04 19:13:21,316 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 21:43:18] 2025-06-04 19:13:21,445 | INFO     | [payload] control thread has finished
[2025-06-04 21:43:18] 2025-06-04 19:13:21,476 | INFO     | [job] job monitor thread has finished
[2025-06-04 21:43:18] 2025-06-04 19:13:21,558 | INFO     | [data] control thread has finished
[2025-06-04 21:43:18] 2025-06-04 19:13:21,639 | INFO     | all job control threads have been joined
[2025-06-04 21:43:18] 2025-06-04 19:13:21,797 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 21:43:18] 2025-06-04 19:13:21,867 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:43:18] 2025-06-04 19:13:22,165 | INFO     | [payload] validate_post thread has finished
[2025-06-04 21:43:18] 2025-06-04 19:13:22,465 | INFO     | [job] validate thread has finished
[2025-06-04 21:43:18] 2025-06-04 19:13:22,505 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 21:43:18] 2025-06-04 19:13:22,645 | INFO     | [job] control thread has finished
[2025-06-04 21:43:18] 2025-06-04 19:13:22,873 | INFO     | [job] queue monitor thread has finished
[2025-06-04 21:43:18] 2025-06-04 19:13:22,939 | INFO     | [data] copytool_out thread has finished
[2025-06-04 21:43:18] 2025-06-04 19:13:23,194 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 21:43:18] 2025-06-04 19:13:27,203 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 21:43:18] 2025-06-04 19:13:27,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140298694506304)>', '<ExcThread(monitor, started 140298101442304)>']
[2025-06-04 21:43:18] 2025-06-04 19:13:28,495 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 21:43:18] 2025-06-04 19:13:28,495 | INFO     | [monitor] control thread has ended
[2025-06-04 21:43:18] 2025-06-04 19:13:32,524 | INFO     | all workflow threads have been joined
[2025-06-04 21:43:18] 2025-06-04 19:13:32,524 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 21:43:18] 2025-06-04 19:13:32,525 | INFO     | traces error code: 0
[2025-06-04 21:43:18] 2025-06-04 19:13:32,525 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 21:43:18] 2025-06-04 19:13:32,907 [wrapper] ==== pilot stdout END ====
[2025-06-04 21:43:18] 2025-06-04 19:13:33,002 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 21:43:18] 2025-06-04 19:13:33,062 [wrapper] pilotpid: 3268
[2025-06-04 21:43:18] 2025-06-04 19:13:33,114 [wrapper] Pilot exit status: 0
[2025-06-04 21:43:18] 2025-06-04 19:13:33,511 [wrapper] pandaids: 6678285533
[2025-06-04 21:43:18] 2025-06-04 19:13:34,465 [wrapper] cleanup supervisor_pilot 28436 3269
[2025-06-04 21:43:18] 2025-06-04 19:13:34,526 [wrapper] Test setup, not cleaning
[2025-06-04 21:43:18] 2025-06-04 19:13:34,648 [wrapper] apfmon messages muted
[2025-06-04 21:43:18] 2025-06-04 19:13:34,728 [wrapper] ==== wrapper stdout END ====
[2025-06-04 21:43:18] 2025-06-04 19:13:34,811 [wrapper] ==== wrapper stderr END ====
[2025-06-04 21:43:18]  *** Error codes and diagnostics ***
[2025-06-04 21:43:18]     "exeErrorCode": 0,
[2025-06-04 21:43:18]     "exeErrorDiag": "",
[2025-06-04 21:43:18]     "pilotErrorCode": 0,
[2025-06-04 21:43:18]     "pilotErrorDiag": "",
[2025-06-04 21:43:18]  *** Listing of results directory ***
[2025-06-04 21:43:18] total 388560
[2025-06-04 21:43:18] -rw-r--r--. 1 boinc boinc    495897 Jun  4 04:41 pilot3.tar.gz
[2025-06-04 21:43:18] -rw-r--r--. 1 boinc boinc      5111 Jun  4 04:48 queuedata.json
[2025-06-04 21:43:18] -rwx------. 1 boinc boinc     37140 Jun  4 04:49 runpilot2-wrapper.sh
[2025-06-04 21:43:18] -rw-r--r--. 1 boinc boinc       100 Jun  4 17:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 21:43:18] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 17:36 run_atlas
[2025-06-04 21:43:18] -rw-r--r--. 1 boinc boinc       105 Jun  4 17:36 job.xml
[2025-06-04 21:43:18] -rw-r--r--. 2 boinc boinc 213508480 Jun  4 17:36 EVNT.45006593._002033.pool.root.1
[2025-06-04 21:43:18] -rw-r--r--. 2 boinc boinc     15093 Jun  4 17:36 start_atlas.sh
[2025-06-04 21:43:18] drwxrwx--x. 2 boinc boinc        68 Jun  4 17:36 shared
[2025-06-04 21:43:18] -rw-r--r--. 2 boinc boinc    508880 Jun  4 17:36 input.tar.gz
[2025-06-04 21:43:18] -rw-r--r--. 1 boinc boinc      6392 Jun  4 17:36 init_data.xml
[2025-06-04 21:43:18] -rw-r--r--. 1 boinc boinc         0 Jun  4 17:37 boinc_lockfile
[2025-06-04 21:43:18] -rw-r--r--. 1 boinc boinc      2525 Jun  4 17:37 pandaJob.out
[2025-06-04 21:43:18] -rw-------. 1 boinc boinc    990989 Jun  4 17:40 agis_schedconf.cvmfs.json
[2025-06-04 21:43:18] drwx------. 4 boinc boinc      4096 Jun  4 17:40 pilot3
[2025-06-04 21:43:18] -rw-------. 1 boinc boinc 177626155 Jun  4 21:10 HITS.45006595._050742.pool.root.1
[2025-06-04 21:43:18] -rw-r--r--. 1 boinc boinc       531 Jun  4 21:10 boinc_task_state.xml
[2025-06-04 21:43:18] -rw-------. 1 boinc boinc      1014 Jun  4 21:11 memory_monitor_summary.json
[2025-06-04 21:43:18] -rw-------. 1 boinc boinc   1598969 Jun  4 21:11 agis_ddmendpoints.agis.ALL.json
[2025-06-04 21:43:18] -rw-------. 1 boinc boinc    373307 Jun  4 21:11 log.45006595._050742.job.log.tgz.1
[2025-06-04 21:43:18] -rw-------. 1 boinc boinc        95 Jun  4 21:12 pilot_heartbeat.json
[2025-06-04 21:43:18] -rw-------. 1 boinc boinc      7686 Jun  4 21:13 heartbeat.json
[2025-06-04 21:43:18] -rw-------. 1 boinc boinc      4602 Jun  4 21:13 pilotlog.txt
[2025-06-04 21:43:18] -rw-------. 1 boinc boinc   1090497 Jun  4 21:13 log.45006595._050742.job.log.1
[2025-06-04 21:43:18] -rw-------. 1 boinc boinc       357 Jun  4 21:13 output.list
[2025-06-04 21:43:18] -rw-r--r--. 1 boinc boinc       620 Jun  4 21:13 runtime_log
[2025-06-04 21:43:18] -rw-------. 1 boinc boinc   1484800 Jun  4 21:13 result.tar.gz
[2025-06-04 21:43:18] -rw-r--r--. 1 boinc boinc      8659 Jun  4 21:13 runtime_log.err
[2025-06-04 21:43:18] -rw-------. 1 boinc boinc       656 Jun  4 21:13 buLMDmTNtg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9umKDmnjHEin.diag
[2025-06-04 21:43:18] -rw-r--r--. 1 boinc boinc      8192 Jun  4 21:43 boinc_mmap_file
[2025-06-04 21:43:18] -rw-r--r--. 1 boinc boinc        28 Jun  4 21:43 wrapper_checkpoint.txt
[2025-06-04 21:43:18] -rw-r--r--. 1 boinc boinc     20470 Jun  4 21:43 stderr.txt
[2025-06-04 21:43:18] HITS file was successfully produced:
[2025-06-04 21:43:18] -rw-------. 1 boinc boinc 177626155 Jun  4 21:10 shared/HITS.pool.root.1
[2025-06-04 21:43:18]  *** Contents of shared directory: ***
[2025-06-04 21:43:18] total 383940
[2025-06-04 21:43:18] -rw-r--r--. 2 boinc boinc 213508480 Jun  4 17:36 ATLAS.root_0
[2025-06-04 21:43:18] -rw-r--r--. 2 boinc boinc     15093 Jun  4 17:36 start_atlas.sh
[2025-06-04 21:43:18] -rw-r--r--. 2 boinc boinc    508880 Jun  4 17:36 input.tar.gz
[2025-06-04 21:43:18] -rw-------. 1 boinc boinc 177626155 Jun  4 21:10 HITS.pool.root.1
[2025-06-04 21:43:18] -rw-------. 1 boinc boinc   1484800 Jun  4 21:13 result.tar.gz
21:43:20 (30181): run_atlas exited; CPU time 45160.163958
21:43:20 (30181): called boinc_finish(0)

</stderr_txt>
]]>

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