Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:25:49 (3113981): wrapper (7.7.26015): starting
00:25:49 (3113981): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 00:25:49] Arguments: --nthreads 4
[2025-06-06 00:25:49] Threads: 4
[2025-06-06 00:25:49] Checking for CVMFS
[2025-06-06 00:25:49] No cvmfs_config command found, will try listing directly
[2025-06-06 00:25:49] CVMFS is ok
[2025-06-06 00:25:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 00:25:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 00:25:49] Further information can be found at the LHC@home message board.
[2025-06-06 00:25:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 00:25:49] Checking for apptainer binary...
[2025-06-06 00:25:49] which: no apptainer in ((null))
[2025-06-06 00:25:49] apptainer is not installed, using version from CVMFS
[2025-06-06 00:25:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 00:25:50] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot44/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2025-06-06 00:25:50] apptainer works
[2025-06-06 00:25:50] Set ATHENA_PROC_NUMBER=4
[2025-06-06 00:25:50] Set ATHENA_CORE_NUMBER=4
[2025-06-06 00:25:50] Starting ATLAS job with PandaID=6678212535
[2025-06-06 00:25:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot44/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 03:05:02]  *** The last 200 lines of the pilot log: ***
[2025-06-06 03:05:02] 2025-06-06 01:02:01,372 | INFO     | extracted standard info from prmon json
[2025-06-06 03:05:02] 2025-06-06 01:02:01,373 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 03:05:02] 2025-06-06 01:02:01,373 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 03:05:02] 2025-06-06 01:02:01,373 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 03:05:02] 2025-06-06 01:02:01,373 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 03:05:02] 2025-06-06 01:02:01,377 | INFO     | fitting pss+swap vs Time
[2025-06-06 03:05:02] 2025-06-06 01:02:01,378 | INFO     | sum of square deviations: 1110539892.0
[2025-06-06 03:05:02] 2025-06-06 01:02:01,379 | INFO     | sum of deviations: -880631807.0000076
[2025-06-06 03:05:02] 2025-06-06 01:02:01,379 | INFO     | mean x: 1749167024.0
[2025-06-06 03:05:02] 2025-06-06 01:02:01,379 | INFO     | mean y: 2351969.320261438
[2025-06-06 03:05:02] 2025-06-06 01:02:01,379 | INFO     | -- intersect: 1389399952.1854692
[2025-06-06 03:05:02] 2025-06-06 01:02:01,379 | INFO     | intersect: 1389399952.1854692
[2025-06-06 03:05:02] 2025-06-06 01:02:01,379 | INFO     | chi2: 1.55612105528105
[2025-06-06 03:05:02] 2025-06-06 01:02:01,380 | INFO     | sum of square deviations: 1005179777.0
[2025-06-06 03:05:02] 2025-06-06 01:02:01,381 | INFO     | sum of deviations: -560830858.5000035
[2025-06-06 03:05:02] 2025-06-06 01:02:01,381 | INFO     | mean x: 1749166871.5
[2025-06-06 03:05:02] 2025-06-06 01:02:01,381 | INFO     | mean y: 2352432.804054054
[2025-06-06 03:05:02] 2025-06-06 01:02:01,381 | INFO     | -- intersect: 978284082.6934949
[2025-06-06 03:05:02] 2025-06-06 01:02:01,381 | INFO     | intersect: 978284082.6934949
[2025-06-06 03:05:02] 2025-06-06 01:02:01,382 | INFO     | chi2: 1.5568935435371065
[2025-06-06 03:05:02] 2025-06-06 01:02:01,382 | INFO     | current chi2=1.5568935435371065 (change=-0.049641912718477475 %)
[2025-06-06 03:05:02] 2025-06-06 01:02:01,382 | INFO     | right removable region: 147
[2025-06-06 03:05:02] 2025-06-06 01:02:01,382 | INFO     | sum of square deviations: 1005179777.0
[2025-06-06 03:05:02] 2025-06-06 01:02:01,383 | INFO     | sum of deviations: -22245385541.499996
[2025-06-06 03:05:02] 2025-06-06 01:02:01,383 | INFO     | mean x: 1749167176.5
[2025-06-06 03:05:02] 2025-06-06 01:02:01,383 | INFO     | mean y: 2382394.358108108
[2025-06-06 03:05:02] 2025-06-06 01:02:01,383 | INFO     | -- intersect: 38712769439.65923
[2025-06-06 03:05:02] 2025-06-06 01:02:01,383 | INFO     | intersect: 38712769439.65923
[2025-06-06 03:05:02] 2025-06-06 01:02:01,384 | INFO     | chi2: 0.05976477651332018
[2025-06-06 03:05:02] 2025-06-06 01:02:01,384 | INFO     | current chi2=0.05976477651332018 (change=96.15937485644224 %)
[2025-06-06 03:05:02] 2025-06-06 01:02:01,384 | INFO     | sum of square deviations: 906703512.0
[2025-06-06 03:05:02] 2025-06-06 01:02:01,385 | INFO     | sum of deviations: -20532971246.0
[2025-06-06 03:05:02] 2025-06-06 01:02:01,385 | INFO     | mean x: 1749167329.0
[2025-06-06 03:05:02] 2025-06-06 01:02:01,385 | INFO     | mean y: 2379713.888111888
[2025-06-06 03:05:02] 2025-06-06 01:02:01,385 | INFO     | -- intersect: 39613566827.93959
[2025-06-06 03:05:02] 2025-06-06 01:02:01,385 | INFO     | intersect: 39613566827.93959
[2025-06-06 03:05:02] 2025-06-06 01:02:01,385 | INFO     | chi2: 0.057001884489866615
[2025-06-06 03:05:02] 2025-06-06 01:02:01,385 | INFO     | current chi2=0.057001884489866615 (change=4.622943788366342 %)
[2025-06-06 03:05:02] 2025-06-06 01:02:01,385 | INFO     | left removable region: 20
[2025-06-06 03:05:02] 2025-06-06 01:02:01,386 | INFO     | sum of square deviations: 635130048.0
[2025-06-06 03:05:02] 2025-06-06 01:02:01,386 | INFO     | sum of deviations: -14026412101.999998
[2025-06-06 03:05:02] 2025-06-06 01:02:01,386 | INFO     | mean x: 1749167451.0
[2025-06-06 03:05:02] 2025-06-06 01:02:01,387 | INFO     | mean y: 2371305.181102362
[2025-06-06 03:05:02] 2025-06-06 01:02:01,387 | INFO     | -- intersect: 38631536435.04579
[2025-06-06 03:05:02] 2025-06-06 01:02:01,387 | INFO     | intersect: 38631536435.04579
[2025-06-06 03:05:02] 2025-06-06 01:02:01,387 | INFO     | chi2: 0.0503982562606535
[2025-06-06 03:05:02] 2025-06-06 01:02:01,387 | INFO     | -- intersect: 38631536435.04579
[2025-06-06 03:05:02] 2025-06-06 01:02:01,387 | INFO     | current memory leak: -22.08 B/s (using 127 data points, chi2=0.05)
[2025-06-06 03:05:02] 2025-06-06 01:02:01,388 | INFO     | sufficient remaining disk space (642739339264 B)
[2025-06-06 03:05:02] 2025-06-06 01:02:01,388 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-06 03:05:02] 2025-06-06 01:02:01,389 | INFO     | ..............................
[2025-06-06 03:05:02] 2025-06-06 01:02:01,389 | INFO     | . Timing measurements:
[2025-06-06 03:05:02] 2025-06-06 01:02:01,389 | INFO     | . get job = 0 s
[2025-06-06 03:05:02] 2025-06-06 01:02:01,389 | INFO     | . initial setup = 1 s
[2025-06-06 03:05:02] 2025-06-06 01:02:01,389 | INFO     | . payload setup = 7 s
[2025-06-06 03:05:02] 2025-06-06 01:02:01,389 | INFO     | . stage-in = 0 s
[2025-06-06 03:05:02] 2025-06-06 01:02:01,389 | INFO     | . payload execution = 9329 s
[2025-06-06 03:05:02] 2025-06-06 01:02:01,389 | INFO     | . stage-out = 0 s
[2025-06-06 03:05:02] 2025-06-06 01:02:01,389 | INFO     | . log creation = 0 s
[2025-06-06 03:05:02] 2025-06-06 01:02:01,389 | INFO     | ..............................
[2025-06-06 03:05:02] 2025-06-06 01:02:01,391 | INFO     | size of work directory /scratch/boinc/var/slot44/slots/0/PanDA_Pilot-6678212535: 2843677 B (within 2537553920 B limit)
[2025-06-06 03:05:02] 2025-06-06 01:02:01,391 | INFO     | pfn file=/scratch/boinc/var/slot44/slots/0/PanDA_Pilot-6678212535/HITS.45006595._048394.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-06 03:05:02] 2025-06-06 01:02:01,391 | INFO     | total size of present files: 0 B (workdir size: 2843677 B)
[2025-06-06 03:05:02] 2025-06-06 01:02:01,391 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot44/slots/0/PanDA_Pilot-6678212535/HITS.45006595._048394.pool.root.1 since it does not exist
[2025-06-06 03:05:02] 2025-06-06 01:02:01,493 | INFO     | 
[2025-06-06 03:05:02] 2025-06-06 01:02:01,493 | INFO     | job summary report
[2025-06-06 03:05:02] 2025-06-06 01:02:01,493 | INFO     | --------------------------------------------------
[2025-06-06 03:05:02] 2025-06-06 01:02:01,493 | INFO     | PanDA job id: 6678212535
[2025-06-06 03:05:02] 2025-06-06 01:02:01,493 | INFO     | task id: 45006595
[2025-06-06 03:05:02] 2025-06-06 01:02:01,494 | INFO     | errors: (none)
[2025-06-06 03:05:02] 2025-06-06 01:02:01,494 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 03:05:02] 2025-06-06 01:02:01,494 | INFO     | pilot state: finished 
[2025-06-06 03:05:02] 2025-06-06 01:02:01,494 | INFO     | transexitcode: 0
[2025-06-06 03:05:02] 2025-06-06 01:02:01,494 | INFO     | exeerrorcode: 0
[2025-06-06 03:05:02] 2025-06-06 01:02:01,494 | INFO     | exeerrordiag: 
[2025-06-06 03:05:02] 2025-06-06 01:02:01,494 | INFO     | exitcode: 0
[2025-06-06 03:05:02] 2025-06-06 01:02:01,494 | INFO     | exitmsg: OK
[2025-06-06 03:05:02] 2025-06-06 01:02:01,494 | INFO     | cpuconsumptiontime: 35890 s
[2025-06-06 03:05:02] 2025-06-06 01:02:01,494 | INFO     | nevents: 400
[2025-06-06 03:05:02] 2025-06-06 01:02:01,494 | INFO     | neventsw: 0
[2025-06-06 03:05:02] 2025-06-06 01:02:01,494 | INFO     | pid: 3126853
[2025-06-06 03:05:02] 2025-06-06 01:02:01,495 | INFO     | pgrp: 3126853
[2025-06-06 03:05:02] 2025-06-06 01:02:01,495 | INFO     | corecount: 4
[2025-06-06 03:05:02] 2025-06-06 01:02:01,495 | INFO     | event service: False
[2025-06-06 03:05:02] 2025-06-06 01:02:01,495 | INFO     | sizes: {0: 2397353, 5: 2397559, 11: 2397615, 9340: 2425708, 9341: 2434727, 9346: 2434869}
[2025-06-06 03:05:02] 2025-06-06 01:02:01,495 | INFO     | --------------------------------------------------
[2025-06-06 03:05:02] 2025-06-06 01:02:01,495 | INFO     | 
[2025-06-06 03:05:02] 2025-06-06 01:02:01,495 | INFO     | executing command: ls -lF /scratch/boinc/var/slot44/slots/0
[2025-06-06 03:05:02] 2025-06-06 01:02:01,517 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,518 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,518 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,518 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,518 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,518 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,518 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,519 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,519 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,519 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,519 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,519 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,519 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,519 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,519 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,519 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,519 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,519 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 03:05:02] 2025-06-06 01:02:01,520 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,520 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 03:05:02] 2025-06-06 01:02:01,520 | INFO     | job 6678212535 has completed (purged errors)
[2025-06-06 03:05:02] 2025-06-06 01:02:01,520 | INFO     | overall cleanup function is called
[2025-06-06 03:05:02] 2025-06-06 01:02:01,850 | INFO     | number of running child processes to parent process 3126853: 1
[2025-06-06 03:05:02] 2025-06-06 01:02:01,850 | INFO     | maximum number of monitored processes: 6
[2025-06-06 03:05:02] 2025-06-06 01:02:01,850 | INFO     | aborting job monitoring since job object (job id=6678212535) has expired
[2025-06-06 03:05:02] 2025-06-06 01:02:02,529 | INFO     | --- collectZombieJob: --- 10, [3126853]
[2025-06-06 03:05:02] 2025-06-06 01:02:02,530 | INFO     | zombie collector waiting for pid 3126853
[2025-06-06 03:05:02] 2025-06-06 01:02:02,530 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 03:05:02] 2025-06-06 01:02:02,530 | INFO     | collected zombie processes
[2025-06-06 03:05:02] 2025-06-06 01:02:02,530 | INFO     | will attempt to kill all subprocesses of pid=3126853
[2025-06-06 03:05:02] 2025-06-06 01:02:02,867 | INFO     | process IDs to be killed: [3126853] (in reverse order)
[2025-06-06 03:05:02] 2025-06-06 01:02:02,980 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 03:05:02] 2025-06-06 01:02:02,981 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 03:05:02] 2025-06-06 01:02:02,992 | INFO     | did not find any defunct processes belonging to 3126853
[2025-06-06 03:05:02] 2025-06-06 01:02:03,003 | INFO     | did not find any defunct processes belonging to 3126853
[2025-06-06 03:05:02] 2025-06-06 01:02:03,003 | INFO     | ready for new job
[2025-06-06 03:05:02] 2025-06-06 01:02:03,003 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 03:05:02] 2025-06-06 01:02:03,005 | INFO     | **************************************
[2025-06-06 03:05:02] 2025-06-06 01:02:03,005 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 03:05:02] 2025-06-06 01:02:03,005 | INFO     | **************************************
[2025-06-06 03:05:02] 2025-06-06 01:02:03,005 | INFO     | 
[2025-06-06 03:05:02] 2025-06-06 01:02:03,009 | INFO     | architecture information:
[2025-06-06 03:05:02] 2025-06-06 01:02:03,009 | INFO     | executing command: cat /etc/os-release
[2025-06-06 03:05:02] 2025-06-06 01:02:03,025 | INFO     | cat /etc/os-release:
[2025-06-06 03:05:02] NAME="CentOS Linux"
[2025-06-06 03:05:02] VERSION="7 (Core)"
[2025-06-06 03:05:02] ID="centos"
[2025-06-06 03:05:02] ID_LIKE="rhel fedora"
[2025-06-06 03:05:02] VERSION_ID="7"
[2025-06-06 03:05:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 03:05:02] ANSI_COLOR="0;31"
[2025-06-06 03:05:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 03:05:02] HOME_URL="https://www.centos.org/"
[2025-06-06 03:05:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 03:05:02] 
[2025-06-06 03:05:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 03:05:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 03:05:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 03:05:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 03:05:02] 
[2025-06-06 03:05:02] 2025-06-06 01:02:03,025 | INFO     | **************************************
[2025-06-06 03:05:02] 2025-06-06 01:02:03,529 | INFO     | executing command: df -mP /scratch/boinc/var/slot44/slots/0
[2025-06-06 03:05:02] 2025-06-06 01:02:03,546 | INFO     | sufficient remaining disk space (642742484992 B)
[2025-06-06 03:05:02] 2025-06-06 01:02:03,547 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 03:05:02] 2025-06-06 01:02:03,547 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 03:05:02] 2025-06-06 01:02:03,547 | INFO     | update_server=False
[2025-06-06 03:05:02] 2025-06-06 01:02:03,547 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 03:05:02] 2025-06-06 01:02:03,548 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 03:05:02] 2025-06-06 01:02:03,548 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 03:05:02] 2025-06-06 01:02:03,548 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 03:05:02] 2025-06-06 01:02:03,549 | INFO     | aborting loop
[2025-06-06 03:05:02] 2025-06-06 01:02:03,549 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 03:05:02] 2025-06-06 01:02:03,550 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 03:05:02] 2025-06-06 01:02:03,550 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 03:05:02] 2025-06-06 01:02:03,879 | INFO     | all data control threads have been joined
[2025-06-06 03:05:02] 2025-06-06 01:02:04,137 | INFO     | all payload control threads have been joined
[2025-06-06 03:05:02] 2025-06-06 01:02:04,553 | INFO     | [job] retrieve thread has finished
[2025-06-06 03:05:02] 2025-06-06 01:02:04,555 | INFO     | [job] job monitor thread has finished
[2025-06-06 03:05:02] 2025-06-06 01:02:04,566 | INFO     | [payload] failed_post thread has finished
[2025-06-06 03:05:02] 2025-06-06 01:02:04,792 | INFO     | all job control threads have been joined
[2025-06-06 03:05:02] 2025-06-06 01:02:04,885 | INFO     | [data] control thread has finished
[2025-06-06 03:05:02] 2025-06-06 01:02:04,895 | INFO     | [job] validate thread has finished
[2025-06-06 03:05:02] 2025-06-06 01:02:04,901 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 03:05:02] 2025-06-06 01:02:05,005 | INFO     | [payload] validate_post thread has finished
[2025-06-06 03:05:02] 2025-06-06 01:02:05,065 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 03:05:02] 2025-06-06 01:02:05,142 | INFO     | [payload] control thread has finished
[2025-06-06 03:05:02] 2025-06-06 01:02:05,269 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 03:05:02] 2025-06-06 01:02:05,322 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 03:05:02] 2025-06-06 01:02:05,640 | INFO     | [data] copytool_in thread has finished
[2025-06-06 03:05:02] 2025-06-06 01:02:05,797 | INFO     | [job] control thread has finished
[2025-06-06 03:05:02] 2025-06-06 01:02:05,835 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 03:05:02] 2025-06-06 01:02:06,504 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 03:05:02] 2025-06-06 01:02:06,907 | INFO     | [data] copytool_out thread has finished
[2025-06-06 03:05:02] 2025-06-06 01:02:07,509 | INFO     | [job] queue monitor thread has finished
[2025-06-06 03:05:02] 2025-06-06 01:02:07,553 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 03:05:02] 2025-06-06 01:02:07,861 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22384697374528)>', '<ExcThread(monitor, started 22384448845568)>']
[2025-06-06 03:05:02] 2025-06-06 01:02:08,575 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 03:05:02] 2025-06-06 01:02:08,576 | INFO     | [monitor] control thread has ended
[2025-06-06 03:05:02] 2025-06-06 01:02:12,886 | INFO     | all workflow threads have been joined
[2025-06-06 03:05:02] 2025-06-06 01:02:12,887 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 03:05:02] 2025-06-06 01:02:12,887 | INFO     | traces error code: 0
[2025-06-06 03:05:02] 2025-06-06 01:02:12,887 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 03:05:02] 2025-06-06 01:02:13,073 [wrapper] ==== pilot stdout END ====
[2025-06-06 03:05:02] 2025-06-06 01:02:13,076 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 03:05:02] 2025-06-06 01:02:13,079 [wrapper] pilotpid: 3117669
[2025-06-06 03:05:02] 2025-06-06 01:02:13,082 [wrapper] Pilot exit status: 0
[2025-06-06 03:05:02] 2025-06-06 01:02:13,093 [wrapper] pandaids: 6678212535
[2025-06-06 03:05:02] 2025-06-06 01:02:13,171 [wrapper] cleanup supervisor_pilot 3353489 3117670
[2025-06-06 03:05:02] 2025-06-06 01:02:13,174 [wrapper] Test setup, not cleaning
[2025-06-06 03:05:02] 2025-06-06 01:02:13,177 [wrapper] apfmon messages muted
[2025-06-06 03:05:02] 2025-06-06 01:02:13,180 [wrapper] ==== wrapper stdout END ====
[2025-06-06 03:05:02] 2025-06-06 01:02:13,182 [wrapper] ==== wrapper stderr END ====
[2025-06-06 03:05:02]  *** Error codes and diagnostics ***
[2025-06-06 03:05:02]     "exeErrorCode": 0,
[2025-06-06 03:05:02]     "exeErrorDiag": "",
[2025-06-06 03:05:02]     "pilotErrorCode": 0,
[2025-06-06 03:05:02]     "pilotErrorDiag": "",
[2025-06-06 03:05:02]  *** Listing of results directory ***
[2025-06-06 03:05:02] total 396236
[2025-06-06 03:05:02] -rw-r--r-- 1 boinc boinc    495897 Jun  4 01:42 pilot3.tar.gz
[2025-06-06 03:05:02] -rwx------ 1 boinc boinc     37140 Jun  4 01:46 runpilot2-wrapper.sh
[2025-06-06 03:05:02] -rw-r--r-- 1 boinc boinc      5111 Jun  4 01:46 queuedata.json
[2025-06-06 03:05:02] -rw-r--r-- 1 boinc boinc       100 Jun  6 00:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 03:05:02] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 00:25 run_atlas
[2025-06-06 03:05:02] -rw-r--r-- 1 boinc boinc       105 Jun  6 00:25 job.xml
[2025-06-06 03:05:02] -rw-r--r-- 1 boinc boinc      6633 Jun  6 00:25 init_data.xml
[2025-06-06 03:05:02] -rw-r--r-- 2 boinc boinc 213962897 Jun  6 00:25 EVNT.45006593._001941.pool.root.1
[2025-06-06 03:05:02] -rw-r--r-- 2 boinc boinc     15093 Jun  6 00:25 start_atlas.sh
[2025-06-06 03:05:02] drwxrwx--x 2 boinc boinc      4096 Jun  6 00:25 shared
[2025-06-06 03:05:02] -rw-r--r-- 2 boinc boinc    508881 Jun  6 00:25 input.tar.gz
[2025-06-06 03:05:02] -rw-r--r-- 1 boinc boinc         0 Jun  6 00:25 boinc_lockfile
[2025-06-06 03:05:02] -rw-r--r-- 1 boinc boinc      2525 Jun  6 00:25 pandaJob.out
[2025-06-06 03:05:02] -rw------- 1 boinc boinc    987721 Jun  6 00:25 agis_schedconf.cvmfs.json
[2025-06-06 03:05:02] -rw------- 1 boinc boinc   1598969 Jun  6 00:25 agis_ddmendpoints.agis.ALL.json
[2025-06-06 03:05:02] drwx------ 4 boinc boinc      4096 Jun  6 00:26 pilot3
[2025-06-06 03:05:02] -rw------- 1 boinc boinc        95 Jun  6 03:01 pilot_heartbeat.json
[2025-06-06 03:05:02] -rw------- 1 boinc boinc 185580504 Jun  6 03:01 HITS.45006595._048394.pool.root.1
[2025-06-06 03:05:02] -rw-r--r-- 1 boinc boinc       529 Jun  6 03:01 boinc_task_state.xml
[2025-06-06 03:05:02] -rw------- 1 boinc boinc      1033 Jun  6 03:01 memory_monitor_summary.json
[2025-06-06 03:05:02] -rw------- 1 boinc boinc    293017 Jun  6 03:01 log.45006595._048394.job.log.tgz.1
[2025-06-06 03:05:02] -rw------- 1 boinc boinc      7723 Jun  6 03:02 heartbeat.json
[2025-06-06 03:05:02] -rw------- 1 boinc boinc      4486 Jun  6 03:02 pilotlog.txt
[2025-06-06 03:05:02] -rw------- 1 boinc boinc    889740 Jun  6 03:02 log.45006595._048394.job.log.1
[2025-06-06 03:05:02] -rw------- 1 boinc boinc       357 Jun  6 03:02 output.list
[2025-06-06 03:05:02] -rw-r--r-- 1 boinc boinc       620 Jun  6 03:02 runtime_log
[2025-06-06 03:05:02] -rw------- 1 boinc boinc   1198080 Jun  6 03:02 result.tar.gz
[2025-06-06 03:05:02] -rw-r--r-- 1 boinc boinc      9025 Jun  6 03:02 runtime_log.err
[2025-06-06 03:05:02] -rw------- 1 boinc boinc       662 Jun  6 03:02 9zLMDm2Vqg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmGKaKDmQs1ADn.diag
[2025-06-06 03:05:02] -rw-r--r-- 1 boinc boinc        26 Jun  6 03:04 wrapper_checkpoint.txt
[2025-06-06 03:05:02] -rw-r--r-- 1 boinc boinc      8192 Jun  6 03:05 boinc_mmap_file
[2025-06-06 03:05:02] -rw-r--r-- 1 boinc boinc     21044 Jun  6 03:05 stderr.txt
[2025-06-06 03:05:02] HITS file was successfully produced:
[2025-06-06 03:05:02] -rw------- 1 boinc boinc 185580504 Jun  6 03:01 shared/HITS.pool.root.1
[2025-06-06 03:05:02]  *** Contents of shared directory: ***
[2025-06-06 03:05:02] total 391880
[2025-06-06 03:05:02] -rw-r--r-- 2 boinc boinc 213962897 Jun  6 00:25 ATLAS.root_0
[2025-06-06 03:05:02] -rw-r--r-- 2 boinc boinc     15093 Jun  6 00:25 start_atlas.sh
[2025-06-06 03:05:02] -rw-r--r-- 2 boinc boinc    508881 Jun  6 00:25 input.tar.gz
[2025-06-06 03:05:02] -rw------- 1 boinc boinc 185580504 Jun  6 03:01 HITS.pool.root.1
[2025-06-06 03:05:02] -rw------- 1 boinc boinc   1198080 Jun  6 03:02 result.tar.gz
03:05:04 (3113981): run_atlas exited; CPU time 36250.199798
03:05:04 (3113981): called boinc_finish(0)

</stderr_txt>
]]>

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