Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
02:05:26 (731919): wrapper (7.7.26015): starting
02:05:26 (731919): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 02:05:26] Arguments: --nthreads 12
[2025-06-06 02:05:26] Threads: 12
[2025-06-06 02:05:26] Checking for CVMFS
[2025-06-06 02:05:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 02:05:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 02:05:26] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 02:05:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 02:05:27] 2.12.7.0 4529 1726 48524 146838 1 186 2393450 4096001 264 130560 0 2035249 99.993 399112 137 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-06 02:05:27] CVMFS is ok
[2025-06-06 02:05:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 02:05:27] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-06 02:05:27] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-06 02:05:27] Further information can be found at the LHC@home message board.
[2025-06-06 02:05:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 02:05:27] Checking for apptainer binary...
[2025-06-06 02:05:27] apptainer is not installed, using version from CVMFS
[2025-06-06 02:05:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 02:05:27] martinpcalt
[2025-06-06 02:05:27] apptainer works
[2025-06-06 02:05:27] Set ATHENA_PROC_NUMBER=12
[2025-06-06 02:05:27] Set ATHENA_CORE_NUMBER=12
[2025-06-06 02:05:27] Starting ATLAS job with PandaID=6678247953
[2025-06-06 02:05:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 04:19:13]  *** The last 200 lines of the pilot log: ***
[2025-06-06 04:19:13] 2025-06-06 04:18:51,984 | INFO     | .. there are 2 such processes running
[2025-06-06 04:19:13] 2025-06-06 04:18:52,206 | INFO     | monitor loop #598: job 0:6678247953 is in state 'finished'
[2025-06-06 04:19:13] 2025-06-06 04:18:52,206 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 04:19:13] 2025-06-06 04:18:52,985 | INFO     | 8003s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-06 04:19:13] 2025-06-06 04:18:54,708 | INFO     | monitor loop #599: job 0:6678247953 is in state 'finished'
[2025-06-06 04:19:13] 2025-06-06 04:18:54,708 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 04:19:13] 2025-06-06 04:18:57,211 | INFO     | monitor loop #600: job 0:6678247953 is in state 'finished'
[2025-06-06 04:19:13] 2025-06-06 04:18:57,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 04:19:13] 2025-06-06 04:18:59,484 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 04:19:13] 2025-06-06 04:18:59,484 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6678247953/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 04:19:13] 2025-06-06 04:18:59,484 | INFO     | extracted standard info from prmon json
[2025-06-06 04:19:13] 2025-06-06 04:18:59,485 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 04:19:13] 2025-06-06 04:18:59,485 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 04:19:13] 2025-06-06 04:18:59,485 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 04:19:13] 2025-06-06 04:18:59,485 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 04:19:13] 2025-06-06 04:18:59,487 | INFO     | fitting pss+swap vs Time
[2025-06-06 04:19:13] 2025-06-06 04:18:59,487 | INFO     | sum of square deviations: 681213810.4923089
[2025-06-06 04:19:13] 2025-06-06 04:18:59,487 | INFO     | sum of deviations: 17635617617.200005
[2025-06-06 04:19:13] 2025-06-06 04:18:59,487 | INFO     | mean x: 1749179481.5076923
[2025-06-06 04:19:13] 2025-06-06 04:18:59,488 | INFO     | mean y: 2638030.8
[2025-06-06 04:19:13] 2025-06-06 04:18:59,488 | INFO     | -- intersect: -45281030627.39745
[2025-06-06 04:19:13] 2025-06-06 04:18:59,488 | INFO     | intersect: -45281030627.39745
[2025-06-06 04:19:13] 2025-06-06 04:18:59,488 | INFO     | chi2: 1.1889373026095165
[2025-06-06 04:19:13] 2025-06-06 04:18:59,488 | INFO     | sum of square deviations: 605594092.9920013
[2025-06-06 04:19:13] 2025-06-06 04:18:59,489 | INFO     | sum of deviations: 16589438226.720016
[2025-06-06 04:19:13] 2025-06-06 04:18:59,489 | INFO     | mean x: 1749179329.008
[2025-06-06 04:19:13] 2025-06-06 04:18:59,489 | INFO     | mean y: 2635945.28
[2025-06-06 04:19:13] 2025-06-06 04:18:59,489 | INFO     | -- intersect: -47913786559.21932
[2025-06-06 04:19:13] 2025-06-06 04:18:59,489 | INFO     | intersect: -47913786559.21932
[2025-06-06 04:19:13] 2025-06-06 04:18:59,489 | INFO     | chi2: 1.1891760373952316
[2025-06-06 04:19:13] 2025-06-06 04:18:59,489 | INFO     | current chi2=1.1891760373952316 (change=-0.020079678313662107 %)
[2025-06-06 04:19:13] 2025-06-06 04:18:59,489 | INFO     | right removable region: 124
[2025-06-06 04:19:13] 2025-06-06 04:18:59,489 | INFO     | sum of square deviations: 605593482.9920013
[2025-06-06 04:19:13] 2025-06-06 04:18:59,490 | INFO     | sum of deviations: 1548064097.1120005
[2025-06-06 04:19:13] 2025-06-06 04:18:59,490 | INFO     | mean x: 1749179634.008
[2025-06-06 04:19:13] 2025-06-06 04:18:59,490 | INFO     | mean y: 2669724.888
[2025-06-06 04:19:13] 2025-06-06 04:18:59,490 | INFO     | -- intersect: -4468716224.361158
[2025-06-06 04:19:13] 2025-06-06 04:18:59,490 | INFO     | intersect: -4468716224.361158
[2025-06-06 04:19:13] 2025-06-06 04:18:59,490 | INFO     | chi2: 0.004327741518504784
[2025-06-06 04:19:13] 2025-06-06 04:18:59,490 | INFO     | current chi2=0.004327741518504784 (change=99.63599918103283 %)
[2025-06-06 04:19:13] 2025-06-06 04:18:59,490 | INFO     | sum of square deviations: 535787217.9916659
[2025-06-06 04:19:13] 2025-06-06 04:18:59,491 | INFO     | sum of deviations: 1781754183.0416665
[2025-06-06 04:19:13] 2025-06-06 04:18:59,491 | INFO     | mean x: 1749179786.5083334
[2025-06-06 04:19:13] 2025-06-06 04:18:59,491 | INFO     | mean y: 2669205.4583333335
[2025-06-06 04:19:13] 2025-06-06 04:18:59,491 | INFO     | -- intersect: -5814207899.571132
[2025-06-06 04:19:13] 2025-06-06 04:18:59,491 | INFO     | intersect: -5814207899.571132
[2025-06-06 04:19:13] 2025-06-06 04:18:59,491 | INFO     | chi2: 0.003864118948250454
[2025-06-06 04:19:13] 2025-06-06 04:18:59,491 | INFO     | current chi2=0.003864118948250454 (change=10.712806397330988 %)
[2025-06-06 04:19:13] 2025-06-06 04:18:59,491 | INFO     | left removable region: 20
[2025-06-06 04:19:13] 2025-06-06 04:18:59,491 | INFO     | sum of square deviations: 348769513.9903839
[2025-06-06 04:19:13] 2025-06-06 04:18:59,492 | INFO     | sum of deviations: 849085372.9807692
[2025-06-06 04:19:13] 2025-06-06 04:18:59,492 | INFO     | mean x: 1749179908.5096154
[2025-06-06 04:19:13] 2025-06-06 04:18:59,492 | INFO     | mean y: 2669762.019230769
[2025-06-06 04:19:13] 2025-06-06 04:18:59,492 | INFO     | -- intersect: -4255738772.702367
[2025-06-06 04:19:13] 2025-06-06 04:18:59,492 | INFO     | intersect: -4255738772.702367
[2025-06-06 04:19:13] 2025-06-06 04:18:59,492 | INFO     | chi2: 0.000751770581904559
[2025-06-06 04:19:13] 2025-06-06 04:18:59,492 | INFO     | -- intersect: -4255738772.702367
[2025-06-06 04:19:13] 2025-06-06 04:18:59,493 | INFO     | current memory leak: 2.43 B/s (using 104 data points, chi2=0.00)
[2025-06-06 04:19:13] 2025-06-06 04:18:59,493 | INFO     | ..............................
[2025-06-06 04:19:13] 2025-06-06 04:18:59,493 | INFO     | . Timing measurements:
[2025-06-06 04:19:13] 2025-06-06 04:18:59,493 | INFO     | . get job = 0 s
[2025-06-06 04:19:13] 2025-06-06 04:18:59,493 | INFO     | . initial setup = 1 s
[2025-06-06 04:19:13] 2025-06-06 04:18:59,493 | INFO     | . payload setup = 2 s
[2025-06-06 04:19:13] 2025-06-06 04:18:59,493 | INFO     | . stage-in = 0 s
[2025-06-06 04:19:13] 2025-06-06 04:18:59,493 | INFO     | . payload execution = 7927 s
[2025-06-06 04:19:13] 2025-06-06 04:18:59,493 | INFO     | . stage-out = 1 s
[2025-06-06 04:19:13] 2025-06-06 04:18:59,493 | INFO     | . log creation = 0 s
[2025-06-06 04:19:13] 2025-06-06 04:18:59,493 | INFO     | ..............................
[2025-06-06 04:19:13] 2025-06-06 04:18:59,953 | INFO     | 
[2025-06-06 04:19:13] 2025-06-06 04:18:59,953 | INFO     | job summary report
[2025-06-06 04:19:13] 2025-06-06 04:18:59,953 | INFO     | --------------------------------------------------
[2025-06-06 04:19:13] 2025-06-06 04:18:59,953 | INFO     | PanDA job id: 6678247953
[2025-06-06 04:19:13] 2025-06-06 04:18:59,953 | INFO     | task id: 45006595
[2025-06-06 04:19:13] 2025-06-06 04:18:59,953 | INFO     | errors: (none)
[2025-06-06 04:19:13] 2025-06-06 04:18:59,953 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 04:19:13] 2025-06-06 04:18:59,953 | INFO     | pilot state: finished 
[2025-06-06 04:19:13] 2025-06-06 04:18:59,954 | INFO     | transexitcode: 0
[2025-06-06 04:19:13] 2025-06-06 04:18:59,954 | INFO     | exeerrorcode: 0
[2025-06-06 04:19:13] 2025-06-06 04:18:59,954 | INFO     | exeerrordiag: 
[2025-06-06 04:19:13] 2025-06-06 04:18:59,954 | INFO     | exitcode: 0
[2025-06-06 04:19:13] 2025-06-06 04:18:59,954 | INFO     | exitmsg: OK
[2025-06-06 04:19:13] 2025-06-06 04:18:59,954 | INFO     | cpuconsumptiontime: 26799 s
[2025-06-06 04:19:13] 2025-06-06 04:18:59,954 | INFO     | nevents: 400
[2025-06-06 04:19:13] 2025-06-06 04:18:59,954 | INFO     | neventsw: 0
[2025-06-06 04:19:13] 2025-06-06 04:18:59,954 | INFO     | pid: 742071
[2025-06-06 04:19:13] 2025-06-06 04:18:59,954 | INFO     | pgrp: 742071
[2025-06-06 04:19:13] 2025-06-06 04:18:59,954 | INFO     | corecount: 12
[2025-06-06 04:19:13] 2025-06-06 04:18:59,954 | INFO     | event service: False
[2025-06-06 04:19:13] 2025-06-06 04:18:59,954 | INFO     | sizes: {0: 2397365, 1: 2397571, 11: 2397599, 7933: 2425211, 7936: 2434198, 7939: 2434254, 7996: 2434552}
[2025-06-06 04:19:13] 2025-06-06 04:18:59,954 | INFO     | --------------------------------------------------
[2025-06-06 04:19:13] 2025-06-06 04:18:59,954 | INFO     | 
[2025-06-06 04:19:13] 2025-06-06 04:18:59,954 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-06 04:19:13] 2025-06-06 04:18:59,963 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,964 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,964 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,964 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,964 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,964 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,964 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,964 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,964 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,964 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,964 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,964 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,964 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,964 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,965 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,965 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,965 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,965 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 04:19:13] 2025-06-06 04:18:59,965 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,965 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 04:19:13] 2025-06-06 04:18:59,965 | INFO     | job 6678247953 has completed (purged errors)
[2025-06-06 04:19:13] 2025-06-06 04:18:59,965 | INFO     | overall cleanup function is called
[2025-06-06 04:19:13] 2025-06-06 04:19:00,972 | INFO     | --- collectZombieJob: --- 10, [742071]
[2025-06-06 04:19:13] 2025-06-06 04:19:00,972 | INFO     | zombie collector waiting for pid 742071
[2025-06-06 04:19:13] 2025-06-06 04:19:00,972 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 04:19:13] 2025-06-06 04:19:00,972 | INFO     | collected zombie processes
[2025-06-06 04:19:13] 2025-06-06 04:19:00,972 | INFO     | will attempt to kill all subprocesses of pid=742071
[2025-06-06 04:19:13] 2025-06-06 04:19:01,023 | INFO     | process IDs to be killed: [742071] (in reverse order)
[2025-06-06 04:19:13] 2025-06-06 04:19:01,042 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 04:19:13] 2025-06-06 04:19:01,042 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 04:19:13] 2025-06-06 04:19:01,044 | INFO     | did not find any defunct processes belonging to 742071
[2025-06-06 04:19:13] 2025-06-06 04:19:01,045 | INFO     | did not find any defunct processes belonging to 742071
[2025-06-06 04:19:13] 2025-06-06 04:19:01,045 | INFO     | ready for new job
[2025-06-06 04:19:13] 2025-06-06 04:19:01,045 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 04:19:13] 2025-06-06 04:19:01,046 | INFO     | **************************************
[2025-06-06 04:19:13] 2025-06-06 04:19:01,046 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 04:19:13] 2025-06-06 04:19:01,046 | INFO     | **************************************
[2025-06-06 04:19:13] 2025-06-06 04:19:01,046 | INFO     | 
[2025-06-06 04:19:13] 2025-06-06 04:19:01,064 | INFO     | architecture information:
[2025-06-06 04:19:13] 2025-06-06 04:19:01,064 | INFO     | executing command: cat /etc/os-release
[2025-06-06 04:19:13] 2025-06-06 04:19:01,071 | INFO     | cat /etc/os-release:
[2025-06-06 04:19:13] NAME="CentOS Linux"
[2025-06-06 04:19:13] VERSION="7 (Core)"
[2025-06-06 04:19:13] ID="centos"
[2025-06-06 04:19:13] ID_LIKE="rhel fedora"
[2025-06-06 04:19:13] VERSION_ID="7"
[2025-06-06 04:19:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 04:19:13] ANSI_COLOR="0;31"
[2025-06-06 04:19:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 04:19:13] HOME_URL="https://www.centos.org/"
[2025-06-06 04:19:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 04:19:13] 
[2025-06-06 04:19:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 04:19:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 04:19:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 04:19:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 04:19:13] 
[2025-06-06 04:19:13] 2025-06-06 04:19:01,071 | INFO     | **************************************
[2025-06-06 04:19:13] 2025-06-06 04:19:01,572 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-06 04:19:13] 2025-06-06 04:19:01,578 | INFO     | sufficient remaining disk space (276938358784 B)
[2025-06-06 04:19:13] 2025-06-06 04:19:01,579 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 04:19:13] 2025-06-06 04:19:01,579 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 04:19:13] 2025-06-06 04:19:01,579 | INFO     | update_server=False
[2025-06-06 04:19:13] 2025-06-06 04:19:01,579 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 04:19:13] 2025-06-06 04:19:01,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 04:19:13] 2025-06-06 04:19:01,579 | INFO     | aborting loop
[2025-06-06 04:19:13] 2025-06-06 04:19:01,608 | INFO     | all job control threads have been joined
[2025-06-06 04:19:13] 2025-06-06 04:19:01,896 | INFO     | all data control threads have been joined
[2025-06-06 04:19:13] 2025-06-06 04:19:01,979 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 04:19:13] 2025-06-06 04:19:02,005 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 04:19:13] 2025-06-06 04:19:02,005 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 04:19:13] 2025-06-06 04:19:02,005 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 04:19:13] 2025-06-06 04:19:02,583 | INFO     | [job] retrieve thread has finished
[2025-06-06 04:19:13] 2025-06-06 04:19:02,584 | INFO     | [job] job monitor thread has finished
[2025-06-06 04:19:13] 2025-06-06 04:19:02,613 | INFO     | [job] control thread has finished
[2025-06-06 04:19:13] 2025-06-06 04:19:02,760 | INFO     | all payload control threads have been joined
[2025-06-06 04:19:13] 2025-06-06 04:19:02,801 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 04:19:13] 2025-06-06 04:19:02,900 | INFO     | [data] control thread has finished
[2025-06-06 04:19:13] 2025-06-06 04:19:02,984 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 04:19:13] 2025-06-06 04:19:03,423 | INFO     | [payload] failed_post thread has finished
[2025-06-06 04:19:13] 2025-06-06 04:19:03,484 | INFO     | [payload] validate_post thread has finished
[2025-06-06 04:19:13] 2025-06-06 04:19:03,639 | INFO     | [job] validate thread has finished
[2025-06-06 04:19:13] 2025-06-06 04:19:03,673 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 04:19:13] 2025-06-06 04:19:03,766 | INFO     | [payload] control thread has finished
[2025-06-06 04:19:13] 2025-06-06 04:19:03,820 | INFO     | [data] copytool_in thread has finished
[2025-06-06 04:19:13] 2025-06-06 04:19:03,984 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 04:19:13] 2025-06-06 04:19:04,038 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 04:19:13] 2025-06-06 04:19:04,564 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 04:19:13] 2025-06-06 04:19:04,807 | INFO     | [data] copytool_out thread has finished
[2025-06-06 04:19:13] 2025-06-06 04:19:05,569 | INFO     | [job] queue monitor thread has finished
[2025-06-06 04:19:13] 2025-06-06 04:19:05,984 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 04:19:13] 2025-06-06 04:19:07,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139773717538624)>', '<ExcThread(monitor, started 139773066868480)>']
[2025-06-06 04:19:13] 2025-06-06 04:19:08,028 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 04:19:13] 2025-06-06 04:19:08,028 | INFO     | [monitor] control thread has ended
[2025-06-06 04:19:13] 2025-06-06 04:19:12,423 | INFO     | all workflow threads have been joined
[2025-06-06 04:19:13] 2025-06-06 04:19:12,423 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 04:19:13] 2025-06-06 04:19:12,423 | INFO     | traces error code: 0
[2025-06-06 04:19:13] 2025-06-06 04:19:12,423 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 04:19:13] 2025-06-06 04:19:12,673 [wrapper] ==== pilot stdout END ====
[2025-06-06 04:19:13] 2025-06-06 04:19:12,674 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 04:19:13] 2025-06-06 04:19:12,675 [wrapper] pilotpid: 735562
[2025-06-06 04:19:13] 2025-06-06 04:19:12,676 [wrapper] Pilot exit status: 0
[2025-06-06 04:19:13] 2025-06-06 04:19:12,700 [wrapper] pandaids: 6678247953
[2025-06-06 04:19:13] 2025-06-06 04:19:12,707 [wrapper] cleanup supervisor_pilot  762245 735563
[2025-06-06 04:19:13] 2025-06-06 04:19:12,708 [wrapper] Test setup, not cleaning
[2025-06-06 04:19:13] 2025-06-06 04:19:12,709 [wrapper] apfmon messages muted
[2025-06-06 04:19:13] 2025-06-06 04:19:12,710 [wrapper] ==== wrapper stdout END ====
[2025-06-06 04:19:13] 2025-06-06 04:19:12,711 [wrapper] ==== wrapper stderr END ====
[2025-06-06 04:19:13]  *** Error codes and diagnostics ***
[2025-06-06 04:19:13]     "exeErrorCode": 0,
[2025-06-06 04:19:13]     "exeErrorDiag": "",
[2025-06-06 04:19:13]     "pilotErrorCode": 0,
[2025-06-06 04:19:13]     "pilotErrorDiag": "",
[2025-06-06 04:19:13]  *** Listing of results directory ***
[2025-06-06 04:19:13] total 383856
[2025-06-06 04:19:13] -rw-r--r-- 1 boinc boinc    495897 Jun  4 01:59 pilot3.tar.gz
[2025-06-06 04:19:13] -rwx------ 1 boinc boinc     37140 Jun  4 02:21 runpilot2-wrapper.sh
[2025-06-06 04:19:13] -rw-r--r-- 1 boinc boinc      5111 Jun  4 02:21 queuedata.json
[2025-06-06 04:19:13] -rw-rw-r-- 1 boinc boinc       100 Jun  6 02:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 04:19:13] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 02:05 run_atlas
[2025-06-06 04:19:13] -rw-rw-r-- 1 boinc boinc       105 Jun  6 02:05 job.xml
[2025-06-06 04:19:13] -rw-rw-r-- 1 boinc boinc      9334 Jun  6 02:05 init_data.xml
[2025-06-06 04:19:13] -rw-r--r-- 2 boinc boinc 215847938 Jun  6 02:05 EVNT.45006593._002030.pool.root.1
[2025-06-06 04:19:13] drwxrwx--x 2 boinc boinc      4096 Jun  6 02:05 shared
[2025-06-06 04:19:13] -rw-r--r-- 2 boinc boinc    508878 Jun  6 02:05 input.tar.gz
[2025-06-06 04:19:13] -rw-r--r-- 2 boinc boinc     15093 Jun  6 02:05 start_atlas.sh
[2025-06-06 04:19:13] -rw-rw-r-- 1 boinc boinc         0 Jun  6 02:05 boinc_lockfile
[2025-06-06 04:19:13] -rw-rw-r-- 1 boinc boinc      2525 Jun  6 02:05 pandaJob.out
[2025-06-06 04:19:13] -rw------- 1 boinc boinc    987721 Jun  6 02:05 agis_schedconf.cvmfs.json
[2025-06-06 04:19:13] -rw------- 1 boinc boinc   1598969 Jun  6 02:05 agis_ddmendpoints.agis.ALL.json
[2025-06-06 04:19:13] drwx------ 4 boinc boinc      4096 Jun  6 02:05 pilot3
[2025-06-06 04:19:13] -rw------- 1 boinc boinc 171049733 Jun  6 04:16 HITS.45006595._050630.pool.root.1
[2025-06-06 04:19:13] -rw-rw-r-- 1 boinc boinc       529 Jun  6 04:17 boinc_task_state.xml
[2025-06-06 04:19:13] -rw------- 1 boinc boinc      1028 Jun  6 04:17 memory_monitor_summary.json
[2025-06-06 04:19:13] -rw------- 1 boinc boinc    387556 Jun  6 04:17 log.45006595._050630.job.log.tgz.1
[2025-06-06 04:19:13] -rw------- 1 boinc boinc        95 Jun  6 04:18 pilot_heartbeat.json
[2025-06-06 04:19:13] -rw------- 1 boinc boinc      7686 Jun  6 04:18 heartbeat.json
[2025-06-06 04:19:13] -rw-rw-r-- 1 boinc boinc      8192 Jun  6 04:19 boinc_mmap_file
[2025-06-06 04:19:13] -rw-rw-r-- 1 boinc boinc        27 Jun  6 04:19 wrapper_checkpoint.txt
[2025-06-06 04:19:13] -rw------- 1 boinc boinc      4377 Jun  6 04:19 pilotlog.txt
[2025-06-06 04:19:13] -rw------- 1 boinc boinc    777768 Jun  6 04:19 log.45006595._050630.job.log.1
[2025-06-06 04:19:13] -rw------- 1 boinc boinc       357 Jun  6 04:19 output.list
[2025-06-06 04:19:13] -rw-rw-r-- 1 boinc boinc       620 Jun  6 04:19 runtime_log
[2025-06-06 04:19:13] -rw------- 1 boinc boinc   1187840 Jun  6 04:19 result.tar.gz
[2025-06-06 04:19:13] -rw-rw-r-- 1 boinc boinc      8978 Jun  6 04:19 runtime_log.err
[2025-06-06 04:19:13] -rw------- 1 boinc boinc       658 Jun  6 04:19 IzTKDmQwsg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6tmKDmoGGdvm.diag
[2025-06-06 04:19:13] -rw-rw-r-- 1 boinc boinc     21266 Jun  6 04:19 stderr.txt
[2025-06-06 04:19:13] HITS file was successfully produced:
[2025-06-06 04:19:13] -rw------- 1 boinc boinc 171049733 Jun  6 04:16 shared/HITS.pool.root.1
[2025-06-06 04:19:13]  *** Contents of shared directory: ***
[2025-06-06 04:19:13] total 379516
[2025-06-06 04:19:13] -rw-r--r-- 2 boinc boinc 215847938 Jun  6 02:05 ATLAS.root_0
[2025-06-06 04:19:13] -rw-r--r-- 2 boinc boinc    508878 Jun  6 02:05 input.tar.gz
[2025-06-06 04:19:13] -rw-r--r-- 2 boinc boinc     15093 Jun  6 02:05 start_atlas.sh
[2025-06-06 04:19:13] -rw------- 1 boinc boinc 171049733 Jun  6 04:16 HITS.pool.root.1
[2025-06-06 04:19:13] -rw------- 1 boinc boinc   1187840 Jun  6 04:19 result.tar.gz
04:19:15 (731919): run_atlas exited; CPU time 26830.666874
04:19:15 (731919): called boinc_finish(0)

</stderr_txt>
]]>

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