Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:25:02 (2845191): wrapper (7.7.26015): starting
08:25:02 (2845191): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 08:25:02] Arguments: --nthreads 4
[2025-06-06 08:25:02] Threads: 4
[2025-06-06 08:25:02] Checking for CVMFS
[2025-06-06 08:25:02] No cvmfs_config command found, will try listing directly
[2025-06-06 08:25:02] CVMFS is ok
[2025-06-06 08:25:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 08:25:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 08:25:02] Further information can be found at the LHC@home message board.
[2025-06-06 08:25:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 08:25:02] Checking for apptainer binary...
[2025-06-06 08:25:02] which: no apptainer in ((null))
[2025-06-06 08:25:02] apptainer is not installed, using version from CVMFS
[2025-06-06 08:25:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 08:25:03] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-06-06 08:25:03] apptainer works
[2025-06-06 08:25:03] Set ATHENA_PROC_NUMBER=4
[2025-06-06 08:25:03] Set ATHENA_CORE_NUMBER=4
[2025-06-06 08:25:03] Starting ATLAS job with PandaID=6678247870
[2025-06-06 08:25:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot80/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 10:02:18]  *** The last 200 lines of the pilot log: ***
[2025-06-06 10:02:18]  is_tar=False
[2025-06-06 10:02:18]  lfn=log.45006595._050547.job.log.tgz.1
[2025-06-06 10:02:18]  mtime=0
[2025-06-06 10:02:18]  protocol_id=None
[2025-06-06 10:02:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 10:02:18]  replicas=None
[2025-06-06 10:02:18]  scope=mc23_13p6TeV
[2025-06-06 10:02:18]  status=None
[2025-06-06 10:02:18]  status_code=0
[2025-06-06 10:02:18]  storage_token=
[2025-06-06 10:02:18]  surl=/scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6678247870/log.45006595._050547.job.log.tgz.1
[2025-06-06 10:02:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/91/log.45006595._050547.job.log.tgz.1
[2025-06-06 10:02:18]  workdir=None
[2025-06-06 10:02:18] ]
[2025-06-06 10:02:18] 2025-06-06 08:00:40,555 | INFO     | transferring file log.45006595._050547.job.log.tgz.1 from /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6678247870/log.45006595._050547.job.log.tgz.1 to /scratch/b
[2025-06-06 10:02:18] 2025-06-06 08:00:40,555 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6678247870/log.45006595._050547.job.log.tgz.1 /scratch/boinc/var/slot80/slots/0/lo
[2025-06-06 10:02:18] 2025-06-06 08:00:40,572 | INFO     | adding to output.list: log.45006595._050547.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/91/log.45006595._050547.job.log.tg
[2025-06-06 10:02:18] 2025-06-06 08:00:40,573 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 10:02:18] 2025-06-06 08:00:40,573 | INFO     | summary of transferred files:
[2025-06-06 10:02:18] 2025-06-06 08:00:40,573 | INFO     |  -- lfn=log.45006595._050547.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 10:02:18] 2025-06-06 08:00:40,573 | INFO     | stage-out finished correctly
[2025-06-06 10:02:18] 2025-06-06 08:00:41,795 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 10:02:18] 2025-06-06 08:00:41,861 | INFO     | job 6678247870 has state=finished
[2025-06-06 10:02:18] 2025-06-06 08:00:41,861 | INFO     | preparing for final server update for job 6678247870 in state='finished'
[2025-06-06 10:02:18] 2025-06-06 08:00:41,861 | INFO     | this job has now completed (state=finished)
[2025-06-06 10:02:18] 2025-06-06 08:00:41,861 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 10:02:18] 2025-06-06 08:00:41,861 | INFO     | log transfer has been attempted: DONE
[2025-06-06 10:02:18] 2025-06-06 08:00:41,862 | INFO     | job 6678247870 has finished - writing final server update
[2025-06-06 10:02:18] 2025-06-06 08:00:41,862 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2743184/.job.ad'
[2025-06-06 10:02:18] 2025-06-06 08:00:41,862 | INFO     | total number of processed events: 400 (read)
[2025-06-06 10:02:18] 2025-06-06 08:00:41,868 | INFO     | executing command: lscpu
[2025-06-06 10:02:18] 2025-06-06 08:00:41,945 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 10:02:18] 2025-06-06 08:00:42,733 | WARNING  | process 2856879 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 10:02:18] 2025-06-06 08:00:42,733 | INFO     | using path: /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6678247870/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 10:02:18] 2025-06-06 08:00:43,083 | INFO     | number of running child processes to parent process 2856879: 1
[2025-06-06 10:02:18] 2025-06-06 08:00:43,083 | INFO     | maximum number of monitored processes: 6
[2025-06-06 10:02:18] 2025-06-06 08:00:45,587 | INFO     | monitor loop #410: job 0:6678247870 is in state 'finished'
[2025-06-06 10:02:18] 2025-06-06 08:00:45,587 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 10:02:18] 2025-06-06 08:00:45,875 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 10:02:18] 2025-06-06 08:00:45,876 | INFO     | using path: /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6678247870/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 10:02:18] 2025-06-06 08:00:45,876 | INFO     | extracted standard info from prmon json
[2025-06-06 10:02:18] 2025-06-06 08:00:45,876 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 10:02:18] 2025-06-06 08:00:45,876 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 10:02:18] 2025-06-06 08:00:45,876 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 10:02:18] 2025-06-06 08:00:45,877 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 10:02:18] 2025-06-06 08:00:45,878 | INFO     | fitting pss+swap vs Time
[2025-06-06 10:02:18] 2025-06-06 08:00:45,878 | INFO     | sum of square deviations: 204163828.0
[2025-06-06 10:02:18] 2025-06-06 08:00:45,878 | INFO     | sum of deviations: -9249170811.0
[2025-06-06 10:02:18] 2025-06-06 08:00:45,878 | INFO     | mean x: 1749194066.0
[2025-06-06 10:02:18] 2025-06-06 08:00:45,879 | INFO     | mean y: 2418899.620689655
[2025-06-06 10:02:18] 2025-06-06 08:00:45,879 | INFO     | -- intersect: 79245617151.2797
[2025-06-06 10:02:18] 2025-06-06 08:00:45,879 | INFO     | intersect: 79245617151.2797
[2025-06-06 10:02:18] 2025-06-06 08:00:45,879 | INFO     | chi2: 0.018260099453611414
[2025-06-06 10:02:18] 2025-06-06 08:00:45,879 | INFO     | -- intersect: 79245617151.2797
[2025-06-06 10:02:18] 2025-06-06 08:00:45,879 | INFO     | current memory leak: -45.30 B/s (using 87 data points, chi2=0.02)
[2025-06-06 10:02:18] 2025-06-06 08:00:45,879 | INFO     | ..............................
[2025-06-06 10:02:18] 2025-06-06 08:00:45,879 | INFO     | . Timing measurements:
[2025-06-06 10:02:18] 2025-06-06 08:00:45,879 | INFO     | . get job = 0 s
[2025-06-06 10:02:18] 2025-06-06 08:00:45,879 | INFO     | . initial setup = 1 s
[2025-06-06 10:02:18] 2025-06-06 08:00:45,879 | INFO     | . payload setup = 6 s
[2025-06-06 10:02:18] 2025-06-06 08:00:45,879 | INFO     | . stage-in = 0 s
[2025-06-06 10:02:18] 2025-06-06 08:00:45,879 | INFO     | . payload execution = 5703 s
[2025-06-06 10:02:18] 2025-06-06 08:00:45,879 | INFO     | . stage-out = 0 s
[2025-06-06 10:02:18] 2025-06-06 08:00:45,879 | INFO     | . log creation = 0 s
[2025-06-06 10:02:18] 2025-06-06 08:00:45,880 | INFO     | ..............................
[2025-06-06 10:02:18] 2025-06-06 08:00:45,940 | INFO     | 
[2025-06-06 10:02:18] 2025-06-06 08:00:45,940 | INFO     | job summary report
[2025-06-06 10:02:18] 2025-06-06 08:00:45,940 | INFO     | --------------------------------------------------
[2025-06-06 10:02:18] 2025-06-06 08:00:45,940 | INFO     | PanDA job id: 6678247870
[2025-06-06 10:02:18] 2025-06-06 08:00:45,940 | INFO     | task id: 45006595
[2025-06-06 10:02:18] 2025-06-06 08:00:45,940 | INFO     | errors: (none)
[2025-06-06 10:02:18] 2025-06-06 08:00:45,940 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 10:02:18] 2025-06-06 08:00:45,940 | INFO     | pilot state: finished 
[2025-06-06 10:02:18] 2025-06-06 08:00:45,940 | INFO     | transexitcode: 0
[2025-06-06 10:02:18] 2025-06-06 08:00:45,940 | INFO     | exeerrorcode: 0
[2025-06-06 10:02:18] 2025-06-06 08:00:45,941 | INFO     | exeerrordiag: 
[2025-06-06 10:02:18] 2025-06-06 08:00:45,941 | INFO     | exitcode: 0
[2025-06-06 10:02:18] 2025-06-06 08:00:45,941 | INFO     | exitmsg: OK
[2025-06-06 10:02:18] 2025-06-06 08:00:45,941 | INFO     | cpuconsumptiontime: 21683 s
[2025-06-06 10:02:18] 2025-06-06 08:00:45,941 | INFO     | nevents: 400
[2025-06-06 10:02:18] 2025-06-06 08:00:45,941 | INFO     | neventsw: 0
[2025-06-06 10:02:18] 2025-06-06 08:00:45,941 | INFO     | pid: 2856879
[2025-06-06 10:02:18] 2025-06-06 08:00:45,941 | INFO     | pgrp: 2856879
[2025-06-06 10:02:18] 2025-06-06 08:00:45,941 | INFO     | corecount: 4
[2025-06-06 10:02:18] 2025-06-06 08:00:45,941 | INFO     | event service: False
[2025-06-06 10:02:18] 2025-06-06 08:00:45,941 | INFO     | sizes: {0: 2397347, 5: 2397553, 11: 2397609, 5713: 2424172, 5714: 2433135, 5715: 2433191, 5719: 2433489}
[2025-06-06 10:02:18] 2025-06-06 08:00:45,941 | INFO     | --------------------------------------------------
[2025-06-06 10:02:18] 2025-06-06 08:00:45,941 | INFO     | 
[2025-06-06 10:02:18] 2025-06-06 08:00:45,941 | INFO     | executing command: ls -lF /scratch/boinc/var/slot80/slots/0
[2025-06-06 10:02:18] 2025-06-06 08:00:45,964 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,965 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,965 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,965 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,965 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,965 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,965 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,965 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,965 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,965 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,965 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,965 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,965 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,965 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,965 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,965 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,966 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,966 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 10:02:18] 2025-06-06 08:00:45,966 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,966 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 10:02:18] 2025-06-06 08:00:45,966 | INFO     | job 6678247870 has completed (purged errors)
[2025-06-06 10:02:18] 2025-06-06 08:00:45,966 | INFO     | overall cleanup function is called
[2025-06-06 10:02:18] 2025-06-06 08:00:46,974 | INFO     | --- collectZombieJob: --- 10, [2856879]
[2025-06-06 10:02:18] 2025-06-06 08:00:46,974 | INFO     | zombie collector waiting for pid 2856879
[2025-06-06 10:02:18] 2025-06-06 08:00:46,974 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 10:02:18] 2025-06-06 08:00:46,975 | INFO     | collected zombie processes
[2025-06-06 10:02:18] 2025-06-06 08:00:46,975 | INFO     | will attempt to kill all subprocesses of pid=2856879
[2025-06-06 10:02:18] 2025-06-06 08:00:47,350 | INFO     | process IDs to be killed: [2856879] (in reverse order)
[2025-06-06 10:02:18] 2025-06-06 08:00:47,476 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 10:02:18] 2025-06-06 08:00:47,476 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 10:02:18] 2025-06-06 08:00:47,494 | INFO     | did not find any defunct processes belonging to 2856879
[2025-06-06 10:02:18] 2025-06-06 08:00:47,506 | INFO     | did not find any defunct processes belonging to 2856879
[2025-06-06 10:02:18] 2025-06-06 08:00:47,506 | INFO     | ready for new job
[2025-06-06 10:02:18] 2025-06-06 08:00:47,506 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 10:02:18] 2025-06-06 08:00:47,507 | INFO     | **************************************
[2025-06-06 10:02:18] 2025-06-06 08:00:47,508 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 10:02:18] 2025-06-06 08:00:47,508 | INFO     | **************************************
[2025-06-06 10:02:18] 2025-06-06 08:00:47,508 | INFO     | 
[2025-06-06 10:02:18] 2025-06-06 08:00:47,513 | INFO     | architecture information:
[2025-06-06 10:02:18] 2025-06-06 08:00:47,513 | INFO     | executing command: cat /etc/os-release
[2025-06-06 10:02:18] 2025-06-06 08:00:47,528 | INFO     | cat /etc/os-release:
[2025-06-06 10:02:18] NAME="CentOS Linux"
[2025-06-06 10:02:18] VERSION="7 (Core)"
[2025-06-06 10:02:18] ID="centos"
[2025-06-06 10:02:18] ID_LIKE="rhel fedora"
[2025-06-06 10:02:18] VERSION_ID="7"
[2025-06-06 10:02:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 10:02:18] ANSI_COLOR="0;31"
[2025-06-06 10:02:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 10:02:18] HOME_URL="https://www.centos.org/"
[2025-06-06 10:02:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 10:02:18] 
[2025-06-06 10:02:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 10:02:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 10:02:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 10:02:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 10:02:18] 
[2025-06-06 10:02:18] 2025-06-06 08:00:47,528 | INFO     | **************************************
[2025-06-06 10:02:18] 2025-06-06 08:00:48,031 | INFO     | executing command: df -mP /scratch/boinc/var/slot80/slots/0
[2025-06-06 10:02:18] 2025-06-06 08:00:48,048 | INFO     | sufficient remaining disk space (3322684637184 B)
[2025-06-06 10:02:18] 2025-06-06 08:00:48,048 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 10:02:18] 2025-06-06 08:00:48,048 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 10:02:18] 2025-06-06 08:00:48,048 | INFO     | update_server=False
[2025-06-06 10:02:18] 2025-06-06 08:00:48,048 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 10:02:18] 2025-06-06 08:00:48,049 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 10:02:18] 2025-06-06 08:00:48,049 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 10:02:18] 2025-06-06 08:00:48,050 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 10:02:18] 2025-06-06 08:00:48,050 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 10:02:18] 2025-06-06 08:00:48,050 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 10:02:18] 2025-06-06 08:00:48,090 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 10:02:18] 2025-06-06 08:00:48,091 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 10:02:18] 2025-06-06 08:00:48,091 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 10:02:18] 2025-06-06 08:00:48,091 | INFO     | will abort loop
[2025-06-06 10:02:18] 2025-06-06 08:00:48,273 | INFO     | all data control threads have been joined
[2025-06-06 10:02:18] 2025-06-06 08:00:48,643 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 10:02:18] 2025-06-06 08:00:49,054 | INFO     | [job] retrieve thread has finished
[2025-06-06 10:02:18] 2025-06-06 08:00:49,096 | INFO     | [job] job monitor thread has finished
[2025-06-06 10:02:18] 2025-06-06 08:00:49,101 | INFO     | [payload] validate_post thread has finished
[2025-06-06 10:02:18] 2025-06-06 08:00:49,279 | INFO     | [data] control thread has finished
[2025-06-06 10:02:18] 2025-06-06 08:00:49,318 | INFO     | all payload control threads have been joined
[2025-06-06 10:02:18] 2025-06-06 08:00:49,400 | INFO     | all job control threads have been joined
[2025-06-06 10:02:18] 2025-06-06 08:00:49,978 | INFO     | [payload] failed_post thread has finished
[2025-06-06 10:02:18] 2025-06-06 08:00:50,026 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 10:02:18] 2025-06-06 08:00:50,042 | INFO     | [data] copytool_in thread has finished
[2025-06-06 10:02:18] 2025-06-06 08:00:50,085 | INFO     | [job] validate thread has finished
[2025-06-06 10:02:18] 2025-06-06 08:00:50,192 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 10:02:18] 2025-06-06 08:00:50,209 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 10:02:18] 2025-06-06 08:00:50,323 | INFO     | [payload] control thread has finished
[2025-06-06 10:02:18] 2025-06-06 08:00:50,405 | INFO     | [job] control thread has finished
[2025-06-06 10:02:18] 2025-06-06 08:00:50,499 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 10:02:18] 2025-06-06 08:00:50,649 | INFO     | [data] copytool_out thread has finished
[2025-06-06 10:02:18] 2025-06-06 08:00:50,947 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 10:02:18] 2025-06-06 08:00:51,953 | INFO     | [job] queue monitor thread has finished
[2025-06-06 10:02:18] 2025-06-06 08:00:52,050 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 10:02:18] 2025-06-06 08:00:53,957 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23087263151936)>', '<ExcThread(monitor, started 23087024142080)>']
[2025-06-06 10:02:18] 2025-06-06 08:00:54,081 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 10:02:18] 2025-06-06 08:00:54,081 | INFO     | [monitor] control thread has ended
[2025-06-06 10:02:18] 2025-06-06 08:00:58,985 | INFO     | all workflow threads have been joined
[2025-06-06 10:02:18] 2025-06-06 08:00:58,986 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 10:02:18] 2025-06-06 08:00:58,986 | INFO     | traces error code: 0
[2025-06-06 10:02:18] 2025-06-06 08:00:58,986 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 10:02:18] 2025-06-06 08:00:59,103 [wrapper] ==== pilot stdout END ====
[2025-06-06 10:02:18] 2025-06-06 08:00:59,106 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 10:02:18] 2025-06-06 08:00:59,111 [wrapper] pilotpid: 2849141
[2025-06-06 10:02:18] 2025-06-06 08:00:59,114 [wrapper] Pilot exit status: 0
[2025-06-06 10:02:18] 2025-06-06 08:00:59,123 [wrapper] pandaids: 6678247870
[2025-06-06 10:02:18] 2025-06-06 08:00:59,211 [wrapper] cleanup supervisor_pilot 2976018 2849142
[2025-06-06 10:02:18] 2025-06-06 08:00:59,214 [wrapper] Test setup, not cleaning
[2025-06-06 10:02:18] 2025-06-06 08:00:59,217 [wrapper] apfmon messages muted
[2025-06-06 10:02:18] 2025-06-06 08:00:59,219 [wrapper] ==== wrapper stdout END ====
[2025-06-06 10:02:18] 2025-06-06 08:00:59,222 [wrapper] ==== wrapper stderr END ====
[2025-06-06 10:02:18]  *** Error codes and diagnostics ***
[2025-06-06 10:02:18]     "exeErrorCode": 0,
[2025-06-06 10:02:18]     "exeErrorDiag": "",
[2025-06-06 10:02:18]     "pilotErrorCode": 0,
[2025-06-06 10:02:18]     "pilotErrorDiag": "",
[2025-06-06 10:02:18]  *** Listing of results directory ***
[2025-06-06 10:02:18] total 391176
[2025-06-06 10:02:18] -rw-r--r-- 1 boinc boinc    495897 Jun  4 03:59 pilot3.tar.gz
[2025-06-06 10:02:18] -rwx------ 1 boinc boinc     37140 Jun  4 04:16 runpilot2-wrapper.sh
[2025-06-06 10:02:18] -rw-r--r-- 1 boinc boinc      5111 Jun  4 04:16 queuedata.json
[2025-06-06 10:02:18] -rw-r--r-- 1 boinc boinc       100 Jun  6 08:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 10:02:18] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 08:24 run_atlas
[2025-06-06 10:02:18] -rw-r--r-- 1 boinc boinc       105 Jun  6 08:24 job.xml
[2025-06-06 10:02:18] -rw-r--r-- 1 boinc boinc      6687 Jun  6 08:25 init_data.xml
[2025-06-06 10:02:18] -rw-r--r-- 2 boinc boinc 212698225 Jun  6 08:25 EVNT.45006593._002027.pool.root.1
[2025-06-06 10:02:18] -rw-r--r-- 2 boinc boinc     15093 Jun  6 08:25 start_atlas.sh
[2025-06-06 10:02:18] drwxrwx--x 2 boinc boinc      4096 Jun  6 08:25 shared
[2025-06-06 10:02:18] -rw-r--r-- 2 boinc boinc    508874 Jun  6 08:25 input.tar.gz
[2025-06-06 10:02:18] -rw-r--r-- 1 boinc boinc         0 Jun  6 08:25 boinc_lockfile
[2025-06-06 10:02:18] -rw-r--r-- 1 boinc boinc      2522 Jun  6 08:25 pandaJob.out
[2025-06-06 10:02:18] -rw------- 1 boinc boinc    988117 Jun  6 08:25 agis_schedconf.cvmfs.json
[2025-06-06 10:02:18] -rw------- 1 boinc boinc   1598969 Jun  6 08:25 agis_ddmendpoints.agis.ALL.json
[2025-06-06 10:02:18] drwx------ 4 boinc boinc      4096 Jun  6 08:25 pilot3
[2025-06-06 10:02:18] -rw------- 1 boinc boinc 182448550 Jun  6 10:00 HITS.45006595._050547.pool.root.1
[2025-06-06 10:02:18] -rw------- 1 boinc boinc        95 Jun  6 10:00 pilot_heartbeat.json
[2025-06-06 10:02:18] -rw-r--r-- 1 boinc boinc       529 Jun  6 10:00 boinc_task_state.xml
[2025-06-06 10:02:18] -rw------- 1 boinc boinc      1027 Jun  6 10:00 memory_monitor_summary.json
[2025-06-06 10:02:18] -rw------- 1 boinc boinc    239878 Jun  6 10:00 log.45006595._050547.job.log.tgz.1
[2025-06-06 10:02:18] -rw------- 1 boinc boinc      7697 Jun  6 10:00 heartbeat.json
[2025-06-06 10:02:18] -rw------- 1 boinc boinc      4673 Jun  6 10:00 pilotlog.txt
[2025-06-06 10:02:18] -rw------- 1 boinc boinc    547076 Jun  6 10:00 log.45006595._050547.job.log.1
[2025-06-06 10:02:18] -rw------- 1 boinc boinc       357 Jun  6 10:00 output.list
[2025-06-06 10:02:18] -rw-r--r-- 1 boinc boinc       620 Jun  6 10:00 runtime_log
[2025-06-06 10:02:18] -rw------- 1 boinc boinc    808960 Jun  6 10:00 result.tar.gz
[2025-06-06 10:02:18] -rw-r--r-- 1 boinc boinc      9025 Jun  6 10:00 runtime_log.err
[2025-06-06 10:02:18] -rw------- 1 boinc boinc       662 Jun  6 10:00 hkgMDmXrsg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmWXaKDm3Sqtsn.diag
[2025-06-06 10:02:18] -rw-r--r-- 1 boinc boinc        27 Jun  6 10:02 wrapper_checkpoint.txt
[2025-06-06 10:02:18] -rw-r--r-- 1 boinc boinc      8192 Jun  6 10:02 boinc_mmap_file
[2025-06-06 10:02:18] -rw-r--r-- 1 boinc boinc     21366 Jun  6 10:02 stderr.txt
[2025-06-06 10:02:18] HITS file was successfully produced:
[2025-06-06 10:02:18] -rw------- 1 boinc boinc 182448550 Jun  6 10:00 shared/HITS.pool.root.1
[2025-06-06 10:02:18]  *** Contents of shared directory: ***
[2025-06-06 10:02:18] total 387208
[2025-06-06 10:02:18] -rw-r--r-- 2 boinc boinc 212698225 Jun  6 08:25 ATLAS.root_0
[2025-06-06 10:02:18] -rw-r--r-- 2 boinc boinc     15093 Jun  6 08:25 start_atlas.sh
[2025-06-06 10:02:18] -rw-r--r-- 2 boinc boinc    508874 Jun  6 08:25 input.tar.gz
[2025-06-06 10:02:18] -rw------- 1 boinc boinc 182448550 Jun  6 10:00 HITS.pool.root.1
[2025-06-06 10:02:18] -rw------- 1 boinc boinc    808960 Jun  6 10:00 result.tar.gz
10:02:19 (2845191): run_atlas exited; CPU time 21934.586144
10:02:19 (2845191): called boinc_finish(0)

</stderr_txt>
]]>

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