Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:13:06 (3051474): wrapper (7.7.26015): starting
03:13:06 (3051474): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 03:13:06] Arguments: --nthreads 8
[2025-06-04 03:13:06] Threads: 8
[2025-06-04 03:13:06] Checking for CVMFS
[2025-06-04 03:13:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 03:13:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 03:13:06] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 03:13:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 03:13:06] 2.12.6.0 676006 23413 277832 146771 0 372 20410458 32503808 33267 16776704 0 305294327 99.696 222415994 36728 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 03:13:06] CVMFS is ok
[2025-06-04 03:13:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 03:13:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 03:13:06] Further information can be found at the LHC@home message board.
[2025-06-04 03:13:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 03:13:06] Checking for apptainer binary...
[2025-06-04 03:13:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 03:13:06] Running /usr/bin/apptainer --version
[2025-06-04 03:13:06] apptainer version 1.4.1-1.el9
[2025-06-04 03:13:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 03:13:06] c8-7-2.aglt2.org
[2025-06-04 03:13:06] apptainer works
[2025-06-04 03:13:06] Set ATHENA_PROC_NUMBER=8
[2025-06-04 03:13:06] Set ATHENA_CORE_NUMBER=8
[2025-06-04 03:13:06] Starting ATLAS job with PandaID=6678247979
[2025-06-04 03:13:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 04:04:15]  *** The last 200 lines of the pilot log: ***
[2025-06-04 04:04:15]  is_tar=False
[2025-06-04 04:04:15]  lfn=log.45006595._050656.job.log.tgz.1
[2025-06-04 04:04:15]  mtime=0
[2025-06-04 04:04:15]  protocol_id=None
[2025-06-04 04:04:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 04:04:15]  replicas=None
[2025-06-04 04:04:15]  scope=mc23_13p6TeV
[2025-06-04 04:04:15]  status=None
[2025-06-04 04:04:15]  status_code=0
[2025-06-04 04:04:15]  storage_token=
[2025-06-04 04:04:15]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6678247979/log.45006595._050656.job.log.tgz.1
[2025-06-04 04:04:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/b2/log.45006595._050656.job.log.tgz.1
[2025-06-04 04:04:15]  workdir=None
[2025-06-04 04:04:15] ]
[2025-06-04 04:04:15] 2025-06-04 08:03:49,996 | INFO     | transferring file log.45006595._050656.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6678247979/log.45006595._050656.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 04:04:15] 2025-06-04 08:03:49,996 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6678247979/log.45006595._050656.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._050656.job
[2025-06-04 04:04:15] 2025-06-04 08:03:50,013 | INFO     | adding to output.list: log.45006595._050656.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/b2/log.45006595._050656.job.log.tg
[2025-06-04 04:04:15] 2025-06-04 08:03:50,013 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 04:04:15] 2025-06-04 08:03:50,013 | INFO     | summary of transferred files:
[2025-06-04 04:04:15] 2025-06-04 08:03:50,014 | INFO     |  -- lfn=log.45006595._050656.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 04:04:15] 2025-06-04 08:03:50,014 | INFO     | stage-out finished correctly
[2025-06-04 04:04:15] 2025-06-04 08:03:50,239 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 04:04:15] 2025-06-04 08:03:51,761 | INFO     | monitor loop #224: job 0:6678247979 is in state 'finished'
[2025-06-04 04:04:15] 2025-06-04 08:03:51,761 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 04:04:15] 2025-06-04 08:03:51,808 | INFO     | job 6678247979 has state=finished
[2025-06-04 04:04:15] 2025-06-04 08:03:51,808 | INFO     | preparing for final server update for job 6678247979 in state='finished'
[2025-06-04 04:04:15] 2025-06-04 08:03:51,809 | INFO     | this job has now completed (state=finished)
[2025-06-04 04:04:15] 2025-06-04 08:03:51,809 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 04:04:15] 2025-06-04 08:03:51,809 | INFO     | log transfer has been attempted: DONE
[2025-06-04 04:04:15] 2025-06-04 08:03:51,809 | INFO     | job 6678247979 has finished - writing final server update
[2025-06-04 04:04:15] 2025-06-04 08:03:51,809 | INFO     | total number of processed events: 400 (read)
[2025-06-04 04:04:15] 2025-06-04 08:03:51,827 | INFO     | executing command: lscpu
[2025-06-04 04:04:15] 2025-06-04 08:03:51,910 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 04:04:15] 2025-06-04 08:03:54,267 | INFO     | monitor loop #225: job 0:6678247979 is in state 'finished'
[2025-06-04 04:04:15] 2025-06-04 08:03:54,267 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 04:04:15] 2025-06-04 08:03:55,926 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 04:04:15] 2025-06-04 08:03:55,927 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678247979/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 04:04:15] 2025-06-04 08:03:55,927 | INFO     | extracted standard info from prmon json
[2025-06-04 04:04:15] 2025-06-04 08:03:55,927 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 04:04:15] 2025-06-04 08:03:55,927 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 04:04:15] 2025-06-04 08:03:55,928 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 04:04:15] 2025-06-04 08:03:55,928 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 04:04:15] 2025-06-04 08:03:55,929 | INFO     | fitting pss+swap vs Time
[2025-06-04 04:04:15] 2025-06-04 08:03:55,929 | INFO     | sum of square deviations: 24640462.0
[2025-06-04 04:04:15] 2025-06-04 08:03:55,929 | INFO     | sum of deviations: 5220312290.0
[2025-06-04 04:04:15] 2025-06-04 08:03:55,929 | INFO     | mean x: 1749022808.0
[2025-06-04 04:04:15] 2025-06-04 08:03:55,929 | INFO     | mean y: 2345249.697674419
[2025-06-04 04:04:15] 2025-06-04 08:03:55,929 | INFO     | -- intersect: -370544491903.4657
[2025-06-04 04:04:15] 2025-06-04 08:03:55,929 | INFO     | intersect: -370544491903.4657
[2025-06-04 04:04:15] 2025-06-04 08:03:55,929 | INFO     | chi2: 0.8348526778003472
[2025-06-04 04:04:15] 2025-06-04 08:03:55,929 | INFO     | -- intersect: -370544491903.4657
[2025-06-04 04:04:15] 2025-06-04 08:03:55,929 | INFO     | current memory leak: 211.86 B/s (using 43 data points, chi2=0.83)
[2025-06-04 04:04:15] 2025-06-04 08:03:55,930 | INFO     | ..............................
[2025-06-04 04:04:15] 2025-06-04 08:03:55,930 | INFO     | . Timing measurements:
[2025-06-04 04:04:15] 2025-06-04 08:03:55,930 | INFO     | . get job = 0 s
[2025-06-04 04:04:15] 2025-06-04 08:03:55,930 | INFO     | . initial setup = 2 s
[2025-06-04 04:04:15] 2025-06-04 08:03:55,930 | INFO     | . payload setup = 6 s
[2025-06-04 04:04:15] 2025-06-04 08:03:55,930 | INFO     | . stage-in = 0 s
[2025-06-04 04:04:15] 2025-06-04 08:03:55,930 | INFO     | . payload execution = 3008 s
[2025-06-04 04:04:15] 2025-06-04 08:03:55,930 | INFO     | . stage-out = 0 s
[2025-06-04 04:04:15] 2025-06-04 08:03:55,930 | INFO     | . log creation = 0 s
[2025-06-04 04:04:15] 2025-06-04 08:03:55,930 | INFO     | ..............................
[2025-06-04 04:04:15] 2025-06-04 08:03:55,983 | INFO     | 
[2025-06-04 04:04:15] 2025-06-04 08:03:55,983 | INFO     | job summary report
[2025-06-04 04:04:15] 2025-06-04 08:03:55,983 | INFO     | --------------------------------------------------
[2025-06-04 04:04:15] 2025-06-04 08:03:55,983 | INFO     | PanDA job id: 6678247979
[2025-06-04 04:04:15] 2025-06-04 08:03:55,983 | INFO     | task id: 45006595
[2025-06-04 04:04:15] 2025-06-04 08:03:55,983 | INFO     | errors: (none)
[2025-06-04 04:04:15] 2025-06-04 08:03:55,983 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 04:04:15] 2025-06-04 08:03:55,983 | INFO     | pilot state: finished 
[2025-06-04 04:04:15] 2025-06-04 08:03:55,983 | INFO     | transexitcode: 0
[2025-06-04 04:04:15] 2025-06-04 08:03:55,983 | INFO     | exeerrorcode: 0
[2025-06-04 04:04:15] 2025-06-04 08:03:55,983 | INFO     | exeerrordiag: 
[2025-06-04 04:04:15] 2025-06-04 08:03:55,984 | INFO     | exitcode: 0
[2025-06-04 04:04:15] 2025-06-04 08:03:55,984 | INFO     | exitmsg: OK
[2025-06-04 04:04:15] 2025-06-04 08:03:55,984 | INFO     | cpuconsumptiontime: 19101 s
[2025-06-04 04:04:15] 2025-06-04 08:03:55,984 | INFO     | nevents: 400
[2025-06-04 04:04:15] 2025-06-04 08:03:55,984 | INFO     | neventsw: 0
[2025-06-04 04:04:15] 2025-06-04 08:03:55,984 | INFO     | pid: 3079078
[2025-06-04 04:04:15] 2025-06-04 08:03:55,984 | INFO     | pgrp: 3079078
[2025-06-04 04:04:15] 2025-06-04 08:03:55,984 | INFO     | corecount: 8
[2025-06-04 04:04:15] 2025-06-04 08:03:55,984 | INFO     | event service: False
[2025-06-04 04:04:15] 2025-06-04 08:03:55,984 | INFO     | sizes: {0: 2404962, 1: 2405161, 5: 2405367, 11: 2405423, 3017: 2430812, 3018: 2430811, 3019: 2439992, 3025: 2440106}
[2025-06-04 04:04:15] 2025-06-04 08:03:55,984 | INFO     | --------------------------------------------------
[2025-06-04 04:04:15] 2025-06-04 08:03:55,984 | INFO     | 
[2025-06-04 04:04:15] 2025-06-04 08:03:55,984 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 04:04:15] 2025-06-04 08:03:55,998 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,998 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,998 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,998 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,998 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,998 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,998 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,998 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,998 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,998 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,998 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,998 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,998 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,998 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,999 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,999 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,999 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,999 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 04:04:15] 2025-06-04 08:03:55,999 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,999 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 04:04:15] 2025-06-04 08:03:55,999 | INFO     | job 6678247979 has completed (purged errors)
[2025-06-04 04:04:15] 2025-06-04 08:03:55,999 | INFO     | overall cleanup function is called
[2025-06-04 04:04:15] 2025-06-04 08:03:57,006 | INFO     | --- collectZombieJob: --- 10, [3079078]
[2025-06-04 04:04:15] 2025-06-04 08:03:57,007 | INFO     | zombie collector waiting for pid 3079078
[2025-06-04 04:04:15] 2025-06-04 08:03:57,007 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 04:04:15] 2025-06-04 08:03:57,007 | INFO     | collected zombie processes
[2025-06-04 04:04:15] 2025-06-04 08:03:57,007 | INFO     | will attempt to kill all subprocesses of pid=3079078
[2025-06-04 04:04:15] 2025-06-04 08:03:58,056 | INFO     | PID=3060755 has CPU usage=13.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 04:04:15] 2025-06-04 08:03:58,057 | INFO     | .. there are 53 such processes running
[2025-06-04 04:04:15] 2025-06-04 08:03:58,112 | INFO     | process IDs to be killed: [3079078] (in reverse order)
[2025-06-04 04:04:15] 2025-06-04 08:03:58,273 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 04:04:15] 2025-06-04 08:03:58,273 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 04:04:15] 2025-06-04 08:03:58,298 | INFO     | did not find any defunct processes belonging to 3079078
[2025-06-04 04:04:15] 2025-06-04 08:03:58,321 | INFO     | did not find any defunct processes belonging to 3079078
[2025-06-04 04:04:15] 2025-06-04 08:03:58,322 | INFO     | ready for new job
[2025-06-04 04:04:15] 2025-06-04 08:03:58,322 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 04:04:15] 2025-06-04 08:03:58,323 | INFO     | **************************************
[2025-06-04 04:04:15] 2025-06-04 08:03:58,323 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 04:04:15] 2025-06-04 08:03:58,323 | INFO     | **************************************
[2025-06-04 04:04:15] 2025-06-04 08:03:58,323 | INFO     | 
[2025-06-04 04:04:15] 2025-06-04 08:03:58,341 | INFO     | architecture information:
[2025-06-04 04:04:15] 2025-06-04 08:03:58,341 | INFO     | executing command: cat /etc/os-release
[2025-06-04 04:04:15] 2025-06-04 08:03:58,357 | INFO     | cat /etc/os-release:
[2025-06-04 04:04:15] NAME="CentOS Linux"
[2025-06-04 04:04:15] VERSION="7 (Core)"
[2025-06-04 04:04:15] ID="centos"
[2025-06-04 04:04:15] ID_LIKE="rhel fedora"
[2025-06-04 04:04:15] VERSION_ID="7"
[2025-06-04 04:04:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 04:04:15] ANSI_COLOR="0;31"
[2025-06-04 04:04:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 04:04:15] HOME_URL="https://www.centos.org/"
[2025-06-04 04:04:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 04:04:15] 
[2025-06-04 04:04:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 04:04:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 04:04:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 04:04:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 04:04:15] 
[2025-06-04 04:04:15] 2025-06-04 08:03:58,357 | INFO     | **************************************
[2025-06-04 04:04:15] 2025-06-04 08:03:58,860 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 04:04:15] 2025-06-04 08:03:58,875 | INFO     | sufficient remaining disk space (94920245248 B)
[2025-06-04 04:04:15] 2025-06-04 08:03:58,875 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 04:04:15] 2025-06-04 08:03:58,875 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 04:04:15] 2025-06-04 08:03:58,875 | INFO     | update_server=False
[2025-06-04 04:04:15] 2025-06-04 08:03:58,875 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 04:04:15] 2025-06-04 08:03:58,875 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 04:04:15] 2025-06-04 08:03:58,876 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 04:04:15] 2025-06-04 08:03:58,876 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 04:04:15] 2025-06-04 08:03:58,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 04:04:15] 2025-06-04 08:03:58,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 04:04:15] 2025-06-04 08:03:59,277 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 04:04:15] 2025-06-04 08:03:59,277 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 04:04:15] 2025-06-04 08:03:59,278 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 04:04:15] 2025-06-04 08:03:59,278 | INFO     | will abort loop
[2025-06-04 04:04:15] 2025-06-04 08:03:59,488 | INFO     | all data control threads have been joined
[2025-06-04 04:04:15] 2025-06-04 08:03:59,658 | INFO     | all job control threads have been joined
[2025-06-04 04:04:15] 2025-06-04 08:03:59,881 | INFO     | [job] retrieve thread has finished
[2025-06-04 04:04:15] 2025-06-04 08:03:59,934 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 04:04:15] 2025-06-04 08:03:59,958 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 04:04:15] 2025-06-04 08:04:00,069 | INFO     | [payload] failed_post thread has finished
[2025-06-04 04:04:15] 2025-06-04 08:04:00,098 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 04:04:15] 2025-06-04 08:04:00,283 | INFO     | [job] job monitor thread has finished
[2025-06-04 04:04:15] 2025-06-04 08:04:00,296 | INFO     | all payload control threads have been joined
[2025-06-04 04:04:15] 2025-06-04 08:04:00,493 | INFO     | [data] control thread has finished
[2025-06-04 04:04:15] 2025-06-04 08:04:00,663 | INFO     | [job] control thread has finished
[2025-06-04 04:04:15] 2025-06-04 08:04:00,708 | INFO     | [payload] validate_post thread has finished
[2025-06-04 04:04:15] 2025-06-04 08:04:00,809 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 04:04:15] 2025-06-04 08:04:00,881 | INFO     | [data] copytool_out thread has finished
[2025-06-04 04:04:15] 2025-06-04 08:04:00,998 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 04:04:15] 2025-06-04 08:04:01,116 | INFO     | [data] copytool_in thread has finished
[2025-06-04 04:04:15] 2025-06-04 08:04:01,301 | INFO     | [payload] control thread has finished
[2025-06-04 04:04:15] 2025-06-04 08:04:01,313 | INFO     | [job] validate thread has finished
[2025-06-04 04:04:15] 2025-06-04 08:04:02,003 | INFO     | [job] queue monitor thread has finished
[2025-06-04 04:04:15] 2025-06-04 08:04:04,815 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 04:04:15] 2025-06-04 08:04:09,346 | INFO     | job.realtimelogging is not enabled
[2025-06-04 04:04:15] 2025-06-04 08:04:10,352 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 04:04:15] 2025-06-04 08:04:10,355 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140144750298944)>', '<ExcThread(monitor, started 140144036275968)>']
[2025-06-04 04:04:15] 2025-06-04 08:04:10,938 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 04:04:15] 2025-06-04 08:04:10,938 | INFO     | [monitor] control thread has ended
[2025-06-04 04:04:15] 2025-06-04 08:04:15,380 | INFO     | all workflow threads have been joined
[2025-06-04 04:04:15] 2025-06-04 08:04:15,381 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 04:04:15] 2025-06-04 08:04:15,381 | INFO     | traces error code: 0
[2025-06-04 04:04:15] 2025-06-04 08:04:15,381 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 04:04:15] 2025-06-04 08:04:15,483 [wrapper] ==== pilot stdout END ====
[2025-06-04 04:04:15] 2025-06-04 08:04:15,485 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 04:04:15] 2025-06-04 08:04:15,487 [wrapper] pilotpid: 3060755
[2025-06-04 04:04:15] 2025-06-04 08:04:15,489 [wrapper] Pilot exit status: 0
[2025-06-04 04:04:15] 2025-06-04 08:04:15,518 [wrapper] pandaids: 6678247979
[2025-06-04 04:04:15] 2025-06-04 08:04:15,634 [wrapper] cleanup supervisor_pilot  103722 3060756
[2025-06-04 04:04:15] 2025-06-04 08:04:15,636 [wrapper] Test setup, not cleaning
[2025-06-04 04:04:15] 2025-06-04 08:04:15,639 [wrapper] apfmon messages muted
[2025-06-04 04:04:15] 2025-06-04 08:04:15,641 [wrapper] ==== wrapper stdout END ====
[2025-06-04 04:04:15] 2025-06-04 08:04:15,643 [wrapper] ==== wrapper stderr END ====
[2025-06-04 04:04:15]  *** Error codes and diagnostics ***
[2025-06-04 04:04:15]     "exeErrorCode": 0,
[2025-06-04 04:04:15]     "exeErrorDiag": "",
[2025-06-04 04:04:15]     "pilotErrorCode": 0,
[2025-06-04 04:04:15]     "pilotErrorDiag": "",
[2025-06-04 04:04:15]  *** Listing of results directory ***
[2025-06-04 04:04:15] total 384840
[2025-06-04 04:04:15] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 21:59 pilot3.tar.gz
[2025-06-04 04:04:15] -rwx------. 1 boincer umatlas     37140 Jun  3 22:21 runpilot2-wrapper.sh
[2025-06-04 04:04:15] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 22:21 queuedata.json
[2025-06-04 04:04:15] -rw-r--r--. 1 boincer umatlas       100 Jun  4 03:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 04:04:15] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 03:13 run_atlas
[2025-06-04 04:04:15] -rw-r--r--. 1 boincer umatlas       105 Jun  4 03:13 job.xml
[2025-06-04 04:04:15] -rw-r--r--. 2 boincer umatlas 214003248 Jun  4 03:13 EVNT.45006593._002031.pool.root.1
[2025-06-04 04:04:15] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 03:13 shared
[2025-06-04 04:04:15] -rw-r--r--. 2 boincer umatlas    508879 Jun  4 03:13 input.tar.gz
[2025-06-04 04:04:15] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 03:13 start_atlas.sh
[2025-06-04 04:04:15] -rw-r--r--. 1 boincer umatlas         0 Jun  4 03:13 boinc_lockfile
[2025-06-04 04:04:15] -rw-r--r--. 1 boincer umatlas      2524 Jun  4 03:13 pandaJob.out
[2025-06-04 04:04:15] -rw-------. 1 boincer umatlas    986745 Jun  4 03:13 agis_schedconf.cvmfs.json
[2025-06-04 04:04:15] -rw-------. 1 boincer umatlas   1603667 Jun  4 03:13 agis_ddmendpoints.agis.ALL.json
[2025-06-04 04:04:15] drwx------. 4 boincer umatlas      4096 Jun  4 03:13 pilot3
[2025-06-04 04:04:15] -rw-r--r--. 1 boincer umatlas      7158 Jun  4 04:01 init_data.xml
[2025-06-04 04:04:15] -rw-------. 1 boincer umatlas        95 Jun  4 04:03 pilot_heartbeat.json
[2025-06-04 04:04:15] -rw-------. 1 boincer umatlas 175029434 Jun  4 04:03 HITS.45006595._050656.pool.root.1
[2025-06-04 04:04:15] -rw-r--r--. 1 boincer umatlas       529 Jun  4 04:03 boinc_task_state.xml
[2025-06-04 04:04:15] -rw-------. 1 boincer umatlas      1045 Jun  4 04:03 memory_monitor_summary.json
[2025-06-04 04:04:15] -rw-------. 1 boincer umatlas    285359 Jun  4 04:03 log.45006595._050656.job.log.tgz.1
[2025-06-04 04:04:15] -rw-------. 1 boincer umatlas      7703 Jun  4 04:03 heartbeat.json
[2025-06-04 04:04:15] -rw-r--r--. 1 boincer umatlas        27 Jun  4 04:04 wrapper_checkpoint.txt
[2025-06-04 04:04:15] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 04:04 boinc_mmap_file
[2025-06-04 04:04:15] -rw-------. 1 boincer umatlas      4734 Jun  4 04:04 pilotlog.txt
[2025-06-04 04:04:15] -rw-------. 1 boincer umatlas    316381 Jun  4 04:04 log.45006595._050656.job.log.1
[2025-06-04 04:04:15] -rw-------. 1 boincer umatlas       357 Jun  4 04:04 output.list
[2025-06-04 04:04:15] -rw-r--r--. 1 boincer umatlas       620 Jun  4 04:04 runtime_log
[2025-06-04 04:04:15] -rw-------. 1 boincer umatlas    624640 Jun  4 04:04 result.tar.gz
[2025-06-04 04:04:15] -rw-r--r--. 1 boincer umatlas      8649 Jun  4 04:04 runtime_log.err
[2025-06-04 04:04:15] -rw-------. 1 boincer umatlas       653 Jun  4 04:04 1DVKDmQwsg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7tmKDmjUZarn.diag
[2025-06-04 04:04:15] -rw-r--r--. 1 boincer umatlas     21548 Jun  4 04:04 stderr.txt
[2025-06-04 04:04:15] HITS file was successfully produced:
[2025-06-04 04:04:15] -rw-------. 1 boincer umatlas 175029434 Jun  4 04:03 shared/HITS.pool.root.1
[2025-06-04 04:04:15]  *** Contents of shared directory: ***
[2025-06-04 04:04:15] total 381052
[2025-06-04 04:04:15] -rw-r--r--. 2 boincer umatlas 214003248 Jun  4 03:13 ATLAS.root_0
[2025-06-04 04:04:15] -rw-r--r--. 2 boincer umatlas    508879 Jun  4 03:13 input.tar.gz
[2025-06-04 04:04:15] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 03:13 start_atlas.sh
[2025-06-04 04:04:15] -rw-------. 1 boincer umatlas 175029434 Jun  4 04:03 HITS.pool.root.1
[2025-06-04 04:04:15] -rw-------. 1 boincer umatlas    624640 Jun  4 04:04 result.tar.gz
04:04:17 (3051474): run_atlas exited; CPU time 19166.866236
04:04:17 (3051474): called boinc_finish(0)

</stderr_txt>
]]>

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