Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:04:54 (14051): wrapper (7.7.26015): starting
03:04:54 (14051): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 03:04:54] Arguments: --nthreads 8
[2025-06-04 03:04:54] Threads: 8
[2025-06-04 03:04:54] Checking for CVMFS
[2025-06-04 03:04:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 03:04:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 03:04:55] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 03:04:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 03:04:55] 2.11.2.0 2827 35358 72976 146771 3 58 18510171 20275201 1 130560 0 11364974 99.976 6405312 7621 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 03:04:55] CVMFS is ok
[2025-06-04 03:04:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 03:04:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 03:04:55] Further information can be found at the LHC@home message board.
[2025-06-04 03:04:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 03:04:55] Checking for apptainer binary...
[2025-06-04 03:04:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 03:04:55] Running /usr/bin/apptainer --version
[2025-06-04 03:04:55] apptainer version 1.3.2-1.el7
[2025-06-04 03:04:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 03:04:57] c-115-13.aglt2.org
[2025-06-04 03:04:57] apptainer works
[2025-06-04 03:04:57] Set ATHENA_PROC_NUMBER=8
[2025-06-04 03:04:57] Set ATHENA_CORE_NUMBER=8
[2025-06-04 03:04:57] Starting ATLAS job with PandaID=6678247862
[2025-06-04 03:04:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 04:48:53]  *** The last 200 lines of the pilot log: ***
[2025-06-04 04:48:53] 2025-06-04 08:48:37,573 | INFO     | extracted standard info from prmon json
[2025-06-04 04:48:53] 2025-06-04 08:48:37,574 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 04:48:53] 2025-06-04 08:48:37,574 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 04:48:53] 2025-06-04 08:48:37,575 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 04:48:53] 2025-06-04 08:48:37,575 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 04:48:53] 2025-06-04 08:48:37,578 | INFO     | fitting pss+swap vs Time
[2025-06-04 04:48:53] 2025-06-04 08:48:37,579 | INFO     | sum of square deviations: 329031285.5
[2025-06-04 04:48:53] 2025-06-04 08:48:37,579 | INFO     | sum of deviations: 4672557361.000003
[2025-06-04 04:48:53] 2025-06-04 08:48:37,579 | INFO     | mean x: 1749023824.5
[2025-06-04 04:48:53] 2025-06-04 08:48:37,580 | INFO     | mean y: 2446559.1764705884
[2025-06-04 04:48:53] 2025-06-04 08:48:37,580 | INFO     | -- intersect: -24835356123.668568
[2025-06-04 04:48:53] 2025-06-04 08:48:37,580 | INFO     | intersect: -24835356123.668568
[2025-06-04 04:48:53] 2025-06-04 08:48:37,580 | INFO     | chi2: 2.2171405154184356
[2025-06-04 04:48:53] 2025-06-04 08:48:37,580 | INFO     | sum of square deviations: 282974608.0
[2025-06-04 04:48:53] 2025-06-04 08:48:37,581 | INFO     | sum of deviations: 10928155002.000002
[2025-06-04 04:48:53] 2025-06-04 08:48:37,581 | INFO     | mean x: 1749023672.0
[2025-06-04 04:48:53] 2025-06-04 08:48:37,581 | INFO     | mean y: 2466393.2474226803
[2025-06-04 04:48:53] 2025-06-04 08:48:37,581 | INFO     | -- intersect: -67542823005.23885
[2025-06-04 04:48:53] 2025-06-04 08:48:37,581 | INFO     | intersect: -67542823005.23885
[2025-06-04 04:48:53] 2025-06-04 08:48:37,581 | INFO     | chi2: 1.4535329066296905
[2025-06-04 04:48:53] 2025-06-04 08:48:37,582 | INFO     | current chi2=1.4535329066296905 (change=34.44110120574073 %)
[2025-06-04 04:48:53] 2025-06-04 08:48:37,582 | INFO     | sum of square deviations: 241429643.0
[2025-06-04 04:48:53] 2025-06-04 08:48:37,582 | INFO     | sum of deviations: 10359157432.999998
[2025-06-04 04:48:53] 2025-06-04 08:48:37,582 | INFO     | mean x: 1749023519.5
[2025-06-04 04:48:53] 2025-06-04 08:48:37,582 | INFO     | mean y: 2464302.6304347827
[2025-06-04 04:48:53] 2025-06-04 08:48:37,583 | INFO     | -- intersect: -75043871215.16777
[2025-06-04 04:48:53] 2025-06-04 08:48:37,583 | INFO     | intersect: -75043871215.16777
[2025-06-04 04:48:53] 2025-06-04 08:48:37,583 | INFO     | chi2: 1.4573823836425728
[2025-06-04 04:48:53] 2025-06-04 08:48:37,583 | INFO     | current chi2=1.4573823836425728 (change=-0.2648359039774398 %)
[2025-06-04 04:48:53] 2025-06-04 08:48:37,583 | INFO     | right removable region: 91
[2025-06-04 04:48:53] 2025-06-04 08:48:37,583 | INFO     | sum of square deviations: 282974608.0
[2025-06-04 04:48:53] 2025-06-04 08:48:37,584 | INFO     | sum of deviations: -9354891679.999998
[2025-06-04 04:48:53] 2025-06-04 08:48:37,584 | INFO     | mean x: 1749023977.0
[2025-06-04 04:48:53] 2025-06-04 08:48:37,584 | INFO     | mean y: 2491861.556701031
[2025-06-04 04:48:53] 2025-06-04 08:48:37,584 | INFO     | -- intersect: 57823686371.552475
[2025-06-04 04:48:53] 2025-06-04 08:48:37,584 | INFO     | intersect: 57823686371.552475
[2025-06-04 04:48:53] 2025-06-04 08:48:37,584 | INFO     | chi2: 0.8517249573204986
[2025-06-04 04:48:53] 2025-06-04 08:48:37,585 | INFO     | current chi2=0.8517249573204986 (change=61.584529649905626 %)
[2025-06-04 04:48:53] 2025-06-04 08:48:37,585 | INFO     | sum of square deviations: 241429643.0
[2025-06-04 04:48:53] 2025-06-04 08:48:37,585 | INFO     | sum of deviations: -5789307846.0
[2025-06-04 04:48:53] 2025-06-04 08:48:37,585 | INFO     | mean x: 1749024129.5
[2025-06-04 04:48:53] 2025-06-04 08:48:37,585 | INFO     | mean y: 2478722.086956522
[2025-06-04 04:48:53] 2025-06-04 08:48:37,585 | INFO     | -- intersect: 41942809619.05834
[2025-06-04 04:48:53] 2025-06-04 08:48:37,586 | INFO     | intersect: 41942809619.05834
[2025-06-04 04:48:53] 2025-06-04 08:48:37,586 | INFO     | chi2: 0.8203818393716756
[2025-06-04 04:48:53] 2025-06-04 08:48:37,586 | INFO     | current chi2=0.8203818393716756 (change=3.6799576764108757 %)
[2025-06-04 04:48:53] 2025-06-04 08:48:37,586 | INFO     | left removable region: 20
[2025-06-04 04:48:53] 2025-06-04 08:48:37,586 | INFO     | sum of square deviations: 110960220.0
[2025-06-04 04:48:53] 2025-06-04 08:48:37,587 | INFO     | sum of deviations: 369800788.0
[2025-06-04 04:48:53] 2025-06-04 08:48:37,587 | INFO     | mean x: 1749024099.0
[2025-06-04 04:48:53] 2025-06-04 08:48:37,587 | INFO     | mean y: 2502509.3661971833
[2025-06-04 04:48:53] 2025-06-04 08:48:37,587 | INFO     | -- intersect: -5826527840.800646
[2025-06-04 04:48:53] 2025-06-04 08:48:37,587 | INFO     | intersect: -5826527840.800646
[2025-06-04 04:48:53] 2025-06-04 08:48:37,587 | INFO     | chi2: 0.00037440204123672635
[2025-06-04 04:48:53] 2025-06-04 08:48:37,587 | INFO     | -- intersect: -5826527840.800646
[2025-06-04 04:48:53] 2025-06-04 08:48:37,588 | INFO     | current memory leak: 3.33 B/s (using 71 data points, chi2=0.00)
[2025-06-04 04:48:53] 2025-06-04 08:48:37,588 | INFO     | ..............................
[2025-06-04 04:48:53] 2025-06-04 08:48:37,588 | INFO     | . Timing measurements:
[2025-06-04 04:48:53] 2025-06-04 08:48:37,588 | INFO     | . get job = 0 s
[2025-06-04 04:48:53] 2025-06-04 08:48:37,588 | INFO     | . initial setup = 2 s
[2025-06-04 04:48:53] 2025-06-04 08:48:37,589 | INFO     | . payload setup = 11 s
[2025-06-04 04:48:53] 2025-06-04 08:48:37,589 | INFO     | . stage-in = 0 s
[2025-06-04 04:48:53] 2025-06-04 08:48:37,589 | INFO     | . payload execution = 6167 s
[2025-06-04 04:48:53] 2025-06-04 08:48:37,589 | INFO     | . stage-out = 0 s
[2025-06-04 04:48:53] 2025-06-04 08:48:37,589 | INFO     | . log creation = 0 s
[2025-06-04 04:48:53] 2025-06-04 08:48:37,589 | INFO     | ..............................
[2025-06-04 04:48:53] 2025-06-04 08:48:37,676 | INFO     | 
[2025-06-04 04:48:53] 2025-06-04 08:48:37,676 | INFO     | job summary report
[2025-06-04 04:48:53] 2025-06-04 08:48:37,677 | INFO     | --------------------------------------------------
[2025-06-04 04:48:53] 2025-06-04 08:48:37,677 | INFO     | PanDA job id: 6678247862
[2025-06-04 04:48:53] 2025-06-04 08:48:37,677 | INFO     | task id: 45006595
[2025-06-04 04:48:53] 2025-06-04 08:48:37,677 | INFO     | errors: (none)
[2025-06-04 04:48:53] 2025-06-04 08:48:37,677 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 04:48:53] 2025-06-04 08:48:37,677 | INFO     | pilot state: finished 
[2025-06-04 04:48:53] 2025-06-04 08:48:37,678 | INFO     | transexitcode: 0
[2025-06-04 04:48:53] 2025-06-04 08:48:37,678 | INFO     | exeerrorcode: 0
[2025-06-04 04:48:53] 2025-06-04 08:48:37,678 | INFO     | exeerrordiag: 
[2025-06-04 04:48:53] 2025-06-04 08:48:37,678 | INFO     | exitcode: 0
[2025-06-04 04:48:53] 2025-06-04 08:48:37,678 | INFO     | exitmsg: OK
[2025-06-04 04:48:53] 2025-06-04 08:48:37,678 | INFO     | cpuconsumptiontime: 45910 s
[2025-06-04 04:48:53] 2025-06-04 08:48:37,679 | INFO     | nevents: 400
[2025-06-04 04:48:53] 2025-06-04 08:48:37,679 | INFO     | neventsw: 0
[2025-06-04 04:48:53] 2025-06-04 08:48:37,679 | INFO     | pid: 25056
[2025-06-04 04:48:53] 2025-06-04 08:48:37,679 | INFO     | pgrp: 25056
[2025-06-04 04:48:53] 2025-06-04 08:48:37,679 | INFO     | corecount: 8
[2025-06-04 04:48:53] 2025-06-04 08:48:37,679 | INFO     | event service: False
[2025-06-04 04:48:53] 2025-06-04 08:48:37,679 | INFO     | sizes: {0: 2405184, 6: 2405390, 11: 2405418, 6181: 2432048, 6182: 2432047, 6183: 2441228, 6189: 2441342}
[2025-06-04 04:48:53] 2025-06-04 08:48:37,680 | INFO     | --------------------------------------------------
[2025-06-04 04:48:53] 2025-06-04 08:48:37,680 | INFO     | 
[2025-06-04 04:48:53] 2025-06-04 08:48:37,680 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 04:48:53] 2025-06-04 08:48:37,704 | INFO     | 6208s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-04 04:48:53] 2025-06-04 08:48:37,708 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,708 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,709 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,709 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,709 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,709 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,709 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,709 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,710 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,710 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,710 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,710 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,710 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,710 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,711 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,711 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,711 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,711 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 04:48:53] 2025-06-04 08:48:37,711 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,712 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 04:48:53] 2025-06-04 08:48:37,712 | INFO     | job 6678247862 has completed (purged errors)
[2025-06-04 04:48:53] 2025-06-04 08:48:37,712 | INFO     | overall cleanup function is called
[2025-06-04 04:48:53] 2025-06-04 08:48:38,720 | INFO     | --- collectZombieJob: --- 10, [25056]
[2025-06-04 04:48:53] 2025-06-04 08:48:38,721 | INFO     | zombie collector waiting for pid 25056
[2025-06-04 04:48:53] 2025-06-04 08:48:38,721 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 04:48:53] 2025-06-04 08:48:38,721 | INFO     | collected zombie processes
[2025-06-04 04:48:53] 2025-06-04 08:48:38,721 | INFO     | will attempt to kill all subprocesses of pid=25056
[2025-06-04 04:48:53] 2025-06-04 08:48:38,808 | INFO     | process IDs to be killed: [25056] (in reverse order)
[2025-06-04 04:48:53] 2025-06-04 08:48:38,871 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 04:48:53] 2025-06-04 08:48:38,871 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 04:48:53] 2025-06-04 08:48:38,876 | INFO     | did not find any defunct processes belonging to 25056
[2025-06-04 04:48:53] 2025-06-04 08:48:38,879 | INFO     | did not find any defunct processes belonging to 25056
[2025-06-04 04:48:53] 2025-06-04 08:48:38,880 | INFO     | ready for new job
[2025-06-04 04:48:53] 2025-06-04 08:48:38,880 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 04:48:53] 2025-06-04 08:48:38,881 | INFO     | **************************************
[2025-06-04 04:48:53] 2025-06-04 08:48:38,882 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 04:48:53] 2025-06-04 08:48:38,882 | INFO     | **************************************
[2025-06-04 04:48:53] 2025-06-04 08:48:38,882 | INFO     | 
[2025-06-04 04:48:53] 2025-06-04 08:48:38,883 | INFO     | architecture information:
[2025-06-04 04:48:53] 2025-06-04 08:48:38,883 | INFO     | executing command: cat /etc/os-release
[2025-06-04 04:48:53] 2025-06-04 08:48:38,902 | INFO     | cat /etc/os-release:
[2025-06-04 04:48:53] NAME="CentOS Linux"
[2025-06-04 04:48:53] VERSION="7 (Core)"
[2025-06-04 04:48:53] ID="centos"
[2025-06-04 04:48:53] ID_LIKE="rhel fedora"
[2025-06-04 04:48:53] VERSION_ID="7"
[2025-06-04 04:48:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 04:48:53] ANSI_COLOR="0;31"
[2025-06-04 04:48:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 04:48:53] HOME_URL="https://www.centos.org/"
[2025-06-04 04:48:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 04:48:53] 
[2025-06-04 04:48:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 04:48:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 04:48:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 04:48:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 04:48:53] 
[2025-06-04 04:48:53] 2025-06-04 08:48:38,903 | INFO     | **************************************
[2025-06-04 04:48:53] 2025-06-04 08:48:39,406 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 04:48:53] 2025-06-04 08:48:39,426 | INFO     | sufficient remaining disk space (18640535552 B)
[2025-06-04 04:48:53] 2025-06-04 08:48:39,427 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 04:48:53] 2025-06-04 08:48:39,427 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 04:48:53] 2025-06-04 08:48:39,427 | INFO     | update_server=False
[2025-06-04 04:48:53] 2025-06-04 08:48:39,427 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 04:48:53] 2025-06-04 08:48:39,428 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 04:48:53] 2025-06-04 08:48:39,428 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 04:48:53] 2025-06-04 08:48:39,428 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 04:48:53] 2025-06-04 08:48:39,429 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 04:48:53] 2025-06-04 08:48:39,429 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 04:48:53] 2025-06-04 08:48:39,429 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 04:48:53] 2025-06-04 08:48:39,430 | INFO     | aborting loop
[2025-06-04 04:48:53] 2025-06-04 08:48:39,724 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 04:48:53] 2025-06-04 08:48:39,756 | INFO     | all data control threads have been joined
[2025-06-04 04:48:53] 2025-06-04 08:48:39,884 | INFO     | all job control threads have been joined
[2025-06-04 04:48:53] 2025-06-04 08:48:40,433 | INFO     | [job] retrieve thread has finished
[2025-06-04 04:48:53] 2025-06-04 08:48:40,435 | INFO     | [job] queue monitor thread has finished
[2025-06-04 04:48:53] 2025-06-04 08:48:40,435 | INFO     | [job] job monitor thread has finished
[2025-06-04 04:48:53] 2025-06-04 08:48:40,761 | INFO     | [data] control thread has finished
[2025-06-04 04:48:53] 2025-06-04 08:48:40,772 | INFO     | all payload control threads have been joined
[2025-06-04 04:48:53] 2025-06-04 08:48:40,773 | INFO     | [data] copytool_in thread has finished
[2025-06-04 04:48:53] 2025-06-04 08:48:40,805 | INFO     | [payload] failed_post thread has finished
[2025-06-04 04:48:53] 2025-06-04 08:48:40,805 | INFO     | [job] validate thread has finished
[2025-06-04 04:48:53] 2025-06-04 08:48:40,889 | INFO     | [job] control thread has finished
[2025-06-04 04:48:53] 2025-06-04 08:48:41,096 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 04:48:53] 2025-06-04 08:48:41,162 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 04:48:53] 2025-06-04 08:48:41,404 | INFO     | [payload] validate_post thread has finished
[2025-06-04 04:48:53] 2025-06-04 08:48:41,586 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 04:48:53] 2025-06-04 08:48:41,705 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 04:48:53] 2025-06-04 08:48:41,730 | INFO     | [data] copytool_out thread has finished
[2025-06-04 04:48:53] 2025-06-04 08:48:41,778 | INFO     | [payload] control thread has finished
[2025-06-04 04:48:53] 2025-06-04 08:48:42,307 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 04:48:53] 2025-06-04 08:48:46,313 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 04:48:53] 2025-06-04 08:48:48,185 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140259738240832)>', '<ExcThread(monitor, started 140258465281792)>']
[2025-06-04 04:48:53] 2025-06-04 08:48:48,471 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 04:48:53] 2025-06-04 08:48:48,471 | INFO     | [monitor] control thread has ended
[2025-06-04 04:48:53] 2025-06-04 08:48:53,210 | INFO     | all workflow threads have been joined
[2025-06-04 04:48:53] 2025-06-04 08:48:53,210 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 04:48:53] 2025-06-04 08:48:53,211 | INFO     | traces error code: 0
[2025-06-04 04:48:53] 2025-06-04 08:48:53,211 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 04:48:53] 2025-06-04 08:48:53,314 [wrapper] ==== pilot stdout END ====
[2025-06-04 04:48:53] 2025-06-04 08:48:53,319 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 04:48:53] 2025-06-04 08:48:53,324 [wrapper] pilotpid: 18346
[2025-06-04 04:48:53] 2025-06-04 08:48:53,329 [wrapper] Pilot exit status: 0
[2025-06-04 04:48:53] 2025-06-04 08:48:53,348 [wrapper] pandaids: 6678247862
[2025-06-04 04:48:53] 2025-06-04 08:48:53,384 [wrapper] cleanup supervisor_pilot  9751 18347
[2025-06-04 04:48:53] 2025-06-04 08:48:53,389 [wrapper] Test setup, not cleaning
[2025-06-04 04:48:53] 2025-06-04 08:48:53,393 [wrapper] apfmon messages muted
[2025-06-04 04:48:53] 2025-06-04 08:48:53,398 [wrapper] ==== wrapper stdout END ====
[2025-06-04 04:48:53] 2025-06-04 08:48:53,402 [wrapper] ==== wrapper stderr END ====
[2025-06-04 04:48:53]  *** Error codes and diagnostics ***
[2025-06-04 04:48:53]     "exeErrorCode": 0,
[2025-06-04 04:48:53]     "exeErrorDiag": "",
[2025-06-04 04:48:53]     "pilotErrorCode": 0,
[2025-06-04 04:48:53]     "pilotErrorDiag": "",
[2025-06-04 04:48:53]  *** Listing of results directory ***
[2025-06-04 04:48:53] total 394736
[2025-06-04 04:48:53] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 21:59 pilot3.tar.gz
[2025-06-04 04:48:53] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 22:17 queuedata.json
[2025-06-04 04:48:53] -rwx------ 1 boincer umatlas     37140 Jun  3 22:18 runpilot2-wrapper.sh
[2025-06-04 04:48:53] -rw-r--r-- 1 boincer umatlas       100 Jun  4 03:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 04:48:53] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 03:04 run_atlas
[2025-06-04 04:48:53] -rw-r--r-- 1 boincer umatlas       105 Jun  4 03:04 job.xml
[2025-06-04 04:48:53] -rw-r--r-- 2 boincer umatlas 216122271 Jun  4 03:04 EVNT.45006593._002026.pool.root.1
[2025-06-04 04:48:53] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 03:04 start_atlas.sh
[2025-06-04 04:48:53] drwxrwx--x 2 boincer umatlas      4096 Jun  4 03:04 shared
[2025-06-04 04:48:53] -rw-r--r-- 2 boincer umatlas    508884 Jun  4 03:04 input.tar.gz
[2025-06-04 04:48:53] -rw-r--r-- 1 boincer umatlas         0 Jun  4 03:04 boinc_lockfile
[2025-06-04 04:48:53] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 03:04 pandaJob.out
[2025-06-04 04:48:53] -rw------- 1 boincer umatlas    986745 Jun  4 03:05 agis_schedconf.cvmfs.json
[2025-06-04 04:48:53] -rw------- 1 boincer umatlas   1603667 Jun  4 03:05 agis_ddmendpoints.agis.ALL.json
[2025-06-04 04:48:53] drwx------ 4 boincer umatlas      4096 Jun  4 03:05 pilot3
[2025-06-04 04:48:53] -rw-r--r-- 1 boincer umatlas      5825 Jun  4 04:46 init_data.xml
[2025-06-04 04:48:53] -rw------- 1 boincer umatlas 182448738 Jun  4 04:47 HITS.45006595._050539.pool.root.1
[2025-06-04 04:48:53] -rw-r--r-- 1 boincer umatlas       529 Jun  4 04:48 boinc_task_state.xml
[2025-06-04 04:48:53] -rw------- 1 boincer umatlas      1049 Jun  4 04:48 memory_monitor_summary.json
[2025-06-04 04:48:53] -rw------- 1 boincer umatlas    323960 Jun  4 04:48 log.45006595._050539.job.log.tgz.1
[2025-06-04 04:48:53] -rw------- 1 boincer umatlas        95 Jun  4 04:48 pilot_heartbeat.json
[2025-06-04 04:48:53] -rw------- 1 boincer umatlas      7755 Jun  4 04:48 heartbeat.json
[2025-06-04 04:48:53] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 04:48 boinc_mmap_file
[2025-06-04 04:48:53] -rw-r--r-- 1 boincer umatlas        27 Jun  4 04:48 wrapper_checkpoint.txt
[2025-06-04 04:48:53] -rw------- 1 boincer umatlas      4476 Jun  4 04:48 pilotlog.txt
[2025-06-04 04:48:53] -rw------- 1 boincer umatlas    575731 Jun  4 04:48 log.45006595._050539.job.log.1
[2025-06-04 04:48:53] -rw------- 1 boincer umatlas       357 Jun  4 04:48 output.list
[2025-06-04 04:48:53] -rw-r--r-- 1 boincer umatlas       620 Jun  4 04:48 runtime_log
[2025-06-04 04:48:53] -rw------- 1 boincer umatlas    921600 Jun  4 04:48 result.tar.gz
[2025-06-04 04:48:53] -rw-r--r-- 1 boincer umatlas      8659 Jun  4 04:48 runtime_log.err
[2025-06-04 04:48:53] -rw------- 1 boincer umatlas       658 Jun  4 04:48 DvTLDmZtsg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmasmKDmvPPvnn.diag
[2025-06-04 04:48:53] -rw-r--r-- 1 boincer umatlas     20793 Jun  4 04:48 stderr.txt
[2025-06-04 04:48:53] HITS file was successfully produced:
[2025-06-04 04:48:53] -rw------- 1 boincer umatlas 182448738 Jun  4 04:47 shared/HITS.pool.root.1
[2025-06-04 04:48:53]  *** Contents of shared directory: ***
[2025-06-04 04:48:53] total 390656
[2025-06-04 04:48:53] -rw-r--r-- 2 boincer umatlas 216122271 Jun  4 03:04 ATLAS.root_0
[2025-06-04 04:48:53] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 03:04 start_atlas.sh
[2025-06-04 04:48:53] -rw-r--r-- 2 boincer umatlas    508884 Jun  4 03:04 input.tar.gz
[2025-06-04 04:48:53] -rw------- 1 boincer umatlas 182448738 Jun  4 04:47 HITS.pool.root.1
[2025-06-04 04:48:53] -rw------- 1 boincer umatlas    921600 Jun  4 04:48 result.tar.gz
04:48:54 (14051): run_atlas exited; CPU time 45880.200593
04:48:54 (14051): called boinc_finish(0)

</stderr_txt>
]]>

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