Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
16:23:11 (680895): wrapper (7.7.26015): starting
16:23:11 (680895): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 16:23:11] Arguments: --nthreads 4
[2025-06-04 16:23:11] Threads: 4
[2025-06-04 16:23:11] Checking for CVMFS
[2025-06-04 16:23:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 16:23:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 16:23:11] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 16:23:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 16:23:12] 2.9.2.0 3887516 2516 91988 146781 3 56 31466163 36864000 0 130560 0 2651758 99.994 601205 33394 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 16:23:12] CVMFS is ok
[2025-06-04 16:23:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 16:23:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 16:23:12] Further information can be found at the LHC@home message board.
[2025-06-04 16:23:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 16:23:12] Checking for apptainer binary...
[2025-06-04 16:23:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 16:23:12] Running /usr/bin/apptainer --version
[2025-06-04 16:23:12] apptainer version 1.3.6-6.1
[2025-06-04 16:23:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 16:23:12] thA325
[2025-06-04 16:23:12] apptainer works
[2025-06-04 16:23:12] Set ATHENA_PROC_NUMBER=4
[2025-06-04 16:23:12] Set ATHENA_CORE_NUMBER=4
[2025-06-04 16:23:12] Starting ATLAS job with PandaID=6678246823
[2025-06-04 16:23:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 17:25:37]  *** The last 200 lines of the pilot log: ***
[2025-06-04 17:25:37]  lfn=log.45006595._050151.job.log.tgz.1
[2025-06-04 17:25:37]  mtime=0
[2025-06-04 17:25:37]  protocol_id=None
[2025-06-04 17:25:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 17:25:37]  replicas=None
[2025-06-04 17:25:37]  scope=mc23_13p6TeV
[2025-06-04 17:25:37]  status=None
[2025-06-04 17:25:37]  status_code=0
[2025-06-04 17:25:37]  storage_token=
[2025-06-04 17:25:37]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6678246823/log.45006595._050151.job.log.tgz.1
[2025-06-04 17:25:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/77/d8/log.45006595._050151.job.log.tgz.1
[2025-06-04 17:25:37]  workdir=None
[2025-06-04 17:25:37] ]
[2025-06-04 17:25:37] 2025-06-04 15:25:09,691 | INFO     | transferring file log.45006595._050151.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6678246823/log.45006595._050151.job.log.tgz.1 to /local/data/boinc/
[2025-06-04 17:25:37] 2025-06-04 15:25:09,691 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6678246823/log.45006595._050151.job.log.tgz.1 /local/data/boinc/slots/0/log.45006595._0501
[2025-06-04 17:25:37] 2025-06-04 15:25:09,709 | INFO     | adding to output.list: log.45006595._050151.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/77/d8/log.45006595._050151.job.log.tg
[2025-06-04 17:25:37] 2025-06-04 15:25:09,709 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 17:25:37] 2025-06-04 15:25:09,710 | INFO     | summary of transferred files:
[2025-06-04 17:25:37] 2025-06-04 15:25:09,710 | INFO     |  -- lfn=log.45006595._050151.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 17:25:37] 2025-06-04 15:25:09,710 | INFO     | stage-out finished correctly
[2025-06-04 17:25:37] 2025-06-04 15:25:10,204 | INFO     | monitor loop #287: job 0:6678246823 is in state 'finished'
[2025-06-04 17:25:37] 2025-06-04 15:25:10,205 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 17:25:37] 2025-06-04 15:25:11,695 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 17:25:37] 2025-06-04 15:25:12,708 | INFO     | monitor loop #288: job 0:6678246823 is in state 'finished'
[2025-06-04 17:25:37] 2025-06-04 15:25:12,709 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 17:25:37] 2025-06-04 15:25:14,528 | INFO     | job 6678246823 has state=finished
[2025-06-04 17:25:37] 2025-06-04 15:25:14,528 | INFO     | preparing for final server update for job 6678246823 in state='finished'
[2025-06-04 17:25:37] 2025-06-04 15:25:14,528 | INFO     | this job has now completed (state=finished)
[2025-06-04 17:25:37] 2025-06-04 15:25:14,528 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 17:25:37] 2025-06-04 15:25:14,528 | INFO     | log transfer has been attempted: DONE
[2025-06-04 17:25:37] 2025-06-04 15:25:14,529 | INFO     | job 6678246823 has finished - writing final server update
[2025-06-04 17:25:37] 2025-06-04 15:25:14,529 | INFO     | total number of processed events: 400 (read)
[2025-06-04 17:25:37] 2025-06-04 15:25:14,530 | INFO     | executing command: lscpu
[2025-06-04 17:25:37] 2025-06-04 15:25:14,552 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 17:25:37] 2025-06-04 15:25:14,947 | INFO     | PID=684597 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 17:25:37] 2025-06-04 15:25:15,212 | INFO     | monitor loop #289: job 0:6678246823 is in state 'finished'
[2025-06-04 17:25:37] 2025-06-04 15:25:15,212 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 17:25:37] 2025-06-04 15:25:17,715 | INFO     | monitor loop #290: job 0:6678246823 is in state 'finished'
[2025-06-04 17:25:37] 2025-06-04 15:25:17,715 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 17:25:37] 2025-06-04 15:25:17,793 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 17:25:37] 2025-06-04 15:25:17,793 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6678246823/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 17:25:37] 2025-06-04 15:25:17,793 | INFO     | extracted standard info from prmon json
[2025-06-04 17:25:37] 2025-06-04 15:25:17,793 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 17:25:37] 2025-06-04 15:25:17,793 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 17:25:37] 2025-06-04 15:25:17,793 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 17:25:37] 2025-06-04 15:25:17,793 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 17:25:37] 2025-06-04 15:25:17,794 | INFO     | fitting pss+swap vs Time
[2025-06-04 17:25:37] 2025-06-04 15:25:17,794 | INFO     | sum of square deviations: 48810217.5
[2025-06-04 17:25:37] 2025-06-04 15:25:17,794 | INFO     | sum of deviations: -2033656094.5
[2025-06-04 17:25:37] 2025-06-04 15:25:17,794 | INFO     | mean x: 1749048943.5
[2025-06-04 17:25:37] 2025-06-04 15:25:17,794 | INFO     | mean y: 2421987.425925926
[2025-06-04 17:25:37] 2025-06-04 15:25:17,794 | INFO     | -- intersect: 72875771579.19041
[2025-06-04 17:25:37] 2025-06-04 15:25:17,794 | INFO     | intersect: 72875771579.19041
[2025-06-04 17:25:37] 2025-06-04 15:25:17,795 | INFO     | chi2: 0.04852411684134705
[2025-06-04 17:25:37] 2025-06-04 15:25:17,795 | INFO     | -- intersect: 72875771579.19041
[2025-06-04 17:25:37] 2025-06-04 15:25:17,795 | INFO     | current memory leak: -41.66 B/s (using 54 data points, chi2=0.05)
[2025-06-04 17:25:37] 2025-06-04 15:25:17,795 | INFO     | ..............................
[2025-06-04 17:25:37] 2025-06-04 15:25:17,795 | INFO     | . Timing measurements:
[2025-06-04 17:25:37] 2025-06-04 15:25:17,795 | INFO     | . get job = 0 s
[2025-06-04 17:25:37] 2025-06-04 15:25:17,795 | INFO     | . initial setup = 1 s
[2025-06-04 17:25:37] 2025-06-04 15:25:17,795 | INFO     | . payload setup = 4 s
[2025-06-04 17:25:37] 2025-06-04 15:25:17,795 | INFO     | . stage-in = 0 s
[2025-06-04 17:25:37] 2025-06-04 15:25:17,795 | INFO     | . payload execution = 3687 s
[2025-06-04 17:25:37] 2025-06-04 15:25:17,795 | INFO     | . stage-out = 0 s
[2025-06-04 17:25:37] 2025-06-04 15:25:17,795 | INFO     | . log creation = 0 s
[2025-06-04 17:25:37] 2025-06-04 15:25:17,795 | INFO     | ..............................
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | 
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | job summary report
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | --------------------------------------------------
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | PanDA job id: 6678246823
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | task id: 45006595
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | errors: (none)
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | pilot state: finished 
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | transexitcode: 0
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | exeerrorcode: 0
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | exeerrordiag: 
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | exitcode: 0
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | exitmsg: OK
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | cpuconsumptiontime: 13881 s
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | nevents: 400
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | neventsw: 0
[2025-06-04 17:25:37] 2025-06-04 15:25:17,835 | INFO     | pid: 691235
[2025-06-04 17:25:37] 2025-06-04 15:25:17,836 | INFO     | pgrp: 691235
[2025-06-04 17:25:37] 2025-06-04 15:25:17,836 | INFO     | corecount: 4
[2025-06-04 17:25:37] 2025-06-04 15:25:17,836 | INFO     | event service: False
[2025-06-04 17:25:37] 2025-06-04 15:25:17,836 | INFO     | sizes: {0: 2397345, 3: 2397551, 10: 2397579, 3696: 2432260, 3698: 2432260, 3704: 2432430}
[2025-06-04 17:25:37] 2025-06-04 15:25:17,836 | INFO     | --------------------------------------------------
[2025-06-04 17:25:37] 2025-06-04 15:25:17,836 | INFO     | 
[2025-06-04 17:25:37] 2025-06-04 15:25:17,836 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,853 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 17:25:37] 2025-06-04 15:25:17,854 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,854 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 17:25:37] 2025-06-04 15:25:17,854 | INFO     | job 6678246823 has completed (purged errors)
[2025-06-04 17:25:37] 2025-06-04 15:25:17,854 | INFO     | overall cleanup function is called
[2025-06-04 17:25:37] 2025-06-04 15:25:18,860 | INFO     | --- collectZombieJob: --- 10, [691235]
[2025-06-04 17:25:37] 2025-06-04 15:25:18,861 | INFO     | zombie collector waiting for pid 691235
[2025-06-04 17:25:37] 2025-06-04 15:25:18,861 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 17:25:37] 2025-06-04 15:25:18,861 | INFO     | collected zombie processes
[2025-06-04 17:25:37] 2025-06-04 15:25:18,861 | INFO     | will attempt to kill all subprocesses of pid=691235
[2025-06-04 17:25:37] 2025-06-04 15:25:18,906 | INFO     | process IDs to be killed: [691235] (in reverse order)
[2025-06-04 17:25:37] 2025-06-04 15:25:18,938 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 17:25:37] 2025-06-04 15:25:18,938 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 17:25:37] 2025-06-04 15:25:18,939 | INFO     | did not find any defunct processes belonging to 691235
[2025-06-04 17:25:37] 2025-06-04 15:25:18,941 | INFO     | did not find any defunct processes belonging to 691235
[2025-06-04 17:25:37] 2025-06-04 15:25:18,941 | INFO     | ready for new job
[2025-06-04 17:25:37] 2025-06-04 15:25:18,941 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 17:25:37] 2025-06-04 15:25:18,941 | INFO     | **************************************
[2025-06-04 17:25:37] 2025-06-04 15:25:18,942 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 17:25:37] 2025-06-04 15:25:18,942 | INFO     | **************************************
[2025-06-04 17:25:37] 2025-06-04 15:25:18,942 | INFO     | 
[2025-06-04 17:25:37] 2025-06-04 15:25:18,942 | INFO     | architecture information:
[2025-06-04 17:25:37] 2025-06-04 15:25:18,942 | INFO     | executing command: cat /etc/os-release
[2025-06-04 17:25:37] 2025-06-04 15:25:18,955 | INFO     | cat /etc/os-release:
[2025-06-04 17:25:37] NAME="CentOS Linux"
[2025-06-04 17:25:37] VERSION="7 (Core)"
[2025-06-04 17:25:37] ID="centos"
[2025-06-04 17:25:37] ID_LIKE="rhel fedora"
[2025-06-04 17:25:37] VERSION_ID="7"
[2025-06-04 17:25:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 17:25:37] ANSI_COLOR="0;31"
[2025-06-04 17:25:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 17:25:37] HOME_URL="https://www.centos.org/"
[2025-06-04 17:25:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 17:25:37] 
[2025-06-04 17:25:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 17:25:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 17:25:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 17:25:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 17:25:37] 
[2025-06-04 17:25:37] 2025-06-04 15:25:18,956 | INFO     | **************************************
[2025-06-04 17:25:37] 2025-06-04 15:25:19,459 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 17:25:37] 2025-06-04 15:25:19,476 | INFO     | sufficient remaining disk space (223733612544 B)
[2025-06-04 17:25:37] 2025-06-04 15:25:19,477 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 17:25:37] 2025-06-04 15:25:19,477 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 17:25:37] 2025-06-04 15:25:19,477 | INFO     | update_server=False
[2025-06-04 17:25:37] 2025-06-04 15:25:19,477 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 17:25:37] 2025-06-04 15:25:19,477 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 17:25:37] 2025-06-04 15:25:19,477 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 17:25:37] 2025-06-04 15:25:19,477 | INFO     | aborting loop
[2025-06-04 17:25:37] 2025-06-04 15:25:19,477 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 17:25:37] 2025-06-04 15:25:19,477 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 17:25:37] 2025-06-04 15:25:19,478 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 17:25:37] 2025-06-04 15:25:19,478 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 17:25:37] 2025-06-04 15:25:20,144 | INFO     | all payload control threads have been joined
[2025-06-04 17:25:37] 2025-06-04 15:25:20,198 | INFO     | all data control threads have been joined
[2025-06-04 17:25:37] 2025-06-04 15:25:20,265 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 17:25:37] 2025-06-04 15:25:20,482 | INFO     | [job] retrieve thread has finished
[2025-06-04 17:25:37] 2025-06-04 15:25:20,483 | INFO     | [job] queue monitor thread has finished
[2025-06-04 17:25:37] 2025-06-04 15:25:20,483 | INFO     | [job] job monitor thread has finished
[2025-06-04 17:25:37] 2025-06-04 15:25:20,490 | INFO     | all job control threads have been joined
[2025-06-04 17:25:37] 2025-06-04 15:25:20,765 | INFO     | [payload] failed_post thread has finished
[2025-06-04 17:25:37] 2025-06-04 15:25:20,787 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 17:25:37] 2025-06-04 15:25:20,944 | INFO     | [job] validate thread has finished
[2025-06-04 17:25:37] 2025-06-04 15:25:21,087 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 17:25:37] 2025-06-04 15:25:21,150 | INFO     | [payload] control thread has finished
[2025-06-04 17:25:37] 2025-06-04 15:25:21,167 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 17:25:37] 2025-06-04 15:25:21,204 | INFO     | [data] control thread has finished
[2025-06-04 17:25:37] 2025-06-04 15:25:21,489 | INFO     | [data] copytool_in thread has finished
[2025-06-04 17:25:37] 2025-06-04 15:25:21,495 | INFO     | [job] control thread has finished
[2025-06-04 17:25:37] 2025-06-04 15:25:21,529 | INFO     | [payload] validate_post thread has finished
[2025-06-04 17:25:37] 2025-06-04 15:25:22,248 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 17:25:37] 2025-06-04 15:25:22,271 | INFO     | [data] copytool_out thread has finished
[2025-06-04 17:25:37] 2025-06-04 15:25:26,255 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 17:25:37] 2025-06-04 15:25:29,643 | INFO     | job.realtimelogging is not enabled
[2025-06-04 17:25:37] 2025-06-04 15:25:30,649 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 17:25:37] 2025-06-04 15:25:32,439 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139860580550464)>', '<ExcThread(monitor, started 139859561801472)>']
[2025-06-04 17:25:37] 2025-06-04 15:25:32,548 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 17:25:37] 2025-06-04 15:25:32,548 | INFO     | [monitor] control thread has ended
[2025-06-04 17:25:37] 2025-06-04 15:25:37,464 | INFO     | all workflow threads have been joined
[2025-06-04 17:25:37] 2025-06-04 15:25:37,464 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 17:25:37] 2025-06-04 15:25:37,465 | INFO     | traces error code: 0
[2025-06-04 17:25:37] 2025-06-04 15:25:37,465 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 17:25:37] 2025-06-04 15:25:37,534 [wrapper] ==== pilot stdout END ====
[2025-06-04 17:25:37] 2025-06-04 15:25:37,538 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 17:25:37] 2025-06-04 15:25:37,542 [wrapper] pilotpid: 684597
[2025-06-04 17:25:37] 2025-06-04 15:25:37,546 [wrapper] Pilot exit status: 0
[2025-06-04 17:25:37] 2025-06-04 15:25:37,558 [wrapper] pandaids: 6678246823
[2025-06-04 17:25:37] 2025-06-04 15:25:37,579 [wrapper] cleanup supervisor_pilot  700868 684598
[2025-06-04 17:25:37] 2025-06-04 15:25:37,583 [wrapper] Test setup, not cleaning
[2025-06-04 17:25:37] 2025-06-04 15:25:37,587 [wrapper] apfmon messages muted
[2025-06-04 17:25:37] 2025-06-04 15:25:37,590 [wrapper] ==== wrapper stdout END ====
[2025-06-04 17:25:37] 2025-06-04 15:25:37,594 [wrapper] ==== wrapper stderr END ====
[2025-06-04 17:25:37]  *** Error codes and diagnostics ***
[2025-06-04 17:25:37]     "exeErrorCode": 0,
[2025-06-04 17:25:37]     "exeErrorDiag": "",
[2025-06-04 17:25:37]     "pilotErrorCode": 0,
[2025-06-04 17:25:37]     "pilotErrorDiag": "",
[2025-06-04 17:25:37]  *** Listing of results directory ***
[2025-06-04 17:25:37] total 384328
[2025-06-04 17:25:37] -rw-r--r-- 1 boinc boinc    495897 Jun  4 03:59 pilot3.tar.gz
[2025-06-04 17:25:37] -rw-r--r-- 1 boinc boinc      5111 Jun  4 04:05 queuedata.json
[2025-06-04 17:25:37] -rwx------ 1 boinc boinc     37140 Jun  4 04:05 runpilot2-wrapper.sh
[2025-06-04 17:25:37] -rw-r--r-- 1 boinc boinc       100 Jun  4 16:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 17:25:37] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 16:23 run_atlas
[2025-06-04 17:25:37] -rw-r--r-- 1 boinc boinc       105 Jun  4 16:23 job.xml
[2025-06-04 17:25:37] -rw-r--r-- 2 boinc boinc 214098452 Jun  4 16:23 EVNT.45006593._002011.pool.root.1
[2025-06-04 17:25:37] -rw-r--r-- 1 boinc boinc      6853 Jun  4 16:23 init_data.xml
[2025-06-04 17:25:37] drwxrwx--x 2 boinc boinc      4096 Jun  4 16:23 shared
[2025-06-04 17:25:37] -rw-r--r-- 2 boinc boinc    508884 Jun  4 16:23 input.tar.gz
[2025-06-04 17:25:37] -rw-r--r-- 2 boinc boinc     15093 Jun  4 16:23 start_atlas.sh
[2025-06-04 17:25:37] -rw-r--r-- 1 boinc boinc         0 Jun  4 16:23 boinc_lockfile
[2025-06-04 17:25:37] -rw-r--r-- 1 boinc boinc      2525 Jun  4 16:23 pandaJob.out
[2025-06-04 17:25:37] -rw------- 1 boinc boinc    986819 Jun  4 16:23 agis_schedconf.cvmfs.json
[2025-06-04 17:25:37] -rw------- 1 boinc boinc   1598969 Jun  4 16:23 agis_ddmendpoints.agis.ALL.json
[2025-06-04 17:25:37] drwx------ 4 boinc boinc      4096 Jun  4 16:23 pilot3
[2025-06-04 17:25:37] -rw------- 1 boinc boinc        95 Jun  4 17:24 pilot_heartbeat.json
[2025-06-04 17:25:37] -rw------- 1 boinc boinc 174426120 Jun  4 17:24 HITS.45006595._050151.pool.root.1
[2025-06-04 17:25:37] -rw-r--r-- 1 boinc boinc       529 Jun  4 17:24 boinc_task_state.xml
[2025-06-04 17:25:37] -rw------- 1 boinc boinc      1021 Jun  4 17:25 memory_monitor_summary.json
[2025-06-04 17:25:37] -rw------- 1 boinc boinc    224039 Jun  4 17:25 log.45006595._050151.job.log.tgz.1
[2025-06-04 17:25:37] -rw------- 1 boinc boinc      7652 Jun  4 17:25 heartbeat.json
[2025-06-04 17:25:37] -rw-r--r-- 1 boinc boinc      8192 Jun  4 17:25 boinc_mmap_file
[2025-06-04 17:25:37] -rw-r--r-- 1 boinc boinc        27 Jun  4 17:25 wrapper_checkpoint.txt
[2025-06-04 17:25:37] -rw------- 1 boinc boinc      4552 Jun  4 17:25 pilotlog.txt
[2025-06-04 17:25:37] -rw------- 1 boinc boinc    374086 Jun  4 17:25 log.45006595._050151.job.log.1
[2025-06-04 17:25:37] -rw------- 1 boinc boinc       357 Jun  4 17:25 output.list
[2025-06-04 17:25:37] -rw-r--r-- 1 boinc boinc       620 Jun  4 17:25 runtime_log
[2025-06-04 17:25:37] -rw------- 1 boinc boinc    614400 Jun  4 17:25 result.tar.gz
[2025-06-04 17:25:37] -rw-r--r-- 1 boinc boinc      8733 Jun  4 17:25 runtime_log.err
[2025-06-04 17:25:37] -rw------- 1 boinc boinc       658 Jun  4 17:25 GGANDmegsg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm5UaKDmS5jqlm.diag
[2025-06-04 17:25:37] -rw-r--r-- 1 boinc boinc     21640 Jun  4 17:25 stderr.txt
[2025-06-04 17:25:37] HITS file was successfully produced:
[2025-06-04 17:25:37] -rw------- 1 boinc boinc 174426120 Jun  4 17:24 shared/HITS.pool.root.1
[2025-06-04 17:25:37]  *** Contents of shared directory: ***
[2025-06-04 17:25:37] total 380548
[2025-06-04 17:25:37] -rw-r--r-- 2 boinc boinc 214098452 Jun  4 16:23 ATLAS.root_0
[2025-06-04 17:25:37] -rw-r--r-- 2 boinc boinc    508884 Jun  4 16:23 input.tar.gz
[2025-06-04 17:25:37] -rw-r--r-- 2 boinc boinc     15093 Jun  4 16:23 start_atlas.sh
[2025-06-04 17:25:37] -rw------- 1 boinc boinc 174426120 Jun  4 17:24 HITS.pool.root.1
[2025-06-04 17:25:37] -rw------- 1 boinc boinc    614400 Jun  4 17:25 result.tar.gz
17:25:38 (680895): run_atlas exited; CPU time 13890.378233
17:25:38 (680895): called boinc_finish(0)

</stderr_txt>
]]>

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