Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:16:07 (2244810): wrapper (7.7.26015): starting
05:16:07 (2244810): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 05:16:07] Arguments: --nthreads 12
[2025-06-04 05:16:07] Threads: 12
[2025-06-04 05:16:07] Checking for CVMFS
[2025-06-04 05:16:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 05:16:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 05:16:07] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 05:16:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 05:16:07] 2.12.6.0 4996 558 83336 146773 1 69 27156578 32935936 14198 16776704 0 1668770 99.416 2705214 31607 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 05:16:07] CVMFS is ok
[2025-06-04 05:16:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 05:16:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 05:16:07] Further information can be found at the LHC@home message board.
[2025-06-04 05:16:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:16:07] Checking for apptainer binary...
[2025-06-04 05:16:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 05:16:07] Running /usr/bin/apptainer --version
[2025-06-04 05:16:07] apptainer version 1.4.0-1.el9
[2025-06-04 05:16:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 05:16:08] c6-5-7-3.aglt2.org
[2025-06-04 05:16:08] apptainer works
[2025-06-04 05:16:08] Set ATHENA_PROC_NUMBER=12
[2025-06-04 05:16:08] Set ATHENA_CORE_NUMBER=12
[2025-06-04 05:16:08] Starting ATLAS job with PandaID=6677440335
[2025-06-04 05:16:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:16:31]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:16:31] 2025-06-04 12:16:15,983 | INFO     | extracted standard info from prmon json
[2025-06-04 08:16:31] 2025-06-04 12:16:15,983 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:16:31] 2025-06-04 12:16:15,983 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:16:31] 2025-06-04 12:16:15,984 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:16:31] 2025-06-04 12:16:15,984 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:16:31] 2025-06-04 12:16:15,987 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:16:31] 2025-06-04 12:16:15,988 | INFO     | sum of square deviations: 1690371594.4943168
[2025-06-04 08:16:31] 2025-06-04 12:16:15,988 | INFO     | sum of deviations: 1785174055.3750381
[2025-06-04 08:16:31] 2025-06-04 12:16:15,993 | INFO     | mean x: 1749034012.8806818
[2025-06-04 08:16:31] 2025-06-04 12:16:15,993 | INFO     | mean y: 2355668.875
[2025-06-04 08:16:31] 2025-06-04 12:16:15,993 | INFO     | -- intersect: -1844770816.172889
[2025-06-04 08:16:31] 2025-06-04 12:16:15,993 | INFO     | intersect: -1844770816.172889
[2025-06-04 08:16:31] 2025-06-04 12:16:15,993 | INFO     | chi2: 5.015555740017859
[2025-06-04 08:16:31] 2025-06-04 12:16:15,993 | INFO     | sum of square deviations: 1550370798.7485342
[2025-06-04 08:16:31] 2025-06-04 12:16:15,994 | INFO     | sum of deviations: 12834563501.011698
[2025-06-04 08:16:31] 2025-06-04 12:16:15,994 | INFO     | mean x: 1749033860.3918128
[2025-06-04 08:16:31] 2025-06-04 12:16:15,994 | INFO     | mean y: 2367432.865497076
[2025-06-04 08:16:31] 2025-06-04 12:16:15,994 | INFO     | -- intersect: -14476805010.745115
[2025-06-04 08:16:31] 2025-06-04 12:16:15,994 | INFO     | intersect: -14476805010.745115
[2025-06-04 08:16:31] 2025-06-04 12:16:15,995 | INFO     | chi2: 4.385829366984925
[2025-06-04 08:16:31] 2025-06-04 12:16:15,995 | INFO     | current chi2=4.385829366984925 (change=12.55546554908174 %)
[2025-06-04 08:16:31] 2025-06-04 12:16:15,995 | INFO     | right removable region: 170
[2025-06-04 08:16:31] 2025-06-04 12:16:15,995 | INFO     | sum of square deviations: 1550329928.7485342
[2025-06-04 08:16:31] 2025-06-04 12:16:15,996 | INFO     | sum of deviations: -40167598500.7427
[2025-06-04 08:16:31] 2025-06-04 12:16:15,996 | INFO     | mean x: 1749034165.3918128
[2025-06-04 08:16:31] 2025-06-04 12:16:15,996 | INFO     | mean y: 2401181.0409356724
[2025-06-04 08:16:31] 2025-06-04 12:16:15,996 | INFO     | -- intersect: 45318240614.16803
[2025-06-04 08:16:31] 2025-06-04 12:16:15,996 | INFO     | intersect: 45318240614.16803
[2025-06-04 08:16:31] 2025-06-04 12:16:16,001 | INFO     | chi2: 2.2203757872050467
[2025-06-04 08:16:31] 2025-06-04 12:16:16,001 | INFO     | current chi2=2.2203757872050467 (change=55.730214111883434 %)
[2025-06-04 08:16:31] 2025-06-04 12:16:16,001 | INFO     | sum of square deviations: 1418241900.457839
[2025-06-04 08:16:31] 2025-06-04 12:16:16,002 | INFO     | sum of deviations: -65423586507.36144
[2025-06-04 08:16:31] 2025-06-04 12:16:16,002 | INFO     | mean x: 1749034317.9036145
[2025-06-04 08:16:31] 2025-06-04 12:16:16,002 | INFO     | mean y: 2430305.6024096385
[2025-06-04 08:16:31] 2025-06-04 12:16:16,002 | INFO     | -- intersect: 80685491470.81773
[2025-06-04 08:16:31] 2025-06-04 12:16:16,002 | INFO     | intersect: 80685491470.81773
[2025-06-04 08:16:31] 2025-06-04 12:16:16,002 | INFO     | chi2: 1.1633004405249303
[2025-06-04 08:16:31] 2025-06-04 12:16:16,002 | INFO     | current chi2=1.1633004405249303 (change=47.60794784250175 %)
[2025-06-04 08:16:31] 2025-06-04 12:16:16,002 | INFO     | sum of square deviations: 1293874947.1180122
[2025-06-04 08:16:31] 2025-06-04 12:16:16,003 | INFO     | sum of deviations: -65794887597.95659
[2025-06-04 08:16:31] 2025-06-04 12:16:16,003 | INFO     | mean x: 1749034470.4161491
[2025-06-04 08:16:31] 2025-06-04 12:16:16,003 | INFO     | mean y: 2430602.5217391304
[2025-06-04 08:16:31] 2025-06-04 12:16:16,003 | INFO     | -- intersect: 88942653645.17876
[2025-06-04 08:16:31] 2025-06-04 12:16:16,003 | INFO     | intersect: 88942653645.17876
[2025-06-04 08:16:31] 2025-06-04 12:16:16,003 | INFO     | chi2: 1.0481372046216597
[2025-06-04 08:16:31] 2025-06-04 12:16:16,004 | INFO     | current chi2=1.0481372046216597 (change=9.899698469236725 %)
[2025-06-04 08:16:31] 2025-06-04 12:16:16,004 | INFO     | left removable region: 30
[2025-06-04 08:16:31] 2025-06-04 12:16:16,004 | INFO     | sum of square deviations: 850705916.1357135
[2025-06-04 08:16:31] 2025-06-04 12:16:16,004 | INFO     | sum of deviations: -34089557585.02858
[2025-06-04 08:16:31] 2025-06-04 12:16:16,004 | INFO     | mean x: 1749034744.9214287
[2025-06-04 08:16:31] 2025-06-04 12:16:16,004 | INFO     | mean y: 2417138.5428571426
[2025-06-04 08:16:31] 2025-06-04 12:16:16,004 | INFO     | -- intersect: 70089881589.30496
[2025-06-04 08:16:31] 2025-06-04 12:16:16,004 | INFO     | intersect: 70089881589.30496
[2025-06-04 08:16:31] 2025-06-04 12:16:16,005 | INFO     | chi2: 0.3292409856118805
[2025-06-04 08:16:31] 2025-06-04 12:16:16,005 | INFO     | -- intersect: 70089881589.30496
[2025-06-04 08:16:31] 2025-06-04 12:16:16,005 | INFO     | current memory leak: -40.07 B/s (using 140 data points, chi2=0.33)
[2025-06-04 08:16:31] 2025-06-04 12:16:16,005 | INFO     | ..............................
[2025-06-04 08:16:31] 2025-06-04 12:16:16,005 | INFO     | . Timing measurements:
[2025-06-04 08:16:31] 2025-06-04 12:16:16,005 | INFO     | . get job = 0 s
[2025-06-04 08:16:31] 2025-06-04 12:16:16,006 | INFO     | . initial setup = 4 s
[2025-06-04 08:16:31] 2025-06-04 12:16:16,006 | INFO     | . payload setup = 29 s
[2025-06-04 08:16:31] 2025-06-04 12:16:16,006 | INFO     | . stage-in = 0 s
[2025-06-04 08:16:31] 2025-06-04 12:16:16,006 | INFO     | . payload execution = 10701 s
[2025-06-04 08:16:31] 2025-06-04 12:16:16,006 | INFO     | . stage-out = 1 s
[2025-06-04 08:16:31] 2025-06-04 12:16:16,006 | INFO     | . log creation = 0 s
[2025-06-04 08:16:31] 2025-06-04 12:16:16,006 | INFO     | ..............................
[2025-06-04 08:16:31] 2025-06-04 12:16:16,169 | INFO     | 
[2025-06-04 08:16:31] 2025-06-04 12:16:16,169 | INFO     | job summary report
[2025-06-04 08:16:31] 2025-06-04 12:16:16,169 | INFO     | --------------------------------------------------
[2025-06-04 08:16:31] 2025-06-04 12:16:16,169 | INFO     | PanDA job id: 6677440335
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | task id: 45006595
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | errors: (none)
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | pilot state: finished 
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | transexitcode: 0
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | exeerrorcode: 0
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | exeerrordiag: 
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | exitcode: 0
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | exitmsg: OK
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | cpuconsumptiontime: 37439 s
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | nevents: 400
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | neventsw: 0
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | pid: 2261176
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | pgrp: 2261176
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | corecount: 12
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | event service: False
[2025-06-04 08:16:31] 2025-06-04 12:16:16,170 | INFO     | sizes: {0: 2404354, 1: 2405210, 2: 2405210, 9: 2405444, 12: 2405472, 10735: 2434310, 10736: 2443251, 10738: 2443307, 10753: 2443477}
[2025-06-04 08:16:31] 2025-06-04 12:16:16,171 | INFO     | --------------------------------------------------
[2025-06-04 08:16:31] 2025-06-04 12:16:16,171 | INFO     | 
[2025-06-04 08:16:31] 2025-06-04 12:16:16,171 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 08:16:31] 2025-06-04 12:16:16,192 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,192 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,192 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,192 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,192 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,192 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,192 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,193 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,193 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,193 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,193 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,193 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,193 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,193 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,193 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,193 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,193 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,193 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:16:31] 2025-06-04 12:16:16,193 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,193 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:16:31] 2025-06-04 12:16:16,193 | INFO     | job 6677440335 has completed (purged errors)
[2025-06-04 08:16:31] 2025-06-04 12:16:16,194 | INFO     | overall cleanup function is called
[2025-06-04 08:16:31] 2025-06-04 12:16:17,205 | INFO     | --- collectZombieJob: --- 10, [2261176]
[2025-06-04 08:16:31] 2025-06-04 12:16:17,206 | INFO     | zombie collector waiting for pid 2261176
[2025-06-04 08:16:31] 2025-06-04 12:16:17,206 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:16:31] 2025-06-04 12:16:17,206 | INFO     | collected zombie processes
[2025-06-04 08:16:31] 2025-06-04 12:16:17,206 | INFO     | will attempt to kill all subprocesses of pid=2261176
[2025-06-04 08:16:31] 2025-06-04 12:16:17,429 | INFO     | process IDs to be killed: [2261176] (in reverse order)
[2025-06-04 08:16:31] 2025-06-04 12:16:17,510 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:16:31] 2025-06-04 12:16:17,510 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:16:31] 2025-06-04 12:16:17,520 | INFO     | did not find any defunct processes belonging to 2261176
[2025-06-04 08:16:31] 2025-06-04 12:16:17,530 | INFO     | did not find any defunct processes belonging to 2261176
[2025-06-04 08:16:31] 2025-06-04 12:16:17,530 | INFO     | ready for new job
[2025-06-04 08:16:31] 2025-06-04 12:16:17,530 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:16:31] 2025-06-04 12:16:17,532 | INFO     | **************************************
[2025-06-04 08:16:31] 2025-06-04 12:16:17,532 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 08:16:31] 2025-06-04 12:16:17,532 | INFO     | **************************************
[2025-06-04 08:16:31] 2025-06-04 12:16:17,532 | INFO     | 
[2025-06-04 08:16:31] 2025-06-04 12:16:17,548 | INFO     | architecture information:
[2025-06-04 08:16:31] 2025-06-04 12:16:17,548 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:16:31] 2025-06-04 12:16:17,565 | INFO     | cat /etc/os-release:
[2025-06-04 08:16:31] NAME="CentOS Linux"
[2025-06-04 08:16:31] VERSION="7 (Core)"
[2025-06-04 08:16:31] ID="centos"
[2025-06-04 08:16:31] ID_LIKE="rhel fedora"
[2025-06-04 08:16:31] VERSION_ID="7"
[2025-06-04 08:16:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:16:31] ANSI_COLOR="0;31"
[2025-06-04 08:16:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:16:31] HOME_URL="https://www.centos.org/"
[2025-06-04 08:16:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:16:31] 
[2025-06-04 08:16:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:16:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:16:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:16:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:16:31] 
[2025-06-04 08:16:31] 2025-06-04 12:16:17,565 | INFO     | **************************************
[2025-06-04 08:16:31] 2025-06-04 12:16:18,069 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 08:16:31] 2025-06-04 12:16:18,111 | INFO     | sufficient remaining disk space (76369887232 B)
[2025-06-04 08:16:31] 2025-06-04 12:16:18,111 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:16:31] 2025-06-04 12:16:18,112 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:16:31] 2025-06-04 12:16:18,112 | INFO     | update_server=False
[2025-06-04 08:16:31] 2025-06-04 12:16:18,112 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:16:31] 2025-06-04 12:16:18,112 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:16:31] 2025-06-04 12:16:18,112 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:16:31] 2025-06-04 12:16:18,112 | INFO     | aborting loop
[2025-06-04 08:16:31] 2025-06-04 12:16:18,120 | INFO     | all job control threads have been joined
[2025-06-04 08:16:31] 2025-06-04 12:16:18,566 | INFO     | all payload control threads have been joined
[2025-06-04 08:16:31] 2025-06-04 12:16:19,118 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:16:31] 2025-06-04 12:16:19,122 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:16:31] 2025-06-04 12:16:19,135 | INFO     | all data control threads have been joined
[2025-06-04 08:16:31] 2025-06-04 12:16:19,136 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:16:31] 2025-06-04 12:16:19,136 | INFO     | [job] control thread has finished
[2025-06-04 08:16:31] 2025-06-04 12:16:19,227 | INFO     | PID=2248413 has CPU usage=10.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 08:16:31] 2025-06-04 12:16:19,227 | INFO     | .. there are 15 such processes running
[2025-06-04 08:16:31] 2025-06-04 12:16:19,227 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:16:31] 2025-06-04 12:16:19,228 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:16:31] 2025-06-04 12:16:19,228 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:16:31] 2025-06-04 12:16:19,249 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:16:31] 2025-06-04 12:16:19,266 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:16:31] 2025-06-04 12:16:19,328 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:16:31] 2025-06-04 12:16:19,442 | INFO     | [job] validate thread has finished
[2025-06-04 08:16:31] 2025-06-04 12:16:19,560 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:16:31] 2025-06-04 12:16:19,572 | INFO     | [payload] control thread has finished
[2025-06-04 08:16:31] 2025-06-04 12:16:19,903 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:16:31] 2025-06-04 12:16:20,092 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:16:31] 2025-06-04 12:16:20,092 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:16:31] 2025-06-04 12:16:20,141 | INFO     | [data] control thread has finished
[2025-06-04 08:16:31] 2025-06-04 12:16:20,465 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:16:31] 2025-06-04 12:16:20,468 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:16:31] 2025-06-04 12:16:21,256 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:16:31] 2025-06-04 12:16:24,477 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:16:31] 2025-06-04 12:16:25,410 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140408526808896)>', '<ExcThread(monitor, started 140408050939648)>']
[2025-06-04 08:16:31] 2025-06-04 12:16:26,268 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:16:31] 2025-06-04 12:16:26,269 | INFO     | [monitor] control thread has ended
[2025-06-04 08:16:31] 2025-06-04 12:16:30,436 | INFO     | all workflow threads have been joined
[2025-06-04 08:16:31] 2025-06-04 12:16:30,437 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:16:31] 2025-06-04 12:16:30,437 | INFO     | traces error code: 0
[2025-06-04 08:16:31] 2025-06-04 12:16:30,437 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:16:31] 2025-06-04 12:16:30,813 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:16:31] 2025-06-04 12:16:30,821 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:16:31] 2025-06-04 12:16:30,824 [wrapper] pilotpid: 2248413
[2025-06-04 08:16:31] 2025-06-04 12:16:30,829 [wrapper] Pilot exit status: 0
[2025-06-04 08:16:31] 2025-06-04 12:16:30,885 [wrapper] pandaids: 6677440335
[2025-06-04 08:16:31] 2025-06-04 12:16:30,975 [wrapper] cleanup supervisor_pilot 2638014 2248414
[2025-06-04 08:16:31] 2025-06-04 12:16:31,002 [wrapper] Test setup, not cleaning
[2025-06-04 08:16:31] 2025-06-04 12:16:31,022 [wrapper] apfmon messages muted
[2025-06-04 08:16:31] 2025-06-04 12:16:31,025 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:16:31] 2025-06-04 12:16:31,028 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:16:31]  *** Error codes and diagnostics ***
[2025-06-04 08:16:31]     "exeErrorCode": 0,
[2025-06-04 08:16:31]     "exeErrorDiag": "",
[2025-06-04 08:16:31]     "pilotErrorCode": 0,
[2025-06-04 08:16:31]     "pilotErrorDiag": "",
[2025-06-04 08:16:31]  *** Listing of results directory ***
[2025-06-04 08:16:31] total 392624
[2025-06-04 08:16:31] -rw-r--r--. 1 boincer umatlas    495897 Jun  2 20:19 pilot3.tar.gz
[2025-06-04 08:16:31] -rw-r--r--. 1 boincer umatlas      5111 Jun  2 20:24 queuedata.json
[2025-06-04 08:16:31] -rwx------. 1 boincer umatlas     37140 Jun  2 20:27 runpilot2-wrapper.sh
[2025-06-04 08:16:31] -rw-r--r--. 1 boincer umatlas       100 Jun  4 05:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:16:31] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 05:16 run_atlas
[2025-06-04 08:16:31] -rw-r--r--. 1 boincer umatlas       105 Jun  4 05:16 job.xml
[2025-06-04 08:16:31] -rw-r--r--. 2 boincer umatlas 214594425 Jun  4 05:16 EVNT.45006593._000606.pool.root.1
[2025-06-04 08:16:31] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 05:16 shared
[2025-06-04 08:16:31] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 05:16 input.tar.gz
[2025-06-04 08:16:31] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 05:16 start_atlas.sh
[2025-06-04 08:16:31] -rw-r--r--. 1 boincer umatlas         0 Jun  4 05:16 boinc_lockfile
[2025-06-04 08:16:31] -rw-r--r--. 1 boincer umatlas      2524 Jun  4 05:16 pandaJob.out
[2025-06-04 08:16:31] -rw-------. 1 boincer umatlas    986774 Jun  4 05:16 agis_schedconf.cvmfs.json
[2025-06-04 08:16:31] -rw-------. 1 boincer umatlas   1603667 Jun  4 05:16 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:16:31] drwx------. 4 boincer umatlas      4096 Jun  4 05:16 pilot3
[2025-06-04 08:16:31] -rw-r--r--. 1 boincer umatlas      6840 Jun  4 08:12 init_data.xml
[2025-06-04 08:16:31] -rw-------. 1 boincer umatlas 180956891 Jun  4 08:15 HITS.45006595._015140.pool.root.1
[2025-06-04 08:16:31] -rw-r--r--. 1 boincer umatlas       531 Jun  4 08:15 boinc_task_state.xml
[2025-06-04 08:16:31] -rw-------. 1 boincer umatlas        95 Jun  4 08:15 pilot_heartbeat.json
[2025-06-04 08:16:31] -rw-------. 1 boincer umatlas      1035 Jun  4 08:15 memory_monitor_summary.json
[2025-06-04 08:16:31] -rw-------. 1 boincer umatlas    418799 Jun  4 08:15 log.45006595._015140.job.log.tgz.1
[2025-06-04 08:16:31] -rw-------. 1 boincer umatlas      7719 Jun  4 08:16 heartbeat.json
[2025-06-04 08:16:31] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 08:16 boinc_mmap_file
[2025-06-04 08:16:31] -rw-r--r--. 1 boincer umatlas        28 Jun  4 08:16 wrapper_checkpoint.txt
[2025-06-04 08:16:31] -rw-------. 1 boincer umatlas      4749 Jun  4 08:16 pilotlog.txt
[2025-06-04 08:16:31] -rw-------. 1 boincer umatlas    912130 Jun  4 08:16 log.45006595._015140.job.log.1
[2025-06-04 08:16:31] -rw-------. 1 boincer umatlas       357 Jun  4 08:16 output.list
[2025-06-04 08:16:31] -rw-r--r--. 1 boincer umatlas       620 Jun  4 08:16 runtime_log
[2025-06-04 08:16:31] -rw-------. 1 boincer umatlas   1351680 Jun  4 08:16 result.tar.gz
[2025-06-04 08:16:31] -rw-r--r--. 1 boincer umatlas      8662 Jun  4 08:16 runtime_log.err
[2025-06-04 08:16:31] -rw-------. 1 boincer umatlas       655 Jun  4 08:16 OHxLDmjfUg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmTxWKDm3ow8zn.diag
[2025-06-04 08:16:31] -rw-r--r--. 1 boincer umatlas     20966 Jun  4 08:16 stderr.txt
[2025-06-04 08:16:31] HITS file was successfully produced:
[2025-06-04 08:16:31] -rw-------. 1 boincer umatlas 180956891 Jun  4 08:15 shared/HITS.pool.root.1
[2025-06-04 08:16:31]  *** Contents of shared directory: ***
[2025-06-04 08:16:31] total 388124
[2025-06-04 08:16:31] -rw-r--r--. 2 boincer umatlas 214594425 Jun  4 05:16 ATLAS.root_0
[2025-06-04 08:16:31] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 05:16 input.tar.gz
[2025-06-04 08:16:31] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 05:16 start_atlas.sh
[2025-06-04 08:16:31] -rw-------. 1 boincer umatlas 180956891 Jun  4 08:15 HITS.pool.root.1
[2025-06-04 08:16:31] -rw-------. 1 boincer umatlas   1351680 Jun  4 08:16 result.tar.gz
08:16:54 (2244810): run_atlas exited; CPU time 37662.318543
08:16:54 (2244810): called boinc_finish(0)

</stderr_txt>
]]>

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