Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:55:21 (10376): wrapper (7.7.26015): starting
17:55:21 (10376): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 17:55:21] Arguments: --nthreads 8
[2025-06-04 17:55:21] Threads: 8
[2025-06-04 17:55:21] Checking for CVMFS
[2025-06-04 17:55:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 17:55:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 17:55:22] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 17:55:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 17:55:23] 2.11.2.0 22848 33541 102116 146786 0 59 20376106 25165825 4295 130560 0 17986109 99.829 18380323 2530 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 17:55:23] CVMFS is ok
[2025-06-04 17:55:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 17:55:23] Checking for apptainer binary...
[2025-06-04 17:55:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 17:55:23] Running /usr/bin/apptainer --version
[2025-06-04 17:55:23] apptainer version 1.3.2-1.el7
[2025-06-04 17:55:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 18:06:10] cg-vwn482.simple-grid.lan
[2025-06-04 18:06:10] apptainer works
[2025-06-04 18:06:10] Set ATHENA_PROC_NUMBER=8
[2025-06-04 18:06:10] Set ATHENA_CORE_NUMBER=8
[2025-06-04 18:06:10] Starting ATLAS job with PandaID=6678156082
[2025-06-04 18:06:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 00:06:00]  *** The last 200 lines of the pilot log: ***
[2025-06-05 00:06:00] 2025-06-04 19:37:05,751 | INFO     | monitor loop #913: job 0:6678156082 is in state 'finished'
[2025-06-05 00:06:00] 2025-06-04 19:37:05,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 00:06:00] 2025-06-04 19:37:08,265 | INFO     | monitor loop #914: job 0:6678156082 is in state 'finished'
[2025-06-05 00:06:00] 2025-06-04 19:37:08,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 00:06:00] 2025-06-04 19:37:10,769 | INFO     | monitor loop #915: job 0:6678156082 is in state 'finished'
[2025-06-05 00:06:00] 2025-06-04 19:37:10,769 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 00:06:00] 2025-06-04 19:37:11,198 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 00:06:00] 2025-06-04 19:37:11,199 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6678156082/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 00:06:00] 2025-06-04 19:37:11,200 | INFO     | extracted standard info from prmon json
[2025-06-05 00:06:00] 2025-06-04 19:37:11,200 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 00:06:00] 2025-06-04 19:37:11,200 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 00:06:00] 2025-06-04 19:37:11,200 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 00:06:00] 2025-06-04 19:37:11,201 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 00:06:00] 2025-06-04 19:37:11,205 | INFO     | fitting pss+swap vs Time
[2025-06-05 00:06:00] 2025-06-04 19:37:11,206 | INFO     | sum of square deviations: 2406926989.5
[2025-06-05 00:06:00] 2025-06-04 19:37:11,209 | INFO     | sum of deviations: -14234025266.499994
[2025-06-05 00:06:00] 2025-06-04 19:37:11,209 | INFO     | mean x: 1749059744.5
[2025-06-05 00:06:00] 2025-06-04 19:37:11,209 | INFO     | mean y: 2525716.792929293
[2025-06-05 00:06:00] 2025-06-04 19:37:11,209 | INFO     | -- intersect: 10346071949.993296
[2025-06-05 00:06:00] 2025-06-04 19:37:11,209 | INFO     | intersect: 10346071949.993296
[2025-06-05 00:06:00] 2025-06-04 19:37:11,210 | INFO     | chi2: 1.7545743385880166
[2025-06-05 00:06:00] 2025-06-04 19:37:11,211 | INFO     | sum of square deviations: 2229146912.0
[2025-06-05 00:06:00] 2025-06-04 19:37:11,212 | INFO     | sum of deviations: -13481399977.000008
[2025-06-05 00:06:00] 2025-06-04 19:37:11,212 | INFO     | mean x: 1749059592.0
[2025-06-05 00:06:00] 2025-06-04 19:37:11,212 | INFO     | mean y: 2526362.5388601036
[2025-06-05 00:06:00] 2025-06-04 19:37:11,212 | INFO     | -- intersect: 10580461722.664843
[2025-06-05 00:06:00] 2025-06-04 19:37:11,212 | INFO     | intersect: 10580461722.664843
[2025-06-05 00:06:00] 2025-06-04 19:37:11,213 | INFO     | chi2: 1.753822671846446
[2025-06-05 00:06:00] 2025-06-04 19:37:11,213 | INFO     | current chi2=1.753822671846446 (change=0.04284040436699116 %)
[2025-06-05 00:06:00] 2025-06-04 19:37:11,213 | INFO     | right removable region: 192
[2025-06-05 00:06:00] 2025-06-04 19:37:11,213 | INFO     | sum of square deviations: 2229146912.0
[2025-06-05 00:06:00] 2025-06-04 19:37:11,215 | INFO     | sum of deviations: -46631713885.99999
[2025-06-05 00:06:00] 2025-06-04 19:37:11,215 | INFO     | mean x: 1749059897.0
[2025-06-05 00:06:00] 2025-06-04 19:37:11,215 | INFO     | mean y: 2553210.4922279795
[2025-06-05 00:06:00] 2025-06-04 19:37:11,215 | INFO     | -- intersect: 36591285988.63072
[2025-06-05 00:06:00] 2025-06-04 19:37:11,215 | INFO     | intersect: 36591285988.63072
[2025-06-05 00:06:00] 2025-06-04 19:37:11,215 | INFO     | chi2: 0.15948878910430708
[2025-06-05 00:06:00] 2025-06-04 19:37:11,216 | INFO     | current chi2=0.15948878910430708 (change=90.91011502922956 %)
[2025-06-05 00:06:00] 2025-06-04 19:37:11,216 | INFO     | sum of square deviations: 2060343747.0
[2025-06-05 00:06:00] 2025-06-04 19:37:11,218 | INFO     | sum of deviations: -45780072756.00001
[2025-06-05 00:06:00] 2025-06-04 19:37:11,218 | INFO     | mean x: 1749060049.5
[2025-06-05 00:06:00] 2025-06-04 19:37:11,218 | INFO     | mean y: 2552402.8936170214
[2025-06-05 00:06:00] 2025-06-04 19:37:11,218 | INFO     | -- intersect: 38866017024.90796
[2025-06-05 00:06:00] 2025-06-04 19:37:11,218 | INFO     | intersect: 38866017024.90796
[2025-06-05 00:06:00] 2025-06-04 19:37:11,218 | INFO     | chi2: 0.14422030088572263
[2025-06-05 00:06:00] 2025-06-04 19:37:11,218 | INFO     | current chi2=0.14422030088572263 (change=9.573392778472176 %)
[2025-06-05 00:06:00] 2025-06-04 19:37:11,218 | INFO     | left removable region: 20
[2025-06-05 00:06:00] 2025-06-04 19:37:11,219 | INFO     | sum of square deviations: 1577789583.0
[2025-06-05 00:06:00] 2025-06-04 19:37:11,220 | INFO     | sum of deviations: -35796988192.0
[2025-06-05 00:06:00] 2025-06-04 19:37:11,220 | INFO     | mean x: 1749060171.5
[2025-06-05 00:06:00] 2025-06-04 19:37:11,220 | INFO     | mean y: 2545493.0
[2025-06-05 00:06:00] 2025-06-04 19:37:11,220 | INFO     | -- intersect: 39685331449.308975
[2025-06-05 00:06:00] 2025-06-04 19:37:11,220 | INFO     | intersect: 39685331449.308975
[2025-06-05 00:06:00] 2025-06-04 19:37:11,221 | INFO     | chi2: 0.13758729454913235
[2025-06-05 00:06:00] 2025-06-04 19:37:11,221 | INFO     | -- intersect: 39685331449.308975
[2025-06-05 00:06:00] 2025-06-04 19:37:11,221 | INFO     | current memory leak: -22.69 B/s (using 172 data points, chi2=0.14)
[2025-06-05 00:06:00] 2025-06-04 19:37:11,222 | INFO     | ..............................
[2025-06-05 00:06:00] 2025-06-04 19:37:11,222 | INFO     | . Timing measurements:
[2025-06-05 00:06:00] 2025-06-04 19:37:11,222 | INFO     | . get job = 0 s
[2025-06-05 00:06:00] 2025-06-04 19:37:11,222 | INFO     | . initial setup = 9 s
[2025-06-05 00:06:00] 2025-06-04 19:37:11,222 | INFO     | . payload setup = 146 s
[2025-06-05 00:06:00] 2025-06-04 19:37:11,222 | INFO     | . stage-in = 0 s
[2025-06-05 00:06:00] 2025-06-04 19:37:11,222 | INFO     | . payload execution = 12113 s
[2025-06-05 00:06:00] 2025-06-04 19:37:11,222 | INFO     | . stage-out = 1 s
[2025-06-05 00:06:00] 2025-06-04 19:37:11,222 | INFO     | . log creation = 0 s
[2025-06-05 00:06:00] 2025-06-04 19:37:11,222 | INFO     | ..............................
[2025-06-05 00:06:00] 2025-06-04 19:37:11,747 | INFO     | 
[2025-06-05 00:06:00] 2025-06-04 19:37:11,747 | INFO     | job summary report
[2025-06-05 00:06:00] 2025-06-04 19:37:11,747 | INFO     | --------------------------------------------------
[2025-06-05 00:06:00] 2025-06-04 19:37:11,747 | INFO     | PanDA job id: 6678156082
[2025-06-05 00:06:00] 2025-06-04 19:37:11,747 | INFO     | task id: 45006595
[2025-06-05 00:06:00] 2025-06-04 19:37:11,748 | INFO     | errors: (none)
[2025-06-05 00:06:00] 2025-06-04 19:37:11,748 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 00:06:00] 2025-06-04 19:37:11,748 | INFO     | pilot state: finished 
[2025-06-05 00:06:00] 2025-06-04 19:37:11,748 | INFO     | transexitcode: 0
[2025-06-05 00:06:00] 2025-06-04 19:37:11,748 | INFO     | exeerrorcode: 0
[2025-06-05 00:06:00] 2025-06-04 19:37:11,748 | INFO     | exeerrordiag: 
[2025-06-05 00:06:00] 2025-06-04 19:37:11,748 | INFO     | exitcode: 0
[2025-06-05 00:06:00] 2025-06-04 19:37:11,748 | INFO     | exitmsg: OK
[2025-06-05 00:06:00] 2025-06-04 19:37:11,748 | INFO     | cpuconsumptiontime: 45084 s
[2025-06-05 00:06:00] 2025-06-04 19:37:11,748 | INFO     | nevents: 400
[2025-06-05 00:06:00] 2025-06-04 19:37:11,748 | INFO     | neventsw: 0
[2025-06-05 00:06:00] 2025-06-04 19:37:11,748 | INFO     | pid: 30379
[2025-06-05 00:06:00] 2025-06-04 19:37:11,748 | INFO     | pgrp: 30379
[2025-06-05 00:06:00] 2025-06-04 19:37:11,748 | INFO     | corecount: 8
[2025-06-05 00:06:00] 2025-06-04 19:37:11,749 | INFO     | event service: False
[2025-06-05 00:06:00] 2025-06-04 19:37:11,749 | INFO     | sizes: {0: 2396514, 1: 2397370, 2: 2397398, 12: 2397398, 23: 2397426, 34: 2397454, 45: 2397610, 55: 2397638, 66: 2397666, 77: 2397694, 88: 2397750, 93: 2398264, 98
[2025-06-05 00:06:00] 2025-06-04 19:37:11,749 | INFO     | --------------------------------------------------
[2025-06-05 00:06:00] 2025-06-04 19:37:11,749 | INFO     | 
[2025-06-05 00:06:00] 2025-06-04 19:37:11,749 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-06-05 00:06:00] 2025-06-04 19:37:11,780 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,780 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,780 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,781 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,781 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,781 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,781 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,781 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,781 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,781 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,781 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,781 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,781 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,781 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,782 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,782 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,782 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,782 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 00:06:00] 2025-06-04 19:37:11,782 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,782 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 00:06:00] 2025-06-04 19:37:11,782 | INFO     | job 6678156082 has completed (purged errors)
[2025-06-05 00:06:00] 2025-06-04 19:37:11,782 | INFO     | overall cleanup function is called
[2025-06-05 00:06:00] 2025-06-04 19:37:12,791 | INFO     | --- collectZombieJob: --- 10, [30379]
[2025-06-05 00:06:00] 2025-06-04 19:37:12,791 | INFO     | zombie collector waiting for pid 30379
[2025-06-05 00:06:00] 2025-06-04 19:37:12,791 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 00:06:00] 2025-06-04 19:37:12,791 | INFO     | collected zombie processes
[2025-06-05 00:06:00] 2025-06-04 19:37:12,792 | INFO     | will attempt to kill all subprocesses of pid=30379
[2025-06-05 00:06:00] 2025-06-04 19:37:12,889 | INFO     | process IDs to be killed: [30379] (in reverse order)
[2025-06-05 00:06:00] 2025-06-04 19:37:13,032 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 00:06:00] 2025-06-04 19:37:13,032 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 00:06:00] 2025-06-04 19:37:13,035 | INFO     | did not find any defunct processes belonging to 30379
[2025-06-05 00:06:00] 2025-06-04 19:37:13,038 | INFO     | did not find any defunct processes belonging to 30379
[2025-06-05 00:06:00] 2025-06-04 19:37:13,038 | INFO     | ready for new job
[2025-06-05 00:06:00] 2025-06-04 19:37:13,038 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 00:06:00] 2025-06-04 19:37:13,040 | INFO     | **************************************
[2025-06-05 00:06:00] 2025-06-04 19:37:13,040 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 00:06:00] 2025-06-04 19:37:13,041 | INFO     | **************************************
[2025-06-05 00:06:00] 2025-06-04 19:37:13,041 | INFO     | 
[2025-06-05 00:06:00] 2025-06-04 19:37:13,041 | INFO     | pilot is running in a VM
[2025-06-05 00:06:00] 2025-06-04 19:37:13,041 | INFO     | architecture information:
[2025-06-05 00:06:00] 2025-06-04 19:37:13,042 | INFO     | executing command: cat /etc/os-release
[2025-06-05 00:06:00] 2025-06-04 19:37:13,071 | INFO     | cat /etc/os-release:
[2025-06-05 00:06:00] NAME="CentOS Linux"
[2025-06-05 00:06:00] VERSION="7 (Core)"
[2025-06-05 00:06:00] ID="centos"
[2025-06-05 00:06:00] ID_LIKE="rhel fedora"
[2025-06-05 00:06:00] VERSION_ID="7"
[2025-06-05 00:06:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 00:06:00] ANSI_COLOR="0;31"
[2025-06-05 00:06:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 00:06:00] HOME_URL="https://www.centos.org/"
[2025-06-05 00:06:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 00:06:00] 
[2025-06-05 00:06:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 00:06:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 00:06:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 00:06:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 00:06:00] 
[2025-06-05 00:06:00] 2025-06-04 19:37:13,072 | INFO     | **************************************
[2025-06-05 00:06:00] 2025-06-04 19:37:13,574 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-06-05 00:06:00] 2025-06-04 19:37:13,612 | INFO     | sufficient remaining disk space (497321771008 B)
[2025-06-05 00:06:00] 2025-06-04 19:37:13,612 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 00:06:00] 2025-06-04 19:37:13,612 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 00:06:00] 2025-06-04 19:37:13,612 | INFO     | update_server=False
[2025-06-05 00:06:00] 2025-06-04 19:37:13,613 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 00:06:00] 2025-06-04 19:37:13,613 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 00:06:00] 2025-06-04 19:37:13,613 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 00:06:00] 2025-06-04 19:37:13,613 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 00:06:00] 2025-06-04 19:37:13,614 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 00:06:00] 2025-06-04 19:37:13,645 | INFO     | all data control threads have been joined
[2025-06-05 00:06:00] 2025-06-04 19:37:14,095 | INFO     | all payload control threads have been joined
[2025-06-05 00:06:00] 2025-06-04 19:37:14,278 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:06:00] 2025-06-04 19:37:14,278 | INFO     | aborting loop
[2025-06-05 00:06:00] 2025-06-04 19:37:14,511 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 00:06:00] 2025-06-04 19:37:14,619 | INFO     | [job] retrieve thread has finished
[2025-06-05 00:06:00] 2025-06-04 19:37:14,650 | INFO     | [data] control thread has finished
[2025-06-05 00:06:00] 2025-06-04 19:37:14,877 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 00:06:00] 2025-06-04 19:37:14,896 | INFO     | [payload] validate_post thread has finished
[2025-06-05 00:06:00] 2025-06-04 19:37:15,100 | INFO     | [payload] control thread has finished
[2025-06-05 00:06:00] 2025-06-04 19:37:15,163 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 00:06:00] 2025-06-04 19:37:15,166 | INFO     | [job] validate thread has finished
[2025-06-05 00:06:00] 2025-06-04 19:37:15,192 | INFO     | all job control threads have been joined
[2025-06-05 00:06:00] 2025-06-04 19:37:15,283 | INFO     | [job] job monitor thread has finished
[2025-06-05 00:06:00] 2025-06-04 19:37:15,348 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 00:06:00] 2025-06-04 19:37:15,675 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 00:06:00] 2025-06-04 19:37:16,091 | INFO     | [data] copytool_in thread has finished
[2025-06-05 00:06:00] 2025-06-04 19:37:16,105 | INFO     | [payload] failed_post thread has finished
[2025-06-05 00:06:00] 2025-06-04 19:37:16,198 | INFO     | [job] control thread has finished
[2025-06-05 00:06:00] 2025-06-04 19:37:16,203 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 00:06:00] 2025-06-04 19:37:16,355 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:06:00] 2025-06-04 19:37:16,518 | INFO     | [data] copytool_out thread has finished
[2025-06-05 00:06:00] 2025-06-04 19:37:17,360 | INFO     | [job] queue monitor thread has finished
[2025-06-05 00:06:00] 2025-06-04 19:37:20,212 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 00:06:00] 2025-06-04 19:37:21,446 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139778574554944)>', '<ExcThread(monitor, started 139778251003648)>']
[2025-06-05 00:06:00] 2025-06-04 19:37:21,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 00:06:00] 2025-06-04 19:37:21,665 | INFO     | [monitor] control thread has ended
[2025-06-05 00:06:00] 2025-06-04 19:37:26,472 | INFO     | all workflow threads have been joined
[2025-06-05 00:06:00] 2025-06-04 19:37:26,472 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 00:06:00] 2025-06-04 19:37:26,472 | INFO     | traces error code: 0
[2025-06-05 00:06:00] 2025-06-04 19:37:26,473 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 00:06:00] 2025-06-04 19:37:26,746 [wrapper] ==== pilot stdout END ====
[2025-06-05 00:06:00] 2025-06-04 19:37:26,753 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 00:06:00] 2025-06-04 19:37:26,786 [wrapper] pilotpid: 23735
[2025-06-05 00:06:00] 2025-06-04 19:37:26,789 [wrapper] Pilot exit status: 0
[2025-06-05 00:06:00] 2025-06-04 19:37:27,428 [wrapper] pandaids: 6678156082
[2025-06-05 00:06:00] 2025-06-04 19:37:28,095 [wrapper] cleanup supervisor_pilot 28550 23736
[2025-06-05 00:06:00] 2025-06-04 19:37:28,144 [wrapper] Test setup, not cleaning
[2025-06-05 00:06:00] 2025-06-04 19:37:28,197 [wrapper] apfmon messages muted
[2025-06-05 00:06:00] 2025-06-04 19:37:28,211 [wrapper] ==== wrapper stdout END ====
[2025-06-05 00:06:00] 2025-06-04 19:37:28,280 [wrapper] ==== wrapper stderr END ====
[2025-06-05 00:06:00]  *** Error codes and diagnostics ***
[2025-06-05 00:06:00]     "exeErrorCode": 0,
[2025-06-05 00:06:00]     "exeErrorDiag": "",
[2025-06-05 00:06:00]     "pilotErrorCode": 0,
[2025-06-05 00:06:00]     "pilotErrorDiag": "",
[2025-06-05 00:06:00]  *** Listing of results directory ***
[2025-06-05 00:06:01] total 388244
[2025-06-05 00:06:01] -rw-r--r--. 1 boinc boinc    495897 Jun  4 01:22 pilot3.tar.gz
[2025-06-05 00:06:01] -rw-r--r--. 1 boinc boinc      5111 Jun  4 01:34 queuedata.json
[2025-06-05 00:06:01] -rwx------. 1 boinc boinc     37140 Jun  4 01:35 runpilot2-wrapper.sh
[2025-06-05 00:06:01] -rw-r--r--. 1 boinc boinc       100 Jun  4 17:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 00:06:01] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 17:55 run_atlas
[2025-06-05 00:06:01] -rw-r--r--. 1 boinc boinc       105 Jun  4 17:55 job.xml
[2025-06-05 00:06:01] -rw-r--r--. 1 boinc boinc      6391 Jun  4 17:55 init_data.xml
[2025-06-05 00:06:01] -rw-r--r--. 2 boinc boinc 214088532 Jun  4 17:55 EVNT.45006593._001930.pool.root.1
[2025-06-05 00:06:01] -rw-r--r--. 2 boinc boinc     15093 Jun  4 17:55 start_atlas.sh
[2025-06-05 00:06:01] drwxrwx--x. 2 boinc boinc        68 Jun  4 17:55 shared
[2025-06-05 00:06:01] -rw-r--r--. 2 boinc boinc    508879 Jun  4 17:55 input.tar.gz
[2025-06-05 00:06:01] -rw-r--r--. 1 boinc boinc         0 Jun  4 17:55 boinc_lockfile
[2025-06-05 00:06:01] -rw-r--r--. 1 boinc boinc      2525 Jun  4 18:06 pandaJob.out
[2025-06-05 00:06:01] -rw-------. 1 boinc boinc    990989 Jun  4 18:09 agis_schedconf.cvmfs.json
[2025-06-05 00:06:01] drwx------. 4 boinc boinc      4096 Jun  4 18:09 pilot3
[2025-06-05 00:06:01] -rw-------. 1 boinc boinc        95 Jun  4 21:36 pilot_heartbeat.json
[2025-06-05 00:06:01] -rw-------. 1 boinc boinc 176759720 Jun  4 21:36 HITS.45006595._048069.pool.root.1
[2025-06-05 00:06:01] -rw-r--r--. 1 boinc boinc       531 Jun  4 21:36 boinc_task_state.xml
[2025-06-05 00:06:01] -rw-------. 1 boinc boinc      1018 Jun  4 21:36 memory_monitor_summary.json
[2025-06-05 00:06:01] -rw-------. 1 boinc boinc   1598969 Jun  4 21:36 agis_ddmendpoints.agis.ALL.json
[2025-06-05 00:06:01] -rw-------. 1 boinc boinc    368940 Jun  4 21:36 log.45006595._048069.job.log.tgz.1
[2025-06-05 00:06:01] -rw-------. 1 boinc boinc      7697 Jun  4 21:37 heartbeat.json
[2025-06-05 00:06:01] -rw-------. 1 boinc boinc      4539 Jun  4 21:37 pilotlog.txt
[2025-06-05 00:06:01] -rw-------. 1 boinc boinc   1074564 Jun  4 21:37 log.45006595._048069.job.log.1
[2025-06-05 00:06:01] -rw-------. 1 boinc boinc       357 Jun  4 21:37 output.list
[2025-06-05 00:06:01] -rw-r--r--. 1 boinc boinc       620 Jun  4 21:37 runtime_log
[2025-06-05 00:06:01] -rw-------. 1 boinc boinc   1464320 Jun  4 21:37 result.tar.gz
[2025-06-05 00:06:01] -rw-------. 1 boinc boinc       657 Jun  4 21:37 TcFODmULqg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmYGaKDmfpu6nm.diag
[2025-06-05 00:06:01] -rw-r--r--. 1 boinc boinc      8659 Jun  4 21:37 runtime_log.err
[2025-06-05 00:06:01] -rw-r--r--. 1 boinc boinc      8192 Jun  5 00:06 boinc_mmap_file
[2025-06-05 00:06:01] -rw-r--r--. 1 boinc boinc        28 Jun  5 00:06 wrapper_checkpoint.txt
[2025-06-05 00:06:01] -rw-r--r--. 1 boinc boinc     20801 Jun  5 00:06 stderr.txt
[2025-06-05 00:06:01] HITS file was successfully produced:
[2025-06-05 00:06:01] -rw-------. 1 boinc boinc 176759720 Jun  4 21:36 shared/HITS.pool.root.1
[2025-06-05 00:06:01]  *** Contents of shared directory: ***
[2025-06-05 00:06:01] total 383640
[2025-06-05 00:06:01] -rw-r--r--. 2 boinc boinc 214088532 Jun  4 17:55 ATLAS.root_0
[2025-06-05 00:06:01] -rw-r--r--. 2 boinc boinc     15093 Jun  4 17:55 start_atlas.sh
[2025-06-05 00:06:01] -rw-r--r--. 2 boinc boinc    508879 Jun  4 17:55 input.tar.gz
[2025-06-05 00:06:01] -rw-------. 1 boinc boinc 176759720 Jun  4 21:36 HITS.pool.root.1
[2025-06-05 00:06:01] -rw-------. 1 boinc boinc   1464320 Jun  4 21:37 result.tar.gz
00:06:02 (10376): run_atlas exited; CPU time 45235.101550
00:06:02 (10376): called boinc_finish(0)

</stderr_txt>
]]>

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