Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:19:49 (1178323): wrapper (7.7.26015): starting
19:19:49 (1178323): wrapper: running run_atlas (--nthreads 6)
[2025-06-04 19:19:49] Arguments: --nthreads 6
[2025-06-04 19:19:49] Threads: 6
[2025-06-04 19:19:49] Checking for CVMFS
[2025-06-04 19:19:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:19:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:19:49] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:19:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:19:50] 2.12.7.0 917718 559 70552 146775 1 56 16851943 20971521 929 130560 0 711002 99.993 223417 148 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-06-04 19:19:50] CVMFS is ok
[2025-06-04 19:19:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:19:50] Checking for apptainer binary...
[2025-06-04 19:19:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:19:50] Running /usr/bin/apptainer --version
[2025-06-04 19:19:50] apptainer version 1.4.0-1.el9
[2025-06-04 19:19:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:19:50] testio005
[2025-06-04 19:19:50] apptainer works
[2025-06-04 19:19:50] Set ATHENA_PROC_NUMBER=6
[2025-06-04 19:19:50] Set ATHENA_CORE_NUMBER=6
[2025-06-04 19:19:50] Starting ATLAS job with PandaID=6678246871
[2025-06-04 19:19:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 21:08:10]  *** The last 200 lines of the pilot log: ***
[2025-06-04 21:08:10] 2025-06-04 12:07:49,797 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6678246871/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 21:08:10] 2025-06-04 12:07:49,797 | INFO     | extracted standard info from prmon json
[2025-06-04 21:08:10] 2025-06-04 12:07:49,797 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 21:08:10] 2025-06-04 12:07:49,798 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 21:08:10] 2025-06-04 12:07:49,798 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 21:08:10] 2025-06-04 12:07:49,798 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 21:08:10] 2025-06-04 12:07:49,800 | INFO     | fitting pss+swap vs Time
[2025-06-04 21:08:10] 2025-06-04 12:07:49,801 | INFO     | sum of square deviations: 358927175.9619045
[2025-06-04 21:08:10] 2025-06-04 12:07:49,801 | INFO     | sum of deviations: 35168970557.29519
[2025-06-04 21:08:10] 2025-06-04 12:07:49,801 | INFO     | mean x: 1749035603.0190477
[2025-06-04 21:08:10] 2025-06-04 12:07:49,801 | INFO     | mean y: 2303252.3523809523
[2025-06-04 21:08:10] 2025-06-04 12:07:49,802 | INFO     | -- intersect: -171374471051.20886
[2025-06-04 21:08:10] 2025-06-04 12:07:49,802 | INFO     | intersect: -171374471051.20886
[2025-06-04 21:08:10] 2025-06-04 12:07:49,802 | INFO     | chi2: 4.489584387857353
[2025-06-04 21:08:10] 2025-06-04 12:07:49,802 | INFO     | sum of square deviations: 310052450.9600007
[2025-06-04 21:08:10] 2025-06-04 12:07:49,803 | INFO     | sum of deviations: 39589964262.83998
[2025-06-04 21:08:10] 2025-06-04 12:07:49,803 | INFO     | mean x: 1749035450.52
[2025-06-04 21:08:10] 2025-06-04 12:07:49,803 | INFO     | mean y: 2316286.58
[2025-06-04 21:08:10] 2025-06-04 12:07:49,803 | INFO     | -- intersect: -223328448447.3524
[2025-06-04 21:08:10] 2025-06-04 12:07:49,803 | INFO     | intersect: -223328448447.3524
[2025-06-04 21:08:10] 2025-06-04 12:07:49,803 | INFO     | chi2: 3.7907889527688425
[2025-06-04 21:08:10] 2025-06-04 12:07:49,803 | INFO     | current chi2=3.7907889527688425 (change=15.564813459760126 %)
[2025-06-04 21:08:10] 2025-06-04 12:07:49,803 | INFO     | right removable region: 99
[2025-06-04 21:08:10] 2025-06-04 12:07:49,804 | INFO     | sum of square deviations: 310051230.9600007
[2025-06-04 21:08:10] 2025-06-04 12:07:49,804 | INFO     | sum of deviations: 12953912191.040005
[2025-06-04 21:08:10] 2025-06-04 12:07:49,804 | INFO     | mean x: 1749035755.52
[2025-06-04 21:08:10] 2025-06-04 12:07:49,805 | INFO     | mean y: 2372233.98
[2025-06-04 21:08:10] 2025-06-04 12:07:49,805 | INFO     | -- intersect: -73072182335.09483
[2025-06-04 21:08:10] 2025-06-04 12:07:49,805 | INFO     | intersect: -73072182335.09483
[2025-06-04 21:08:10] 2025-06-04 12:07:49,805 | INFO     | chi2: 2.326222589265237
[2025-06-04 21:08:10] 2025-06-04 12:07:49,805 | INFO     | current chi2=2.326222589265237 (change=48.18623756005569 %)
[2025-06-04 21:08:10] 2025-06-04 12:07:49,805 | INFO     | sum of square deviations: 265826535.9578947
[2025-06-04 21:08:10] 2025-06-04 12:07:49,806 | INFO     | sum of deviations: -6263148272.978948
[2025-06-04 21:08:10] 2025-06-04 12:07:49,806 | INFO     | mean x: 1749035908.0210526
[2025-06-04 21:08:10] 2025-06-04 12:07:49,806 | INFO     | mean y: 2438604.989473684
[2025-06-04 21:08:10] 2025-06-04 12:07:49,806 | INFO     | -- intersect: 41211534556.32573
[2025-06-04 21:08:10] 2025-06-04 12:07:49,806 | INFO     | intersect: 41211534556.32573
[2025-06-04 21:08:10] 2025-06-04 12:07:49,806 | INFO     | chi2: 0.8204177791059676
[2025-06-04 21:08:10] 2025-06-04 12:07:49,807 | INFO     | current chi2=0.8204177791059676 (change=64.73175942440204 %)
[2025-06-04 21:08:10] 2025-06-04 12:07:49,807 | INFO     | sum of square deviations: 226020528.45555517
[2025-06-04 21:08:10] 2025-06-04 12:07:49,807 | INFO     | sum of deviations: -8994903162.777779
[2025-06-04 21:08:10] 2025-06-04 12:07:49,807 | INFO     | mean x: 1749036060.5222223
[2025-06-04 21:08:10] 2025-06-04 12:07:49,807 | INFO     | mean y: 2448640.888888889
[2025-06-04 21:08:10] 2025-06-04 12:07:49,807 | INFO     | -- intersect: 69608559643.75452
[2025-06-04 21:08:10] 2025-06-04 12:07:49,808 | INFO     | intersect: 69608559643.75452
[2025-06-04 21:08:10] 2025-06-04 12:07:49,808 | INFO     | chi2: 0.7078233944070504
[2025-06-04 21:08:10] 2025-06-04 12:07:49,808 | INFO     | current chi2=0.7078233944070504 (change=13.724030313142949 %)
[2025-06-04 21:08:10] 2025-06-04 12:07:49,808 | INFO     | left removable region: 30
[2025-06-04 21:08:10] 2025-06-04 12:07:49,808 | INFO     | sum of square deviations: 101840357.94202887
[2025-06-04 21:08:10] 2025-06-04 12:07:49,809 | INFO     | sum of deviations: -2226643906.1449275
[2025-06-04 21:08:10] 2025-06-04 12:07:49,809 | INFO     | mean x: 1749036335.0289855
[2025-06-04 21:08:10] 2025-06-04 12:07:49,809 | INFO     | mean y: 2467771.072463768
[2025-06-04 21:08:10] 2025-06-04 12:07:49,809 | INFO     | -- intersect: 38243506743.4141
[2025-06-04 21:08:10] 2025-06-04 12:07:49,809 | INFO     | intersect: 38243506743.4141
[2025-06-04 21:08:10] 2025-06-04 12:07:49,809 | INFO     | chi2: 0.006602246183626232
[2025-06-04 21:08:10] 2025-06-04 12:07:49,809 | INFO     | -- intersect: 38243506743.4141
[2025-06-04 21:08:10] 2025-06-04 12:07:49,810 | INFO     | current memory leak: -21.86 B/s (using 69 data points, chi2=0.01)
[2025-06-04 21:08:10] 2025-06-04 12:07:49,810 | INFO     | ..............................
[2025-06-04 21:08:10] 2025-06-04 12:07:49,810 | INFO     | . Timing measurements:
[2025-06-04 21:08:10] 2025-06-04 12:07:49,811 | INFO     | . get job = 0 s
[2025-06-04 21:08:10] 2025-06-04 12:07:49,811 | INFO     | . initial setup = 7 s
[2025-06-04 21:08:10] 2025-06-04 12:07:49,811 | INFO     | . payload setup = 6 s
[2025-06-04 21:08:10] 2025-06-04 12:07:49,811 | INFO     | . stage-in = 0 s
[2025-06-04 21:08:10] 2025-06-04 12:07:49,811 | INFO     | . payload execution = 6358 s
[2025-06-04 21:08:10] 2025-06-04 12:07:49,811 | INFO     | . stage-out = 0 s
[2025-06-04 21:08:10] 2025-06-04 12:07:49,811 | INFO     | . log creation = 0 s
[2025-06-04 21:08:10] 2025-06-04 12:07:49,811 | INFO     | ..............................
[2025-06-04 21:08:10] 2025-06-04 12:07:49,911 | INFO     | 
[2025-06-04 21:08:10] 2025-06-04 12:07:49,911 | INFO     | job summary report
[2025-06-04 21:08:10] 2025-06-04 12:07:49,911 | INFO     | --------------------------------------------------
[2025-06-04 21:08:10] 2025-06-04 12:07:49,911 | INFO     | PanDA job id: 6678246871
[2025-06-04 21:08:10] 2025-06-04 12:07:49,911 | INFO     | task id: 45006595
[2025-06-04 21:08:10] 2025-06-04 12:07:49,911 | INFO     | errors: (none)
[2025-06-04 21:08:10] 2025-06-04 12:07:49,911 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 21:08:10] 2025-06-04 12:07:49,911 | INFO     | pilot state: finished 
[2025-06-04 21:08:10] 2025-06-04 12:07:49,911 | INFO     | transexitcode: 0
[2025-06-04 21:08:10] 2025-06-04 12:07:49,911 | INFO     | exeerrorcode: 0
[2025-06-04 21:08:10] 2025-06-04 12:07:49,911 | INFO     | exeerrordiag: 
[2025-06-04 21:08:10] 2025-06-04 12:07:49,912 | INFO     | exitcode: 0
[2025-06-04 21:08:10] 2025-06-04 12:07:49,912 | INFO     | exitmsg: OK
[2025-06-04 21:08:10] 2025-06-04 12:07:49,912 | INFO     | cpuconsumptiontime: 33206 s
[2025-06-04 21:08:10] 2025-06-04 12:07:49,912 | INFO     | nevents: 400
[2025-06-04 21:08:10] 2025-06-04 12:07:49,912 | INFO     | neventsw: 0
[2025-06-04 21:08:10] 2025-06-04 12:07:49,912 | INFO     | pid: 1188554
[2025-06-04 21:08:10] 2025-06-04 12:07:49,912 | INFO     | pgrp: 1188554
[2025-06-04 21:08:10] 2025-06-04 12:07:49,912 | INFO     | corecount: 6
[2025-06-04 21:08:10] 2025-06-04 12:07:49,912 | INFO     | event service: False
[2025-06-04 21:08:10] 2025-06-04 12:07:49,912 | INFO     | sizes: {0: 2404354, 1: 2405210, 5: 2405416, 12: 2405472, 6369: 2432345, 6371: 2441286, 6372: 2441470, 6450: 2441640}
[2025-06-04 21:08:10] 2025-06-04 12:07:49,912 | INFO     | --------------------------------------------------
[2025-06-04 21:08:10] 2025-06-04 12:07:49,912 | INFO     | 
[2025-06-04 21:08:10] 2025-06-04 12:07:49,913 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-06-04 21:08:10] 2025-06-04 12:07:49,934 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,935 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,935 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,935 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,935 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,935 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,935 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,935 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,935 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,935 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,936 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,936 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,936 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,936 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,936 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,936 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,936 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,936 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 21:08:10] 2025-06-04 12:07:49,936 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,936 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 21:08:10] 2025-06-04 12:07:49,937 | INFO     | job 6678246871 has completed (purged errors)
[2025-06-04 21:08:10] 2025-06-04 12:07:49,937 | INFO     | overall cleanup function is called
[2025-06-04 21:08:10] 2025-06-04 12:07:50,944 | INFO     | --- collectZombieJob: --- 10, [1188554]
[2025-06-04 21:08:10] 2025-06-04 12:07:50,945 | INFO     | zombie collector waiting for pid 1188554
[2025-06-04 21:08:10] 2025-06-04 12:07:50,945 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 21:08:10] 2025-06-04 12:07:50,945 | INFO     | collected zombie processes
[2025-06-04 21:08:10] 2025-06-04 12:07:50,945 | INFO     | will attempt to kill all subprocesses of pid=1188554
[2025-06-04 21:08:10] 2025-06-04 12:07:51,079 | INFO     | process IDs to be killed: [1188554] (in reverse order)
[2025-06-04 21:08:10] 2025-06-04 12:07:51,136 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 21:08:10] 2025-06-04 12:07:51,137 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 21:08:10] 2025-06-04 12:07:51,141 | INFO     | did not find any defunct processes belonging to 1188554
[2025-06-04 21:08:10] 2025-06-04 12:07:51,146 | INFO     | did not find any defunct processes belonging to 1188554
[2025-06-04 21:08:10] 2025-06-04 12:07:51,147 | INFO     | ready for new job
[2025-06-04 21:08:10] 2025-06-04 12:07:51,147 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 21:08:10] 2025-06-04 12:07:51,148 | INFO     | **************************************
[2025-06-04 21:08:10] 2025-06-04 12:07:51,149 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 21:08:10] 2025-06-04 12:07:51,149 | INFO     | **************************************
[2025-06-04 21:08:10] 2025-06-04 12:07:51,149 | INFO     | 
[2025-06-04 21:08:10] 2025-06-04 12:07:51,151 | INFO     | architecture information:
[2025-06-04 21:08:10] 2025-06-04 12:07:51,151 | INFO     | executing command: cat /etc/os-release
[2025-06-04 21:08:10] 2025-06-04 12:07:51,167 | INFO     | cat /etc/os-release:
[2025-06-04 21:08:10] NAME="CentOS Linux"
[2025-06-04 21:08:10] VERSION="7 (Core)"
[2025-06-04 21:08:10] ID="centos"
[2025-06-04 21:08:10] ID_LIKE="rhel fedora"
[2025-06-04 21:08:10] VERSION_ID="7"
[2025-06-04 21:08:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 21:08:10] ANSI_COLOR="0;31"
[2025-06-04 21:08:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 21:08:10] HOME_URL="https://www.centos.org/"
[2025-06-04 21:08:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 21:08:10] 
[2025-06-04 21:08:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 21:08:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 21:08:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 21:08:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 21:08:10] 
[2025-06-04 21:08:10] 2025-06-04 12:07:51,168 | INFO     | **************************************
[2025-06-04 21:08:10] 2025-06-04 12:07:51,671 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-06-04 21:08:10] 2025-06-04 12:07:51,689 | INFO     | sufficient remaining disk space (107794661376 B)
[2025-06-04 21:08:10] 2025-06-04 12:07:51,689 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 21:08:10] 2025-06-04 12:07:51,689 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 21:08:10] 2025-06-04 12:07:51,689 | INFO     | update_server=False
[2025-06-04 21:08:10] 2025-06-04 12:07:51,689 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 21:08:10] 2025-06-04 12:07:51,690 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:08:10] 2025-06-04 12:07:51,774 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 21:08:10] 2025-06-04 12:07:51,774 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 21:08:10] 2025-06-04 12:07:51,774 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 21:08:10] 2025-06-04 12:07:51,873 | INFO     | all payload control threads have been joined
[2025-06-04 21:08:10] 2025-06-04 12:07:52,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 21:08:10] 2025-06-04 12:07:52,419 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:08:10] 2025-06-04 12:07:52,419 | INFO     | aborting loop
[2025-06-04 21:08:10] 2025-06-04 12:07:52,690 | INFO     | [job] retrieve thread has finished
[2025-06-04 21:08:10] 2025-06-04 12:07:52,694 | INFO     | [job] queue monitor thread has finished
[2025-06-04 21:08:10] 2025-06-04 12:07:52,741 | INFO     | all data control threads have been joined
[2025-06-04 21:08:10] 2025-06-04 12:07:52,879 | INFO     | [payload] control thread has finished
[2025-06-04 21:08:10] 2025-06-04 12:07:52,901 | INFO     | [data] copytool_in thread has finished
[2025-06-04 21:08:10] 2025-06-04 12:07:52,903 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 21:08:10] 2025-06-04 12:07:52,913 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 21:08:10] 2025-06-04 12:07:53,206 | INFO     | all job control threads have been joined
[2025-06-04 21:08:10] 2025-06-04 12:07:53,424 | INFO     | [job] job monitor thread has finished
[2025-06-04 21:08:10] 2025-06-04 12:07:53,427 | INFO     | [payload] failed_post thread has finished
[2025-06-04 21:08:10] 2025-06-04 12:07:53,645 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 21:08:10] 2025-06-04 12:07:53,746 | INFO     | [data] control thread has finished
[2025-06-04 21:08:10] 2025-06-04 12:07:53,784 | INFO     | [payload] validate_post thread has finished
[2025-06-04 21:08:10] 2025-06-04 12:07:53,814 | INFO     | [job] validate thread has finished
[2025-06-04 21:08:10] 2025-06-04 12:07:54,017 | INFO     | [data] copytool_out thread has finished
[2025-06-04 21:08:10] 2025-06-04 12:07:54,211 | INFO     | [job] control thread has finished
[2025-06-04 21:08:10] 2025-06-04 12:07:54,603 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 21:08:10] 2025-06-04 12:07:58,609 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 21:08:10] 2025-06-04 12:08:02,548 | INFO     | job.realtimelogging is not enabled
[2025-06-04 21:08:10] 2025-06-04 12:08:03,553 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 21:08:10] 2025-06-04 12:08:04,772 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139689328195392)>', '<ExcThread(monitor, started 139688836851456)>']
[2025-06-04 21:08:10] 2025-06-04 12:08:04,839 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 21:08:10] 2025-06-04 12:08:04,839 | INFO     | [monitor] control thread has ended
[2025-06-04 21:08:10] 2025-06-04 12:08:09,797 | INFO     | all workflow threads have been joined
[2025-06-04 21:08:10] 2025-06-04 12:08:09,797 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 21:08:10] 2025-06-04 12:08:09,798 | INFO     | traces error code: 0
[2025-06-04 21:08:10] 2025-06-04 12:08:09,798 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 21:08:10] 2025-06-04 12:08:09,994 [wrapper] ==== pilot stdout END ====
[2025-06-04 21:08:10] 2025-06-04 12:08:09,997 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 21:08:10] 2025-06-04 12:08:09,999 [wrapper] pilotpid: 1182008
[2025-06-04 21:08:10] 2025-06-04 12:08:10,002 [wrapper] Pilot exit status: 0
[2025-06-04 21:08:10] 2025-06-04 12:08:10,012 [wrapper] pandaids: 6678246871
[2025-06-04 21:08:10] 2025-06-04 12:08:10,050 [wrapper] cleanup supervisor_pilot 1228115 1182009
[2025-06-04 21:08:10] 2025-06-04 12:08:10,053 [wrapper] Test setup, not cleaning
[2025-06-04 21:08:10] 2025-06-04 12:08:10,056 [wrapper] apfmon messages muted
[2025-06-04 21:08:10] 2025-06-04 12:08:10,059 [wrapper] ==== wrapper stdout END ====
[2025-06-04 21:08:10] 2025-06-04 12:08:10,062 [wrapper] ==== wrapper stderr END ====
[2025-06-04 21:08:10]  *** Error codes and diagnostics ***
[2025-06-04 21:08:10]     "exeErrorCode": 0,
[2025-06-04 21:08:10]     "exeErrorDiag": "",
[2025-06-04 21:08:10]     "pilotErrorCode": 0,
[2025-06-04 21:08:10]     "pilotErrorDiag": "",
[2025-06-04 21:08:10]  *** Listing of results directory ***
[2025-06-04 21:08:10] total 393028
[2025-06-04 21:08:10] -rw-r--r--. 1 boinc boinc    495897 Jun  4 10:59 pilot3.tar.gz
[2025-06-04 21:08:10] -rwx------. 1 boinc boinc     37140 Jun  4 11:07 runpilot2-wrapper.sh
[2025-06-04 21:08:10] -rw-r--r--. 1 boinc boinc      5111 Jun  4 11:07 queuedata.json
[2025-06-04 21:08:10] -rw-r--r--. 1 boinc boinc       100 Jun  4 19:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 21:08:10] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 19:19 run_atlas
[2025-06-04 21:08:10] -rw-r--r--. 1 boinc boinc       105 Jun  4 19:19 job.xml
[2025-06-04 21:08:10] -rw-r--r--. 2 boinc boinc 215750336 Jun  4 19:19 EVNT.45006593._002013.pool.root.1
[2025-06-04 21:08:10] -rw-r--r--. 1 boinc boinc      9362 Jun  4 19:19 init_data.xml
[2025-06-04 21:08:10] -rw-r--r--. 2 boinc boinc     15093 Jun  4 19:19 start_atlas.sh
[2025-06-04 21:08:10] drwxrwx--x. 2 boinc boinc        68 Jun  4 19:19 shared
[2025-06-04 21:08:10] -rw-r--r--. 2 boinc boinc    508879 Jun  4 19:19 input.tar.gz
[2025-06-04 21:08:10] -rw-r--r--. 1 boinc boinc         0 Jun  4 19:19 boinc_lockfile
[2025-06-04 21:08:10] -rw-r--r--. 1 boinc boinc      2524 Jun  4 19:19 pandaJob.out
[2025-06-04 21:08:10] -rw-------. 1 boinc boinc    986766 Jun  4 19:19 agis_schedconf.cvmfs.json
[2025-06-04 21:08:10] -rw-------. 1 boinc boinc   1603667 Jun  4 19:20 agis_ddmendpoints.agis.ALL.json
[2025-06-04 21:08:10] drwx------. 4 boinc boinc      4096 Jun  4 19:20 pilot3
[2025-06-04 21:08:10] -rw-------. 1 boinc boinc 181095302 Jun  4 21:06 HITS.45006595._050199.pool.root.1
[2025-06-04 21:08:10] -rw-r--r--. 1 boinc boinc       530 Jun  4 21:06 boinc_task_state.xml
[2025-06-04 21:08:10] -rw-------. 1 boinc boinc      1019 Jun  4 21:06 memory_monitor_summary.json
[2025-06-04 21:08:10] -rw-------. 1 boinc boinc    278334 Jun  4 21:06 log.45006595._050199.job.log.tgz.1
[2025-06-04 21:08:10] -rw-------. 1 boinc boinc        95 Jun  4 21:07 pilot_heartbeat.json
[2025-06-04 21:08:10] -rw-------. 1 boinc boinc      7666 Jun  4 21:07 heartbeat.json
[2025-06-04 21:08:10] -rw-r--r--. 1 boinc boinc      8192 Jun  4 21:07 boinc_mmap_file
[2025-06-04 21:08:10] -rw-r--r--. 1 boinc boinc        27 Jun  4 21:07 wrapper_checkpoint.txt
[2025-06-04 21:08:10] -rw-------. 1 boinc boinc      4426 Jun  4 21:08 pilotlog.txt
[2025-06-04 21:08:10] -rw-------. 1 boinc boinc    614636 Jun  4 21:08 log.45006595._050199.job.log.1
[2025-06-04 21:08:10] -rw-------. 1 boinc boinc       357 Jun  4 21:08 output.list
[2025-06-04 21:08:10] -rw-r--r--. 1 boinc boinc       620 Jun  4 21:08 runtime_log
[2025-06-04 21:08:10] -rw-------. 1 boinc boinc    911360 Jun  4 21:08 result.tar.gz
[2025-06-04 21:08:10] -rw-r--r--. 1 boinc boinc      8617 Jun  4 21:08 runtime_log.err
[2025-06-04 21:08:10] -rw-------. 1 boinc boinc       643 Jun  4 21:08 AhBODmVisg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmXVaKDm6w5h3n.diag
[2025-06-04 21:08:10] -rw-r--r--. 1 boinc boinc     20539 Jun  4 21:08 stderr.txt
[2025-06-04 21:08:10] HITS file was successfully produced:
[2025-06-04 21:08:10] -rw-------. 1 boinc boinc 181095302 Jun  4 21:06 shared/HITS.pool.root.1
[2025-06-04 21:08:10]  *** Contents of shared directory: ***
[2025-06-04 21:08:10] total 388956
[2025-06-04 21:08:10] -rw-r--r--. 2 boinc boinc 215750336 Jun  4 19:19 ATLAS.root_0
[2025-06-04 21:08:10] -rw-r--r--. 2 boinc boinc     15093 Jun  4 19:19 start_atlas.sh
[2025-06-04 21:08:10] -rw-r--r--. 2 boinc boinc    508879 Jun  4 19:19 input.tar.gz
[2025-06-04 21:08:10] -rw-------. 1 boinc boinc 181095302 Jun  4 21:06 HITS.pool.root.1
[2025-06-04 21:08:10] -rw-------. 1 boinc boinc    911360 Jun  4 21:08 result.tar.gz
21:08:11 (1178323): run_atlas exited; CPU time 33272.954456
21:08:11 (1178323): called boinc_finish(0)

</stderr_txt>
]]>

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