Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:58:09 (11890): wrapper (7.7.26015): starting
16:58:09 (11890): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 16:58:09] Arguments: --nthreads 8
[2025-06-04 16:58:09] Threads: 8
[2025-06-04 16:58:09] Checking for CVMFS
[2025-06-04 16:58:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 16:58:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 16:58:10] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 16:58:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 16:58:12] 2.11.2.0 9832 33346 88752 146783 1 103 14194043 25165824 3132 130560 0 18154531 99.830 18445647 2090 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 16:58:12] CVMFS is ok
[2025-06-04 16:58:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 16:58:12] Checking for apptainer binary...
[2025-06-04 16:58:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 16:58:12] Running /usr/bin/apptainer --version
[2025-06-04 16:58:12] apptainer version 1.3.2-1.el7
[2025-06-04 16:58:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 16:59:45] cg-vwn287.simple-grid.lan
[2025-06-04 16:59:45] apptainer works
[2025-06-04 16:59:45] Set ATHENA_PROC_NUMBER=8
[2025-06-04 16:59:45] Set ATHENA_CORE_NUMBER=8
[2025-06-04 16:59:45] Starting ATLAS job with PandaID=6678247016
[2025-06-04 16:59:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 00:08:39]  *** The last 200 lines of the pilot log: ***
[2025-06-05 00:08:39] 2025-06-04 19:02:28,806 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 00:08:39] 2025-06-04 19:02:28,806 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 00:08:39] 2025-06-04 19:02:28,806 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 00:08:39] 2025-06-04 19:02:28,806 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 00:08:39] 2025-06-04 19:02:28,811 | INFO     | fitting pss+swap vs Time
[2025-06-05 00:08:39] 2025-06-04 19:02:28,812 | INFO     | sum of square deviations: 3627000098.0
[2025-06-05 00:08:39] 2025-06-04 19:02:28,814 | INFO     | sum of deviations: 75402883667.0
[2025-06-05 00:08:39] 2025-06-04 19:02:28,814 | INFO     | mean x: 1749056741.0
[2025-06-05 00:08:39] 2025-06-04 19:02:28,814 | INFO     | mean y: 2426244.2378854626
[2025-06-05 00:08:39] 2025-06-04 19:02:28,814 | INFO     | -- intersect: -36359282717.757614
[2025-06-05 00:08:39] 2025-06-04 19:02:28,814 | INFO     | intersect: -36359282717.757614
[2025-06-05 00:08:39] 2025-06-04 19:02:28,815 | INFO     | chi2: 4.866517211580538
[2025-06-05 00:08:39] 2025-06-04 19:02:28,815 | INFO     | sum of square deviations: 3392567795.5
[2025-06-05 00:08:39] 2025-06-04 19:02:28,817 | INFO     | sum of deviations: 88348299854.49998
[2025-06-05 00:08:39] 2025-06-04 19:02:28,817 | INFO     | mean x: 1749056588.5
[2025-06-05 00:08:39] 2025-06-04 19:02:28,817 | INFO     | mean y: 2434491.2657657657
[2025-06-05 00:08:39] 2025-06-04 19:02:28,817 | INFO     | -- intersect: -45546007060.36801
[2025-06-05 00:08:39] 2025-06-04 19:02:28,817 | INFO     | intersect: -45546007060.36801
[2025-06-05 00:08:39] 2025-06-04 19:02:28,818 | INFO     | chi2: 4.125263998670815
[2025-06-05 00:08:39] 2025-06-04 19:02:28,818 | INFO     | current chi2=4.125263998670815 (change=15.23169816693159 %)
[2025-06-05 00:08:39] 2025-06-04 19:02:28,818 | INFO     | right removable region: 221
[2025-06-05 00:08:39] 2025-06-04 19:02:28,818 | INFO     | sum of square deviations: 3392567795.5
[2025-06-05 00:08:39] 2025-06-04 19:02:28,820 | INFO     | sum of deviations: 5493258284.499998
[2025-06-05 00:08:39] 2025-06-04 19:02:28,820 | INFO     | mean x: 1749056893.5
[2025-06-05 00:08:39] 2025-06-04 19:02:28,820 | INFO     | mean y: 2471629.472972973
[2025-06-05 00:08:39] 2025-06-04 19:02:28,820 | INFO     | -- intersect: -2829607742.0948005
[2025-06-05 00:08:39] 2025-06-04 19:02:28,820 | INFO     | intersect: -2829607742.0948005
[2025-06-05 00:08:39] 2025-06-04 19:02:28,821 | INFO     | chi2: 1.0996918785071677
[2025-06-05 00:08:39] 2025-06-04 19:02:28,821 | INFO     | current chi2=1.0996918785071677 (change=77.40289758165652 %)
[2025-06-05 00:08:39] 2025-06-04 19:02:28,821 | INFO     | sum of square deviations: 3168461268.0
[2025-06-05 00:08:39] 2025-06-04 19:02:28,827 | INFO     | sum of deviations: -9467149858.0
[2025-06-05 00:08:39] 2025-06-04 19:02:28,828 | INFO     | mean x: 1749057046.0
[2025-06-05 00:08:39] 2025-06-04 19:02:28,828 | INFO     | mean y: 2481703.410138249
[2025-06-05 00:08:39] 2025-06-04 19:02:28,828 | INFO     | -- intersect: 5228546901.652226
[2025-06-05 00:08:39] 2025-06-04 19:02:28,828 | INFO     | intersect: 5228546901.652226
[2025-06-05 00:08:39] 2025-06-04 19:02:28,828 | INFO     | chi2: 0.8145787451769457
[2025-06-05 00:08:39] 2025-06-04 19:02:28,829 | INFO     | current chi2=0.8145787451769457 (change=25.926638079501245 %)
[2025-06-05 00:08:39] 2025-06-04 19:02:28,829 | INFO     | sum of square deviations: 2954447953.0
[2025-06-05 00:08:39] 2025-06-04 19:02:28,831 | INFO     | sum of deviations: -6305223916.500001
[2025-06-05 00:08:39] 2025-06-04 19:02:28,831 | INFO     | mean x: 1749057198.5
[2025-06-05 00:08:39] 2025-06-04 19:02:28,831 | INFO     | mean y: 2479481.6273584906
[2025-06-05 00:08:39] 2025-06-04 19:02:28,831 | INFO     | -- intersect: 3735223281.7374463
[2025-06-05 00:08:39] 2025-06-04 19:02:28,831 | INFO     | intersect: 3735223281.7374463
[2025-06-05 00:08:39] 2025-06-04 19:02:28,832 | INFO     | chi2: 0.7935035132069126
[2025-06-05 00:08:39] 2025-06-04 19:02:28,832 | INFO     | current chi2=0.7935035132069126 (change=2.5872553261201405 %)
[2025-06-05 00:08:39] 2025-06-04 19:02:28,832 | INFO     | left removable region: 30
[2025-06-05 00:08:39] 2025-06-04 19:02:28,832 | INFO     | sum of square deviations: 2160561440.0
[2025-06-05 00:08:39] 2025-06-04 19:02:28,834 | INFO     | sum of deviations: 4056686172.0
[2025-06-05 00:08:39] 2025-06-04 19:02:28,834 | INFO     | mean x: 1749057473.0
[2025-06-05 00:08:39] 2025-06-04 19:02:28,834 | INFO     | mean y: 2492345.523560209
[2025-06-05 00:08:39] 2025-06-04 19:02:28,834 | INFO     | -- intersect: -3281550928.317504
[2025-06-05 00:08:39] 2025-06-04 19:02:28,834 | INFO     | intersect: -3281550928.317504
[2025-06-05 00:08:39] 2025-06-04 19:02:28,834 | INFO     | chi2: 0.00026249335043081055
[2025-06-05 00:08:39] 2025-06-04 19:02:28,835 | INFO     | -- intersect: -3281550928.317504
[2025-06-05 00:08:39] 2025-06-04 19:02:28,835 | INFO     | current memory leak: 1.88 B/s (using 191 data points, chi2=0.00)
[2025-06-05 00:08:39] 2025-06-04 19:02:28,836 | INFO     | ..............................
[2025-06-05 00:08:39] 2025-06-04 19:02:28,836 | INFO     | . Timing measurements:
[2025-06-05 00:08:39] 2025-06-04 19:02:28,836 | INFO     | . get job = 0 s
[2025-06-05 00:08:39] 2025-06-04 19:02:28,839 | INFO     | . initial setup = 5 s
[2025-06-05 00:08:39] 2025-06-04 19:02:28,839 | INFO     | . payload setup = 147 s
[2025-06-05 00:08:39] 2025-06-04 19:02:28,839 | INFO     | . stage-in = 0 s
[2025-06-05 00:08:39] 2025-06-04 19:02:28,839 | INFO     | . payload execution = 13946 s
[2025-06-05 00:08:39] 2025-06-04 19:02:28,839 | INFO     | . stage-out = 2 s
[2025-06-05 00:08:39] 2025-06-04 19:02:28,840 | INFO     | . log creation = 0 s
[2025-06-05 00:08:39] 2025-06-04 19:02:28,840 | INFO     | ..............................
[2025-06-05 00:08:39] 2025-06-04 19:02:28,986 | INFO     | 
[2025-06-05 00:08:39] 2025-06-04 19:02:28,986 | INFO     | job summary report
[2025-06-05 00:08:39] 2025-06-04 19:02:28,986 | INFO     | --------------------------------------------------
[2025-06-05 00:08:39] 2025-06-04 19:02:28,986 | INFO     | PanDA job id: 6678247016
[2025-06-05 00:08:39] 2025-06-04 19:02:28,986 | INFO     | task id: 45006595
[2025-06-05 00:08:39] 2025-06-04 19:02:28,987 | INFO     | errors: (none)
[2025-06-05 00:08:39] 2025-06-04 19:02:28,987 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 00:08:39] 2025-06-04 19:02:28,987 | INFO     | pilot state: finished 
[2025-06-05 00:08:39] 2025-06-04 19:02:28,987 | INFO     | transexitcode: 0
[2025-06-05 00:08:39] 2025-06-04 19:02:28,987 | INFO     | exeerrorcode: 0
[2025-06-05 00:08:39] 2025-06-04 19:02:28,987 | INFO     | exeerrordiag: 
[2025-06-05 00:08:39] 2025-06-04 19:02:28,987 | INFO     | exitcode: 0
[2025-06-05 00:08:39] 2025-06-04 19:02:28,987 | INFO     | exitmsg: OK
[2025-06-05 00:08:39] 2025-06-04 19:02:28,987 | INFO     | cpuconsumptiontime: 50899 s
[2025-06-05 00:08:39] 2025-06-04 19:02:28,987 | INFO     | nevents: 400
[2025-06-05 00:08:39] 2025-06-04 19:02:28,988 | INFO     | neventsw: 0
[2025-06-05 00:08:39] 2025-06-04 19:02:28,988 | INFO     | pid: 22241
[2025-06-05 00:08:39] 2025-06-04 19:02:28,988 | INFO     | pgrp: 22241
[2025-06-05 00:08:39] 2025-06-04 19:02:28,988 | INFO     | corecount: 8
[2025-06-05 00:08:39] 2025-06-04 19:02:28,988 | INFO     | event service: False
[2025-06-05 00:08:39] 2025-06-04 19:02:28,988 | INFO     | sizes: {0: 2397172, 1: 2397371, 2: 2397371, 12: 2397399, 23: 2397427, 34: 2397455, 45: 2397611, 55: 2397639, 66: 2397667, 77: 2397695, 86: 2397957, 87: 2398265, 14
[2025-06-05 00:08:39] 2025-06-04 19:02:28,988 | INFO     | --------------------------------------------------
[2025-06-05 00:08:39] 2025-06-04 19:02:28,988 | INFO     | 
[2025-06-05 00:08:39] 2025-06-04 19:02:28,988 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-06-05 00:08:39] 2025-06-04 19:02:29,551 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,551 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,551 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,551 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,551 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,551 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,551 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,552 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,552 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,552 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,552 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,552 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,552 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,552 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,552 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,552 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,552 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,552 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 00:08:39] 2025-06-04 19:02:29,553 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,553 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 00:08:39] 2025-06-04 19:02:29,553 | INFO     | job 6678247016 has completed (purged errors)
[2025-06-05 00:08:39] 2025-06-04 19:02:29,553 | INFO     | overall cleanup function is called
[2025-06-05 00:08:39] 2025-06-04 19:02:30,574 | INFO     | --- collectZombieJob: --- 10, [22241]
[2025-06-05 00:08:39] 2025-06-04 19:02:30,574 | INFO     | zombie collector waiting for pid 22241
[2025-06-05 00:08:39] 2025-06-04 19:02:30,574 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 00:08:39] 2025-06-04 19:02:30,575 | INFO     | collected zombie processes
[2025-06-05 00:08:39] 2025-06-04 19:02:30,575 | INFO     | will attempt to kill all subprocesses of pid=22241
[2025-06-05 00:08:39] 2025-06-04 19:02:30,734 | INFO     | process IDs to be killed: [22241] (in reverse order)
[2025-06-05 00:08:39] 2025-06-04 19:02:31,448 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 00:08:39] 2025-06-04 19:02:31,449 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 00:08:39] 2025-06-04 19:02:31,452 | INFO     | did not find any defunct processes belonging to 22241
[2025-06-05 00:08:39] 2025-06-04 19:02:31,459 | INFO     | did not find any defunct processes belonging to 22241
[2025-06-05 00:08:39] 2025-06-04 19:02:31,459 | INFO     | ready for new job
[2025-06-05 00:08:39] 2025-06-04 19:02:31,459 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 00:08:39] 2025-06-04 19:02:31,461 | INFO     | **************************************
[2025-06-05 00:08:39] 2025-06-04 19:02:31,462 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 00:08:39] 2025-06-04 19:02:31,462 | INFO     | **************************************
[2025-06-05 00:08:39] 2025-06-04 19:02:31,462 | INFO     | 
[2025-06-05 00:08:39] 2025-06-04 19:02:31,463 | INFO     | pilot is running in a VM
[2025-06-05 00:08:39] 2025-06-04 19:02:31,463 | INFO     | architecture information:
[2025-06-05 00:08:39] 2025-06-04 19:02:31,474 | INFO     | executing command: cat /etc/os-release
[2025-06-05 00:08:39] 2025-06-04 19:02:31,617 | INFO     | cat /etc/os-release:
[2025-06-05 00:08:39] NAME="CentOS Linux"
[2025-06-05 00:08:39] VERSION="7 (Core)"
[2025-06-05 00:08:39] ID="centos"
[2025-06-05 00:08:39] ID_LIKE="rhel fedora"
[2025-06-05 00:08:39] VERSION_ID="7"
[2025-06-05 00:08:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 00:08:39] ANSI_COLOR="0;31"
[2025-06-05 00:08:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 00:08:39] HOME_URL="https://www.centos.org/"
[2025-06-05 00:08:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 00:08:39] 
[2025-06-05 00:08:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 00:08:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 00:08:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 00:08:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 00:08:39] 
[2025-06-05 00:08:39] 2025-06-04 19:02:31,618 | INFO     | **************************************
[2025-06-05 00:08:39] 2025-06-04 19:02:32,121 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-06-05 00:08:39] 2025-06-04 19:02:32,387 | INFO     | sufficient remaining disk space (497337499648 B)
[2025-06-05 00:08:39] 2025-06-04 19:02:32,388 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 00:08:39] 2025-06-04 19:02:32,388 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 00:08:39] 2025-06-04 19:02:32,388 | INFO     | update_server=False
[2025-06-05 00:08:39] 2025-06-04 19:02:32,388 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 00:08:39] 2025-06-04 19:02:32,477 | INFO     | all data control threads have been joined
[2025-06-05 00:08:39] 2025-06-04 19:02:32,681 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 00:08:39] 2025-06-04 19:02:32,712 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 00:08:39] 2025-06-04 19:02:32,712 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 00:08:39] 2025-06-04 19:02:32,713 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:08:39] 2025-06-04 19:02:32,713 | INFO     | will abort loop
[2025-06-05 00:08:39] 2025-06-04 19:02:32,816 | INFO     | all job control threads have been joined
[2025-06-05 00:08:39] 2025-06-04 19:02:33,263 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 00:08:39] 2025-06-04 19:02:33,264 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 00:08:39] 2025-06-04 19:02:33,264 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 00:08:39] 2025-06-04 19:02:33,394 | INFO     | [job] retrieve thread has finished
[2025-06-05 00:08:39] 2025-06-04 19:02:33,416 | INFO     | [payload] validate_post thread has finished
[2025-06-05 00:08:39] 2025-06-04 19:02:33,484 | INFO     | [data] control thread has finished
[2025-06-05 00:08:39] 2025-06-04 19:02:33,498 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 00:08:39] 2025-06-04 19:02:33,718 | INFO     | [job] job monitor thread has finished
[2025-06-05 00:08:39] 2025-06-04 19:02:33,814 | INFO     | all payload control threads have been joined
[2025-06-05 00:08:39] 2025-06-04 19:02:33,822 | INFO     | [job] control thread has finished
[2025-06-05 00:08:39] 2025-06-04 19:02:33,846 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 00:08:39] 2025-06-04 19:02:33,853 | INFO     | [job] validate thread has finished
[2025-06-05 00:08:39] 2025-06-04 19:02:34,000 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:08:39] 2025-06-04 19:02:34,016 | INFO     | [payload] failed_post thread has finished
[2025-06-05 00:08:39] 2025-06-04 19:02:34,081 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 00:08:39] 2025-06-04 19:02:34,413 | INFO     | [data] copytool_in thread has finished
[2025-06-05 00:08:39] 2025-06-04 19:02:34,531 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 00:08:39] 2025-06-04 19:02:34,673 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 00:08:39] 2025-06-04 19:02:34,820 | INFO     | [payload] control thread has finished
[2025-06-05 00:08:39] 2025-06-04 19:02:35,006 | INFO     | [job] queue monitor thread has finished
[2025-06-05 00:08:39] 2025-06-04 19:02:35,853 | INFO     | [data] copytool_out thread has finished
[2025-06-05 00:08:39] 2025-06-04 19:02:36,690 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 00:08:39] 2025-06-04 19:02:37,203 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140566538082112)>', '<ExcThread(monitor, started 140565874202368)>']
[2025-06-05 00:08:39] 2025-06-04 19:02:37,286 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 00:08:39] 2025-06-04 19:02:37,286 | INFO     | [monitor] control thread has ended
[2025-06-05 00:08:39] 2025-06-04 19:02:42,229 | INFO     | all workflow threads have been joined
[2025-06-05 00:08:39] 2025-06-04 19:02:42,229 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 00:08:39] 2025-06-04 19:02:42,230 | INFO     | traces error code: 0
[2025-06-05 00:08:39] 2025-06-04 19:02:42,230 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 00:08:39] 2025-06-04 19:02:42,498 [wrapper] ==== pilot stdout END ====
[2025-06-05 00:08:39] 2025-06-04 19:02:42,529 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 00:08:39] 2025-06-04 19:02:42,631 [wrapper] pilotpid: 15669
[2025-06-05 00:08:39] 2025-06-04 19:02:42,682 [wrapper] Pilot exit status: 0
[2025-06-05 00:08:39] 2025-06-04 19:02:42,997 [wrapper] pandaids: 6678247016
[2025-06-05 00:08:39] 2025-06-04 19:02:43,402 [wrapper] cleanup supervisor_pilot 13454 15670
[2025-06-05 00:08:39] 2025-06-04 19:02:43,431 [wrapper] Test setup, not cleaning
[2025-06-05 00:08:39] 2025-06-04 19:02:43,530 [wrapper] apfmon messages muted
[2025-06-05 00:08:39] 2025-06-04 19:02:43,606 [wrapper] ==== wrapper stdout END ====
[2025-06-05 00:08:39] 2025-06-04 19:02:43,720 [wrapper] ==== wrapper stderr END ====
[2025-06-05 00:08:39]  *** Error codes and diagnostics ***
[2025-06-05 00:08:39]     "exeErrorCode": 0,
[2025-06-05 00:08:39]     "exeErrorDiag": "",
[2025-06-05 00:08:39]     "pilotErrorCode": 0,
[2025-06-05 00:08:39]     "pilotErrorDiag": "",
[2025-06-05 00:08:39]  *** Listing of results directory ***
[2025-06-05 00:08:39] total 394964
[2025-06-05 00:08:39] -rw-r--r--. 1 boinc boinc    495897 Jun  4 03:59 pilot3.tar.gz
[2025-06-05 00:08:39] -rwx------. 1 boinc boinc     37140 Jun  4 04:10 runpilot2-wrapper.sh
[2025-06-05 00:08:39] -rw-r--r--. 1 boinc boinc      5111 Jun  4 04:10 queuedata.json
[2025-06-05 00:08:39] -rw-r--r--. 1 boinc boinc       100 Jun  4 16:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 00:08:39] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 16:58 run_atlas
[2025-06-05 00:08:39] -rw-r--r--. 1 boinc boinc       105 Jun  4 16:58 job.xml
[2025-06-05 00:08:39] -rw-r--r--. 2 boinc boinc 217277989 Jun  4 16:58 EVNT.45006593._002018.pool.root.1
[2025-06-05 00:08:39] drwxrwx--x. 2 boinc boinc        68 Jun  4 16:58 shared
[2025-06-05 00:08:39] -rw-r--r--. 2 boinc boinc    508875 Jun  4 16:58 input.tar.gz
[2025-06-05 00:08:39] -rw-r--r--. 1 boinc boinc      6392 Jun  4 16:58 init_data.xml
[2025-06-05 00:08:39] -rw-r--r--. 2 boinc boinc     15093 Jun  4 16:58 start_atlas.sh
[2025-06-05 00:08:39] -rw-r--r--. 1 boinc boinc         0 Jun  4 16:58 boinc_lockfile
[2025-06-05 00:08:39] -rw-r--r--. 1 boinc boinc      2525 Jun  4 16:59 pandaJob.out
[2025-06-05 00:08:39] -rw-------. 1 boinc boinc    987207 Jun  4 17:02 agis_schedconf.cvmfs.json
[2025-06-05 00:08:39] drwx------. 4 boinc boinc      4096 Jun  4 17:03 pilot3
[2025-06-05 00:08:39] -rw-------. 1 boinc boinc 180046634 Jun  4 20:59 HITS.45006595._050344.pool.root.1
[2025-06-05 00:08:39] -rw-r--r--. 1 boinc boinc       531 Jun  4 21:00 boinc_task_state.xml
[2025-06-05 00:08:39] -rw-------. 1 boinc boinc      1019 Jun  4 21:00 memory_monitor_summary.json
[2025-06-05 00:08:39] -rw-------. 1 boinc boinc   1598969 Jun  4 21:00 agis_ddmendpoints.agis.ALL.json
[2025-06-05 00:08:39] -rw-------. 1 boinc boinc    402619 Jun  4 21:00 log.45006595._050344.job.log.tgz.1
[2025-06-05 00:08:39] -rw-------. 1 boinc boinc      7688 Jun  4 21:02 heartbeat.json
[2025-06-05 00:08:39] -rw-------. 1 boinc boinc        95 Jun  4 21:02 pilot_heartbeat.json
[2025-06-05 00:08:39] -rw-------. 1 boinc boinc      4603 Jun  4 21:02 pilotlog.txt
[2025-06-05 00:08:39] -rw-------. 1 boinc boinc   1244191 Jun  4 21:02 log.45006595._050344.job.log.1
[2025-06-05 00:08:39] -rw-------. 1 boinc boinc       357 Jun  4 21:02 output.list
[2025-06-05 00:08:39] -rw-r--r--. 1 boinc boinc       620 Jun  4 21:02 runtime_log
[2025-06-05 00:08:39] -rw-------. 1 boinc boinc   1669120 Jun  4 21:02 result.tar.gz
[2025-06-05 00:08:39] -rw-r--r--. 1 boinc boinc      8673 Jun  4 21:02 runtime_log.err
[2025-06-05 00:08:39] -rw-------. 1 boinc boinc       656 Jun  4 21:02 FMTKDmRlsg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNpmKDmXwLLHn.diag
[2025-06-05 00:08:39] -rw-r--r--. 1 boinc boinc      8192 Jun  5 00:08 boinc_mmap_file
[2025-06-05 00:08:39] -rw-r--r--. 1 boinc boinc        28 Jun  5 00:08 wrapper_checkpoint.txt
[2025-06-05 00:08:39] -rw-r--r--. 1 boinc boinc     20500 Jun  5 00:08 stderr.txt
[2025-06-05 00:08:39] HITS file was successfully produced:
[2025-06-05 00:08:39] -rw-------. 1 boinc boinc 180046634 Jun  4 20:59 shared/HITS.pool.root.1
[2025-06-05 00:08:39]  *** Contents of shared directory: ***
[2025-06-05 00:08:40] total 390164
[2025-06-05 00:08:40] -rw-r--r--. 2 boinc boinc 217277989 Jun  4 16:58 ATLAS.root_0
[2025-06-05 00:08:40] -rw-r--r--. 2 boinc boinc    508875 Jun  4 16:58 input.tar.gz
[2025-06-05 00:08:40] -rw-r--r--. 2 boinc boinc     15093 Jun  4 16:58 start_atlas.sh
[2025-06-05 00:08:40] -rw-------. 1 boinc boinc 180046634 Jun  4 20:59 HITS.pool.root.1
[2025-06-05 00:08:40] -rw-------. 1 boinc boinc   1669120 Jun  4 21:02 result.tar.gz
00:08:41 (11890): run_atlas exited; CPU time 51087.608771
00:08:41 (11890): called boinc_finish(0)

</stderr_txt>
]]>

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