Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:15:53 (12826): wrapper (7.7.26015): starting
17:15:53 (12826): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 17:15:53] Arguments: --nthreads 8
[2025-06-04 17:15:53] Threads: 8
[2025-06-04 17:15:53] Checking for CVMFS
[2025-06-04 17:15:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 17:15:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 17:15:55] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 17:15:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 17:15:56] 2.11.2.0 11156 33391 91088 146783 2 19 15350774 25165824 3528 130560 0 16686948 99.742 21230057 2127 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 17:15:56] CVMFS is ok
[2025-06-04 17:15:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 17:15:56] Checking for apptainer binary...
[2025-06-04 17:15:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 17:15:56] Running /usr/bin/apptainer --version
[2025-06-04 17:15:56] apptainer version 1.3.2-1.el7
[2025-06-04 17:15:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 17:16:08] cg-vwn264.simple-grid.lan
[2025-06-04 17:16:08] apptainer works
[2025-06-04 17:16:08] Set ATHENA_PROC_NUMBER=8
[2025-06-04 17:16:08] Set ATHENA_CORE_NUMBER=8
[2025-06-04 17:16:09] Starting ATLAS job with PandaID=6678246355
[2025-06-04 17:16:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/27 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 21:20:54]  *** The last 200 lines of the pilot log: ***
[2025-06-04 21:20:54] 2025-06-04 19:15:56,359 | INFO     | extracted standard info from prmon json
[2025-06-04 21:20:54] 2025-06-04 19:15:56,359 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 21:20:54] 2025-06-04 19:15:56,359 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 21:20:54] 2025-06-04 19:15:56,359 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 21:20:54] 2025-06-04 19:15:56,360 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 21:20:54] 2025-06-04 19:15:56,365 | INFO     | fitting pss+swap vs Time
[2025-06-04 21:20:54] 2025-06-04 19:15:56,365 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 21:20:54] 2025-06-04 19:15:56,367 | INFO     | sum of deviations: 77651688988.0
[2025-06-04 21:20:54] 2025-06-04 19:15:56,367 | INFO     | mean x: 1749057658.5
[2025-06-04 21:20:54] 2025-06-04 19:15:56,368 | INFO     | mean y: 2421574.072072072
[2025-06-04 21:20:54] 2025-06-04 19:15:56,368 | INFO     | -- intersect: -40031349158.54924
[2025-06-04 21:20:54] 2025-06-04 19:15:56,368 | INFO     | intersect: -40031349158.54924
[2025-06-04 21:20:54] 2025-06-04 19:15:56,368 | INFO     | chi2: 8.33455952442998
[2025-06-04 21:20:54] 2025-06-04 19:15:56,369 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 21:20:54] 2025-06-04 19:15:56,371 | INFO     | sum of deviations: 91101742406.99998
[2025-06-04 21:20:54] 2025-06-04 19:15:56,371 | INFO     | mean x: 1749057506.0
[2025-06-04 21:20:54] 2025-06-04 19:15:56,371 | INFO     | mean y: 2430536.6221198156
[2025-06-04 21:20:54] 2025-06-04 19:15:56,371 | INFO     | -- intersect: -50287654425.41436
[2025-06-04 21:20:54] 2025-06-04 19:15:56,371 | INFO     | intersect: -50287654425.41436
[2025-06-04 21:20:54] 2025-06-04 19:15:56,371 | INFO     | chi2: 7.578025417520184
[2025-06-04 21:20:54] 2025-06-04 19:15:56,372 | INFO     | current chi2=7.578025417520184 (change=9.077073655689535 %)
[2025-06-04 21:20:54] 2025-06-04 19:15:56,372 | INFO     | right removable region: 216
[2025-06-04 21:20:54] 2025-06-04 19:15:56,372 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 21:20:54] 2025-06-04 19:15:56,374 | INFO     | sum of deviations: 200784732.9999962
[2025-06-04 21:20:54] 2025-06-04 19:15:56,374 | INFO     | mean x: 1749057811.0
[2025-06-04 21:20:54] 2025-06-04 19:15:56,374 | INFO     | mean y: 2474245.2119815666
[2025-06-04 21:20:54] 2025-06-04 19:15:56,374 | INFO     | -- intersect: -108363185.28779781
[2025-06-04 21:20:54] 2025-06-04 19:15:56,375 | INFO     | intersect: -108363185.28779781
[2025-06-04 21:20:54] 2025-06-04 19:15:56,375 | INFO     | chi2: 3.1822844769845253
[2025-06-04 21:20:54] 2025-06-04 19:15:56,375 | INFO     | current chi2=3.1822844769845253 (change=61.81820445751548 %)
[2025-06-04 21:20:54] 2025-06-04 19:15:56,376 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 21:20:54] 2025-06-04 19:15:56,377 | INFO     | sum of deviations: -48001498562.499985
[2025-06-04 21:20:54] 2025-06-04 19:15:56,378 | INFO     | mean x: 1749057963.5
[2025-06-04 21:20:54] 2025-06-04 19:15:56,378 | INFO     | mean y: 2508445.4481132077
[2025-06-04 21:20:54] 2025-06-04 19:15:56,378 | INFO     | -- intersect: 28419798124.023273
[2025-06-04 21:20:54] 2025-06-04 19:15:56,378 | INFO     | intersect: 28419798124.023273
[2025-06-04 21:20:54] 2025-06-04 19:15:56,378 | INFO     | chi2: 1.097174313113701
[2025-06-04 21:20:54] 2025-06-04 19:15:56,378 | INFO     | current chi2=1.097174313113701 (change=65.52243141526544 %)
[2025-06-04 21:20:54] 2025-06-04 19:15:56,379 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 21:20:54] 2025-06-04 19:15:56,380 | INFO     | sum of deviations: -51667350018.0
[2025-06-04 21:20:54] 2025-06-04 19:15:56,381 | INFO     | mean x: 1749058116.0
[2025-06-04 21:20:54] 2025-06-04 19:15:56,381 | INFO     | mean y: 2511128.3961352655
[2025-06-04 21:20:54] 2025-06-04 19:15:56,381 | INFO     | -- intersect: 32860509422.43082
[2025-06-04 21:20:54] 2025-06-04 19:15:56,381 | INFO     | intersect: 32860509422.43082
[2025-06-04 21:20:54] 2025-06-04 19:15:56,381 | INFO     | chi2: 1.042325656672888
[2025-06-04 21:20:54] 2025-06-04 19:15:56,382 | INFO     | current chi2=1.042325656672888 (change=4.999083170764046 %)
[2025-06-04 21:20:54] 2025-06-04 19:15:56,382 | INFO     | left removable region: 30
[2025-06-04 21:20:54] 2025-06-04 19:15:56,382 | INFO     | sum of square deviations: 1995283922.5
[2025-06-04 21:20:54] 2025-06-04 19:15:56,383 | INFO     | sum of deviations: -16743978419.500002
[2025-06-04 21:20:54] 2025-06-04 19:15:56,384 | INFO     | mean x: 1749058390.5
[2025-06-04 21:20:54] 2025-06-04 19:15:56,384 | INFO     | mean y: 2506102.1021505375
[2025-06-04 21:20:54] 2025-06-04 19:15:56,384 | INFO     | -- intersect: 14680214680.179167
[2025-06-04 21:20:54] 2025-06-04 19:15:56,384 | INFO     | intersect: 14680214680.179167
[2025-06-04 21:20:54] 2025-06-04 19:15:56,384 | INFO     | chi2: 0.1191417771681786
[2025-06-04 21:20:54] 2025-06-04 19:15:56,385 | INFO     | -- intersect: 14680214680.179167
[2025-06-04 21:20:54] 2025-06-04 19:15:56,385 | INFO     | current memory leak: -8.39 B/s (using 186 data points, chi2=0.12)
[2025-06-04 21:20:54] 2025-06-04 19:15:56,386 | INFO     | ..............................
[2025-06-04 21:20:54] 2025-06-04 19:15:56,386 | INFO     | . Timing measurements:
[2025-06-04 21:20:54] 2025-06-04 19:15:56,386 | INFO     | . get job = 0 s
[2025-06-04 21:20:54] 2025-06-04 19:15:56,386 | INFO     | . initial setup = 14 s
[2025-06-04 21:20:54] 2025-06-04 19:15:56,386 | INFO     | . payload setup = 178 s
[2025-06-04 21:20:54] 2025-06-04 19:15:56,386 | INFO     | . stage-in = 0 s
[2025-06-04 21:20:54] 2025-06-04 19:15:56,386 | INFO     | . payload execution = 13693 s
[2025-06-04 21:20:54] 2025-06-04 19:15:56,386 | INFO     | . stage-out = 3 s
[2025-06-04 21:20:54] 2025-06-04 19:15:56,386 | INFO     | . log creation = 1 s
[2025-06-04 21:20:54] 2025-06-04 19:15:56,386 | INFO     | ..............................
[2025-06-04 21:20:54] 2025-06-04 19:15:56,513 | INFO     | 
[2025-06-04 21:20:54] 2025-06-04 19:15:56,514 | INFO     | job summary report
[2025-06-04 21:20:54] 2025-06-04 19:15:56,514 | INFO     | --------------------------------------------------
[2025-06-04 21:20:54] 2025-06-04 19:15:56,514 | INFO     | PanDA job id: 6678246355
[2025-06-04 21:20:54] 2025-06-04 19:15:56,514 | INFO     | task id: 45006595
[2025-06-04 21:20:54] 2025-06-04 19:15:56,514 | INFO     | errors: (none)
[2025-06-04 21:20:54] 2025-06-04 19:15:56,514 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 21:20:54] 2025-06-04 19:15:56,514 | INFO     | pilot state: finished 
[2025-06-04 21:20:54] 2025-06-04 19:15:56,514 | INFO     | transexitcode: 0
[2025-06-04 21:20:54] 2025-06-04 19:15:56,514 | INFO     | exeerrorcode: 0
[2025-06-04 21:20:54] 2025-06-04 19:15:56,515 | INFO     | exeerrordiag: 
[2025-06-04 21:20:54] 2025-06-04 19:15:56,515 | INFO     | exitcode: 0
[2025-06-04 21:20:54] 2025-06-04 19:15:56,515 | INFO     | exitmsg: OK
[2025-06-04 21:20:54] 2025-06-04 19:15:56,515 | INFO     | cpuconsumptiontime: 50674 s
[2025-06-04 21:20:54] 2025-06-04 19:15:56,515 | INFO     | nevents: 400
[2025-06-04 21:20:54] 2025-06-04 19:15:56,515 | INFO     | neventsw: 0
[2025-06-04 21:20:54] 2025-06-04 19:15:56,515 | INFO     | pid: 23247
[2025-06-04 21:20:54] 2025-06-04 19:15:56,515 | INFO     | pgrp: 23247
[2025-06-04 21:20:54] 2025-06-04 19:15:56,515 | INFO     | corecount: 8
[2025-06-04 21:20:54] 2025-06-04 19:15:56,515 | INFO     | event service: False
[2025-06-04 21:20:54] 2025-06-04 19:15:56,515 | INFO     | sizes: {0: 2397116, 1: 2397200, 2: 2397371, 12: 2397399, 23: 2397427, 34: 2397455, 44: 2397611, 55: 2397639, 66: 2397667, 77: 2397695, 87: 2397751, 96: 2398265, 98
[2025-06-04 21:20:54] 2025-06-04 19:15:56,516 | INFO     | --------------------------------------------------
[2025-06-04 21:20:54] 2025-06-04 19:15:56,516 | INFO     | 
[2025-06-04 21:20:54] 2025-06-04 19:15:56,516 | INFO     | executing command: ls -lF /var/lib/boinc/slots/27
[2025-06-04 21:20:54] 2025-06-04 19:15:57,107 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,107 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,107 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,108 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,108 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,108 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,108 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,108 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,108 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,108 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,108 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,108 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,108 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,109 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,109 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,109 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,109 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,109 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 21:20:54] 2025-06-04 19:15:57,109 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,109 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 21:20:54] 2025-06-04 19:15:57,109 | INFO     | job 6678246355 has completed (purged errors)
[2025-06-04 21:20:54] 2025-06-04 19:15:57,110 | INFO     | overall cleanup function is called
[2025-06-04 21:20:54] 2025-06-04 19:15:58,119 | INFO     | --- collectZombieJob: --- 10, [23247]
[2025-06-04 21:20:54] 2025-06-04 19:15:58,120 | INFO     | zombie collector waiting for pid 23247
[2025-06-04 21:20:54] 2025-06-04 19:15:58,120 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 21:20:54] 2025-06-04 19:15:58,120 | INFO     | collected zombie processes
[2025-06-04 21:20:54] 2025-06-04 19:15:58,120 | INFO     | will attempt to kill all subprocesses of pid=23247
[2025-06-04 21:20:54] 2025-06-04 19:15:58,244 | INFO     | process IDs to be killed: [23247] (in reverse order)
[2025-06-04 21:20:54] 2025-06-04 19:15:59,066 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 21:20:54] 2025-06-04 19:15:59,066 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 21:20:54] 2025-06-04 19:15:59,070 | INFO     | did not find any defunct processes belonging to 23247
[2025-06-04 21:20:54] 2025-06-04 19:15:59,077 | INFO     | did not find any defunct processes belonging to 23247
[2025-06-04 21:20:54] 2025-06-04 19:15:59,077 | INFO     | ready for new job
[2025-06-04 21:20:54] 2025-06-04 19:15:59,078 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 21:20:54] 2025-06-04 19:15:59,080 | INFO     | **************************************
[2025-06-04 21:20:54] 2025-06-04 19:15:59,080 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 21:20:54] 2025-06-04 19:15:59,080 | INFO     | **************************************
[2025-06-04 21:20:54] 2025-06-04 19:15:59,080 | INFO     | 
[2025-06-04 21:20:54] 2025-06-04 19:15:59,081 | INFO     | pilot is running in a VM
[2025-06-04 21:20:54] 2025-06-04 19:15:59,081 | INFO     | architecture information:
[2025-06-04 21:20:54] 2025-06-04 19:15:59,087 | INFO     | executing command: cat /etc/os-release
[2025-06-04 21:20:54] 2025-06-04 19:15:59,352 | INFO     | cat /etc/os-release:
[2025-06-04 21:20:54] NAME="CentOS Linux"
[2025-06-04 21:20:54] VERSION="7 (Core)"
[2025-06-04 21:20:54] ID="centos"
[2025-06-04 21:20:54] ID_LIKE="rhel fedora"
[2025-06-04 21:20:54] VERSION_ID="7"
[2025-06-04 21:20:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 21:20:54] ANSI_COLOR="0;31"
[2025-06-04 21:20:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 21:20:54] HOME_URL="https://www.centos.org/"
[2025-06-04 21:20:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 21:20:54] 
[2025-06-04 21:20:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 21:20:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 21:20:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 21:20:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 21:20:54] 
[2025-06-04 21:20:54] 2025-06-04 19:15:59,352 | INFO     | **************************************
[2025-06-04 21:20:54] 2025-06-04 19:15:59,856 | INFO     | executing command: df -mP /var/lib/boinc/slots/27
[2025-06-04 21:20:54] 2025-06-04 19:16:00,056 | INFO     | sufficient remaining disk space (496816357376 B)
[2025-06-04 21:20:54] 2025-06-04 19:16:00,056 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 21:20:54] 2025-06-04 19:16:00,057 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 21:20:54] 2025-06-04 19:16:00,057 | INFO     | update_server=False
[2025-06-04 21:20:54] 2025-06-04 19:16:00,057 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 21:20:54] 2025-06-04 19:16:00,057 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 21:20:54] 2025-06-04 19:16:00,057 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 21:20:54] 2025-06-04 19:16:00,057 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 21:20:54] 2025-06-04 19:16:00,057 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 21:20:54] 2025-06-04 19:16:00,541 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:20:54] 2025-06-04 19:16:00,542 | INFO     | aborting loop
[2025-06-04 21:20:54] 2025-06-04 19:16:00,654 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 21:20:54] 2025-06-04 19:16:00,783 | INFO     | all data control threads have been joined
[2025-06-04 21:20:54] 2025-06-04 19:16:01,063 | INFO     | [job] retrieve thread has finished
[2025-06-04 21:20:54] 2025-06-04 19:16:01,093 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 21:20:54] 2025-06-04 19:16:01,126 | INFO     | [payload] failed_post thread has finished
[2025-06-04 21:20:54] 2025-06-04 19:16:01,182 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 21:20:54] 2025-06-04 19:16:01,218 | INFO     | [job] validate thread has finished
[2025-06-04 21:20:54] 2025-06-04 19:16:01,274 | INFO     | all payload control threads have been joined
[2025-06-04 21:20:54] 2025-06-04 19:16:01,307 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 21:20:54] 2025-06-04 19:16:01,517 | INFO     | [payload] validate_post thread has finished
[2025-06-04 21:20:54] 2025-06-04 19:16:01,526 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:20:54] 2025-06-04 19:16:01,547 | INFO     | [job] job monitor thread has finished
[2025-06-04 21:20:54] 2025-06-04 19:16:01,713 | INFO     | all job control threads have been joined
[2025-06-04 21:20:54] 2025-06-04 19:16:01,789 | INFO     | [data] control thread has finished
[2025-06-04 21:20:54] 2025-06-04 19:16:01,933 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 21:20:54] 2025-06-04 19:16:02,231 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 21:20:54] 2025-06-04 19:16:02,275 | INFO     | [data] copytool_in thread has finished
[2025-06-04 21:20:54] 2025-06-04 19:16:02,280 | INFO     | [payload] control thread has finished
[2025-06-04 21:20:54] 2025-06-04 19:16:02,532 | INFO     | [job] queue monitor thread has finished
[2025-06-04 21:20:54] 2025-06-04 19:16:02,721 | INFO     | [job] control thread has finished
[2025-06-04 21:20:54] 2025-06-04 19:16:03,314 | INFO     | [data] copytool_out thread has finished
[2025-06-04 21:20:54] 2025-06-04 19:16:04,665 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 21:20:54] 2025-06-04 19:16:05,283 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140282475075392)>', '<ExcThread(monitor, started 140281609447168)>']
[2025-06-04 21:20:54] 2025-06-04 19:16:06,090 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 21:20:54] 2025-06-04 19:16:06,091 | INFO     | [monitor] control thread has ended
[2025-06-04 21:20:54] 2025-06-04 19:16:10,309 | INFO     | all workflow threads have been joined
[2025-06-04 21:20:54] 2025-06-04 19:16:10,310 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 21:20:54] 2025-06-04 19:16:10,310 | INFO     | traces error code: 0
[2025-06-04 21:20:54] 2025-06-04 19:16:10,310 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 21:20:54] 2025-06-04 19:16:10,633 [wrapper] ==== pilot stdout END ====
[2025-06-04 21:20:54] 2025-06-04 19:16:10,666 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 21:20:54] 2025-06-04 19:16:10,696 [wrapper] pilotpid: 16573
[2025-06-04 21:20:54] 2025-06-04 19:16:10,770 [wrapper] Pilot exit status: 0
[2025-06-04 21:20:54] 2025-06-04 19:16:11,254 [wrapper] pandaids: 6678246355
[2025-06-04 21:20:54] 2025-06-04 19:16:12,055 [wrapper] cleanup supervisor_pilot   449 16574
[2025-06-04 21:20:54] 2025-06-04 19:16:12,139 [wrapper] Test setup, not cleaning
[2025-06-04 21:20:54] 2025-06-04 19:16:12,240 [wrapper] apfmon messages muted
[2025-06-04 21:20:54] 2025-06-04 19:16:12,376 [wrapper] ==== wrapper stdout END ====
[2025-06-04 21:20:54] 2025-06-04 19:16:12,475 [wrapper] ==== wrapper stderr END ====
[2025-06-04 21:20:54]  *** Error codes and diagnostics ***
[2025-06-04 21:20:54]     "exeErrorCode": 0,
[2025-06-04 21:20:54]     "exeErrorDiag": "",
[2025-06-04 21:20:54]     "pilotErrorCode": 0,
[2025-06-04 21:20:54]     "pilotErrorDiag": "",
[2025-06-04 21:20:54]  *** Listing of results directory ***
[2025-06-04 21:20:54] total 391912
[2025-06-04 21:20:54] -rw-r--r--. 1 boinc boinc    495897 Jun  4 03:59 pilot3.tar.gz
[2025-06-04 21:20:54] -rwx------. 1 boinc boinc     37140 Jun  4 04:02 runpilot2-wrapper.sh
[2025-06-04 21:20:54] -rw-r--r--. 1 boinc boinc      5111 Jun  4 04:02 queuedata.json
[2025-06-04 21:20:54] -rw-r--r--. 1 boinc boinc       100 Jun  4 17:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 21:20:54] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 17:15 run_atlas
[2025-06-04 21:20:54] -rw-r--r--. 1 boinc boinc       105 Jun  4 17:15 job.xml
[2025-06-04 21:20:54] -rw-r--r--. 2 boinc boinc 214564602 Jun  4 17:15 EVNT.45006593._002007.pool.root.1
[2025-06-04 21:20:54] -rw-r--r--. 1 boinc boinc      6392 Jun  4 17:15 init_data.xml
[2025-06-04 21:20:54] -rw-r--r--. 2 boinc boinc     15093 Jun  4 17:15 start_atlas.sh
[2025-06-04 21:20:54] drwxrwx--x. 2 boinc boinc        68 Jun  4 17:15 shared
[2025-06-04 21:20:54] -rw-r--r--. 2 boinc boinc    508877 Jun  4 17:15 input.tar.gz
[2025-06-04 21:20:54] -rw-r--r--. 1 boinc boinc         0 Jun  4 17:15 boinc_lockfile
[2025-06-04 21:20:54] -rw-r--r--. 1 boinc boinc      2525 Jun  4 17:16 pandaJob.out
[2025-06-04 21:20:54] -rw-------. 1 boinc boinc    987207 Jun  4 17:19 agis_schedconf.cvmfs.json
[2025-06-04 21:20:54] drwx------. 4 boinc boinc      4096 Jun  4 17:19 pilot3
[2025-06-04 21:20:54] -rw-------. 1 boinc boinc 179737504 Jun  4 21:13 HITS.45006595._050062.pool.root.1
[2025-06-04 21:20:54] -rw-r--r--. 1 boinc boinc       531 Jun  4 21:13 boinc_task_state.xml
[2025-06-04 21:20:54] -rw-------. 1 boinc boinc      1028 Jun  4 21:14 memory_monitor_summary.json
[2025-06-04 21:20:54] -rw-------. 1 boinc boinc   1598969 Jun  4 21:14 agis_ddmendpoints.agis.ALL.json
[2025-06-04 21:20:54] -rw-------. 1 boinc boinc    387604 Jun  4 21:14 log.45006595._050062.job.log.tgz.1
[2025-06-04 21:20:54] -rw-------. 1 boinc boinc        95 Jun  4 21:15 pilot_heartbeat.json
[2025-06-04 21:20:54] -rw-------. 1 boinc boinc      7689 Jun  4 21:15 heartbeat.json
[2025-06-04 21:20:54] -rw-------. 1 boinc boinc      4540 Jun  4 21:16 pilotlog.txt
[2025-06-04 21:20:54] -rw-------. 1 boinc boinc   1206457 Jun  4 21:16 log.45006595._050062.job.log.1
[2025-06-04 21:20:54] -rw-------. 1 boinc boinc       357 Jun  4 21:16 output.list
[2025-06-04 21:20:54] -rw-r--r--. 1 boinc boinc       620 Jun  4 21:16 runtime_log
[2025-06-04 21:20:54] -rw-------. 1 boinc boinc   1617920 Jun  4 21:16 result.tar.gz
[2025-06-04 21:20:54] -rw-------. 1 boinc boinc       657 Jun  4 21:16 YrJKDmUdsg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmYUaKDm1TQd8m.diag
[2025-06-04 21:20:54] -rw-r--r--. 1 boinc boinc      8673 Jun  4 21:16 runtime_log.err
[2025-06-04 21:20:54] -rw-r--r--. 1 boinc boinc      8192 Jun  4 21:20 boinc_mmap_file
[2025-06-04 21:20:54] -rw-r--r--. 1 boinc boinc        28 Jun  4 21:20 wrapper_checkpoint.txt
[2025-06-04 21:20:54] -rw-r--r--. 1 boinc boinc     20514 Jun  4 21:20 stderr.txt
[2025-06-04 21:20:54] HITS file was successfully produced:
[2025-06-04 21:20:54] -rw-------. 1 boinc boinc 179737504 Jun  4 21:13 shared/HITS.pool.root.1
[2025-06-04 21:20:54]  *** Contents of shared directory: ***
[2025-06-04 21:20:54] total 387160
[2025-06-04 21:20:54] -rw-r--r--. 2 boinc boinc 214564602 Jun  4 17:15 ATLAS.root_0
[2025-06-04 21:20:54] -rw-r--r--. 2 boinc boinc     15093 Jun  4 17:15 start_atlas.sh
[2025-06-04 21:20:54] -rw-r--r--. 2 boinc boinc    508877 Jun  4 17:15 input.tar.gz
[2025-06-04 21:20:54] -rw-------. 1 boinc boinc 179737504 Jun  4 21:13 HITS.pool.root.1
[2025-06-04 21:20:54] -rw-------. 1 boinc boinc   1617920 Jun  4 21:16 result.tar.gz
21:20:56 (12826): run_atlas exited; CPU time 50871.388712
21:20:56 (12826): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN