Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:31:44 (1187915): wrapper (7.7.26015): starting
18:31:44 (1187915): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 18:31:44] Arguments: --nthreads 4
[2025-06-05 18:31:44] Threads: 4
[2025-06-05 18:31:44] Checking for CVMFS
[2025-06-05 18:31:44] No cvmfs_config command found, will try listing directly
[2025-06-05 18:31:44] CVMFS is ok
[2025-06-05 18:31:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 18:31:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 18:31:44] Further information can be found at the LHC@home message board.
[2025-06-05 18:31:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 18:31:44] Checking for apptainer binary...
[2025-06-05 18:31:44] which: no apptainer in ((null))
[2025-06-05 18:31:44] apptainer is not installed, using version from CVMFS
[2025-06-05 18:31:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 18:31:44] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-06-05 18:31:44] apptainer works
[2025-06-05 18:31:44] Set ATHENA_PROC_NUMBER=4
[2025-06-05 18:31:44] Set ATHENA_CORE_NUMBER=4
[2025-06-05 18:31:44] Starting ATLAS job with PandaID=6678154269
[2025-06-05 18:31:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:42:26 (13653): wrapper (7.7.26015): starting
18:42:26 (13653): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 18:42:26] Arguments: --nthreads 4
[2025-06-05 18:42:26] Threads: 4
[2025-06-05 18:42:26] This job has been restarted, cleaning up previous attempt
[2025-06-05 18:42:26] Checking for CVMFS
[2025-06-05 18:42:26] No cvmfs_config command found, will try listing directly
[2025-06-05 18:42:26] CVMFS is ok
[2025-06-05 18:42:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 18:42:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 18:42:26] Further information can be found at the LHC@home message board.
[2025-06-05 18:42:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 18:42:26] Checking for apptainer binary...
[2025-06-05 18:42:26] which: no apptainer in ((null))
[2025-06-05 18:42:26] apptainer is not installed, using version from CVMFS
[2025-06-05 18:42:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 18:42:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-06-05 18:42:27] apptainer works
[2025-06-05 18:42:27] Set ATHENA_PROC_NUMBER=4
[2025-06-05 18:42:27] Set ATHENA_CORE_NUMBER=4
[2025-06-05 18:42:27] Starting ATLAS job with PandaID=6678154269
[2025-06-05 18:42:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 20:52:17]  *** The last 200 lines of the pilot log: ***
[2025-06-05 20:52:17] 2025-06-05 18:49:48,620 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6678154269/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 20:52:17] 2025-06-05 18:49:48,621 | INFO     | extracted standard info from prmon json
[2025-06-05 20:52:17] 2025-06-05 18:49:48,621 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 20:52:17] 2025-06-05 18:49:48,621 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 20:52:17] 2025-06-05 18:49:48,622 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 20:52:17] 2025-06-05 18:49:48,622 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 20:52:17] 2025-06-05 18:49:48,624 | INFO     | fitting pss+swap vs Time
[2025-06-05 20:52:17] 2025-06-05 18:49:48,625 | INFO     | sum of square deviations: 605592750.0
[2025-06-05 20:52:17] 2025-06-05 18:49:48,625 | INFO     | sum of deviations: 10686079978.99999
[2025-06-05 20:52:17] 2025-06-05 18:49:48,625 | INFO     | mean x: 1749145578.0
[2025-06-05 20:52:17] 2025-06-05 18:49:48,626 | INFO     | mean y: 2271530.44
[2025-06-05 20:52:17] 2025-06-05 18:49:48,626 | INFO     | -- intersect: -30862545694.37349
[2025-06-05 20:52:17] 2025-06-05 18:49:48,626 | INFO     | intersect: -30862545694.37349
[2025-06-05 20:52:17] 2025-06-05 18:49:48,626 | INFO     | chi2: 2.271775600279573
[2025-06-05 20:52:17] 2025-06-05 18:49:48,626 | INFO     | sum of square deviations: 535786790.0
[2025-06-05 20:52:17] 2025-06-05 18:49:48,627 | INFO     | sum of deviations: 17517868217.499996
[2025-06-05 20:52:17] 2025-06-05 18:49:48,627 | INFO     | mean x: 1749145425.5
[2025-06-05 20:52:17] 2025-06-05 18:49:48,627 | INFO     | mean y: 2285924.2916666665
[2025-06-05 20:52:17] 2025-06-05 18:49:48,627 | INFO     | -- intersect: -57187065565.975494
[2025-06-05 20:52:17] 2025-06-05 18:49:48,627 | INFO     | intersect: -57187065565.975494
[2025-06-05 20:52:17] 2025-06-05 18:49:48,627 | INFO     | chi2: 1.5336269218147949
[2025-06-05 20:52:17] 2025-06-05 18:49:48,627 | INFO     | current chi2=1.5336269218147949 (change=32.49214748032063 %)
[2025-06-05 20:52:17] 2025-06-05 18:49:48,628 | INFO     | sum of square deviations: 471562330.0
[2025-06-05 20:52:17] 2025-06-05 18:49:48,628 | INFO     | sum of deviations: 16703759686.0
[2025-06-05 20:52:17] 2025-06-05 18:49:48,628 | INFO     | mean x: 1749145273.0
[2025-06-05 20:52:17] 2025-06-05 18:49:48,628 | INFO     | mean y: 2283990.0173913045
[2025-06-05 20:52:17] 2025-06-05 18:49:48,628 | INFO     | -- intersect: -61956232280.980896
[2025-06-05 20:52:17] 2025-06-05 18:49:48,628 | INFO     | intersect: -61956232280.980896
[2025-06-05 20:52:17] 2025-06-05 18:49:48,629 | INFO     | chi2: 1.5358361436555705
[2025-06-05 20:52:17] 2025-06-05 18:49:48,629 | INFO     | current chi2=1.5358361436555705 (change=-0.1440521035038564 %)
[2025-06-05 20:52:17] 2025-06-05 18:49:48,629 | INFO     | right removable region: 114
[2025-06-05 20:52:17] 2025-06-05 18:49:48,629 | INFO     | sum of square deviations: 535786790.0
[2025-06-05 20:52:17] 2025-06-05 18:49:48,630 | INFO     | sum of deviations: -6493961790.0
[2025-06-05 20:52:17] 2025-06-05 18:49:48,630 | INFO     | mean x: 1749145730.5
[2025-06-05 20:52:17] 2025-06-05 18:49:48,630 | INFO     | mean y: 2308310.15
[2025-06-05 20:52:17] 2025-06-05 18:49:48,630 | INFO     | -- intersect: 21202692028.09989
[2025-06-05 20:52:17] 2025-06-05 18:49:48,630 | INFO     | intersect: 21202692028.09989
[2025-06-05 20:52:17] 2025-06-05 18:49:48,630 | INFO     | chi2: 0.7716861753281267
[2025-06-05 20:52:17] 2025-06-05 18:49:48,630 | INFO     | current chi2=0.7716861753281267 (change=66.0315844913045 %)
[2025-06-05 20:52:17] 2025-06-05 18:49:48,630 | INFO     | sum of square deviations: 471562330.0
[2025-06-05 20:52:17] 2025-06-05 18:49:48,631 | INFO     | sum of deviations: -6661542454.0
[2025-06-05 20:52:17] 2025-06-05 18:49:48,631 | INFO     | mean x: 1749145883.0
[2025-06-05 20:52:17] 2025-06-05 18:49:48,631 | INFO     | mean y: 2308700.208695652
[2025-06-05 20:52:17] 2025-06-05 18:49:48,631 | INFO     | -- intersect: 24711681812.865543
[2025-06-05 20:52:17] 2025-06-05 18:49:48,631 | INFO     | intersect: 24711681812.865543
[2025-06-05 20:52:17] 2025-06-05 18:49:48,632 | INFO     | chi2: 0.7717711599850037
[2025-06-05 20:52:17] 2025-06-05 18:49:48,632 | INFO     | current chi2=0.7717711599850037 (change=-0.011012852062675776 %)
[2025-06-05 20:52:17] 2025-06-05 18:49:48,632 | INFO     | left removable region: 20
[2025-06-05 20:52:17] 2025-06-05 18:49:48,632 | INFO     | sum of square deviations: 257521107.5
[2025-06-05 20:52:17] 2025-06-05 18:49:48,632 | INFO     | sum of deviations: 77750203.50000001
[2025-06-05 20:52:17] 2025-06-05 18:49:48,633 | INFO     | mean x: 1749145852.5
[2025-06-05 20:52:17] 2025-06-05 18:49:48,633 | INFO     | mean y: 2326240.3936170214
[2025-06-05 20:52:17] 2025-06-05 18:49:48,633 | INFO     | -- intersect: -525772008.72973305
[2025-06-05 20:52:17] 2025-06-05 18:49:48,633 | INFO     | intersect: -525772008.72973305
[2025-06-05 20:52:17] 2025-06-05 18:49:48,633 | INFO     | chi2: 0.0005343465697269542
[2025-06-05 20:52:17] 2025-06-05 18:49:48,633 | INFO     | -- intersect: -525772008.72973305
[2025-06-05 20:52:17] 2025-06-05 18:49:48,633 | INFO     | current memory leak: 0.30 B/s (using 94 data points, chi2=0.00)
[2025-06-05 20:52:17] 2025-06-05 18:49:48,634 | INFO     | ..............................
[2025-06-05 20:52:17] 2025-06-05 18:49:48,634 | INFO     | . Timing measurements:
[2025-06-05 20:52:17] 2025-06-05 18:49:48,634 | INFO     | . get job = 0 s
[2025-06-05 20:52:17] 2025-06-05 18:49:48,634 | INFO     | . initial setup = 1 s
[2025-06-05 20:52:17] 2025-06-05 18:49:48,634 | INFO     | . payload setup = 8 s
[2025-06-05 20:52:17] 2025-06-05 18:49:48,634 | INFO     | . stage-in = 0 s
[2025-06-05 20:52:17] 2025-06-05 18:49:48,634 | INFO     | . payload execution = 7591 s
[2025-06-05 20:52:17] 2025-06-05 18:49:48,634 | INFO     | . stage-out = 0 s
[2025-06-05 20:52:17] 2025-06-05 18:49:48,634 | INFO     | . log creation = 0 s
[2025-06-05 20:52:17] 2025-06-05 18:49:48,634 | INFO     | ..............................
[2025-06-05 20:52:17] 2025-06-05 18:49:48,729 | INFO     | 
[2025-06-05 20:52:17] 2025-06-05 18:49:48,729 | INFO     | job summary report
[2025-06-05 20:52:17] 2025-06-05 18:49:48,729 | INFO     | --------------------------------------------------
[2025-06-05 20:52:17] 2025-06-05 18:49:48,730 | INFO     | PanDA job id: 6678154269
[2025-06-05 20:52:17] 2025-06-05 18:49:48,730 | INFO     | task id: 45006595
[2025-06-05 20:52:17] 2025-06-05 18:49:48,730 | INFO     | errors: (none)
[2025-06-05 20:52:17] 2025-06-05 18:49:48,730 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 20:52:17] 2025-06-05 18:49:48,730 | INFO     | pilot state: finished 
[2025-06-05 20:52:17] 2025-06-05 18:49:48,730 | INFO     | transexitcode: 0
[2025-06-05 20:52:17] 2025-06-05 18:49:48,730 | INFO     | exeerrorcode: 0
[2025-06-05 20:52:17] 2025-06-05 18:49:48,730 | INFO     | exeerrordiag: 
[2025-06-05 20:52:17] 2025-06-05 18:49:48,730 | INFO     | exitcode: 0
[2025-06-05 20:52:17] 2025-06-05 18:49:48,730 | INFO     | exitmsg: OK
[2025-06-05 20:52:17] 2025-06-05 18:49:48,730 | INFO     | cpuconsumptiontime: 28836 s
[2025-06-05 20:52:17] 2025-06-05 18:49:48,730 | INFO     | nevents: 400
[2025-06-05 20:52:17] 2025-06-05 18:49:48,731 | INFO     | neventsw: 0
[2025-06-05 20:52:17] 2025-06-05 18:49:48,731 | INFO     | pid: 305834
[2025-06-05 20:52:17] 2025-06-05 18:49:48,731 | INFO     | pgrp: 305834
[2025-06-05 20:52:17] 2025-06-05 18:49:48,731 | INFO     | corecount: 4
[2025-06-05 20:52:17] 2025-06-05 18:49:48,731 | INFO     | event service: False
[2025-06-05 20:52:17] 2025-06-05 18:49:48,731 | INFO     | sizes: {0: 2397303, 5: 2397509, 11: 2397565, 7605: 2434244, 7606: 2434244, 7613: 2434414}
[2025-06-05 20:52:17] 2025-06-05 18:49:48,731 | INFO     | --------------------------------------------------
[2025-06-05 20:52:17] 2025-06-05 18:49:48,731 | INFO     | 
[2025-06-05 20:52:17] 2025-06-05 18:49:48,731 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-06-05 20:52:17] 2025-06-05 18:49:48,760 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,760 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,760 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,760 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,760 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,761 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,761 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,761 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,761 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,761 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,761 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,761 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,761 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,761 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,761 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,762 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,762 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,762 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 20:52:17] 2025-06-05 18:49:48,762 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,762 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 20:52:17] 2025-06-05 18:49:48,762 | INFO     | job 6678154269 has completed (purged errors)
[2025-06-05 20:52:17] 2025-06-05 18:49:48,762 | INFO     | overall cleanup function is called
[2025-06-05 20:52:17] 2025-06-05 18:49:49,771 | INFO     | --- collectZombieJob: --- 10, [305834]
[2025-06-05 20:52:17] 2025-06-05 18:49:49,771 | INFO     | zombie collector waiting for pid 305834
[2025-06-05 20:52:17] 2025-06-05 18:49:49,772 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 20:52:17] 2025-06-05 18:49:49,772 | INFO     | collected zombie processes
[2025-06-05 20:52:17] 2025-06-05 18:49:49,772 | INFO     | will attempt to kill all subprocesses of pid=305834
[2025-06-05 20:52:17] 2025-06-05 18:49:50,430 | INFO     | process IDs to be killed: [305834] (in reverse order)
[2025-06-05 20:52:17] 2025-06-05 18:49:50,687 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 20:52:17] 2025-06-05 18:49:50,687 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 20:52:17] 2025-06-05 18:49:50,714 | INFO     | did not find any defunct processes belonging to 305834
[2025-06-05 20:52:17] 2025-06-05 18:49:50,740 | INFO     | did not find any defunct processes belonging to 305834
[2025-06-05 20:52:17] 2025-06-05 18:49:50,740 | INFO     | ready for new job
[2025-06-05 20:52:17] 2025-06-05 18:49:50,741 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 20:52:17] 2025-06-05 18:49:50,742 | INFO     | **************************************
[2025-06-05 20:52:17] 2025-06-05 18:49:50,742 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 20:52:17] 2025-06-05 18:49:50,743 | INFO     | **************************************
[2025-06-05 20:52:17] 2025-06-05 18:49:50,743 | INFO     | 
[2025-06-05 20:52:17] 2025-06-05 18:49:50,750 | INFO     | architecture information:
[2025-06-05 20:52:17] 2025-06-05 18:49:50,751 | INFO     | executing command: cat /etc/os-release
[2025-06-05 20:52:17] 2025-06-05 18:49:50,773 | INFO     | cat /etc/os-release:
[2025-06-05 20:52:17] NAME="CentOS Linux"
[2025-06-05 20:52:17] VERSION="7 (Core)"
[2025-06-05 20:52:17] ID="centos"
[2025-06-05 20:52:17] ID_LIKE="rhel fedora"
[2025-06-05 20:52:17] VERSION_ID="7"
[2025-06-05 20:52:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 20:52:17] ANSI_COLOR="0;31"
[2025-06-05 20:52:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 20:52:17] HOME_URL="https://www.centos.org/"
[2025-06-05 20:52:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 20:52:17] 
[2025-06-05 20:52:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 20:52:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 20:52:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 20:52:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 20:52:17] 
[2025-06-05 20:52:17] 2025-06-05 18:49:50,774 | INFO     | **************************************
[2025-06-05 20:52:17] 2025-06-05 18:49:51,276 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-06-05 20:52:17] 2025-06-05 18:49:51,300 | INFO     | sufficient remaining disk space (3324359213056 B)
[2025-06-05 20:52:17] 2025-06-05 18:49:51,300 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 20:52:17] 2025-06-05 18:49:51,300 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 20:52:17] 2025-06-05 18:49:51,300 | INFO     | update_server=False
[2025-06-05 20:52:17] 2025-06-05 18:49:51,300 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 20:52:17] 2025-06-05 18:49:51,301 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 20:52:17] 2025-06-05 18:49:51,301 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 20:52:17] 2025-06-05 18:49:51,301 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 20:52:17] 2025-06-05 18:49:51,302 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 20:52:17] 2025-06-05 18:49:51,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 20:52:17] 2025-06-05 18:49:51,631 | INFO     | aborting loop
[2025-06-05 20:52:17] 2025-06-05 18:49:51,633 | INFO     | all data control threads have been joined
[2025-06-05 20:52:17] 2025-06-05 18:49:51,700 | INFO     | all payload control threads have been joined
[2025-06-05 20:52:17] 2025-06-05 18:49:51,727 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 20:52:17] 2025-06-05 18:49:52,306 | INFO     | [job] retrieve thread has finished
[2025-06-05 20:52:17] 2025-06-05 18:49:52,369 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 20:52:17] 2025-06-05 18:49:52,438 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 20:52:17] 2025-06-05 18:49:52,636 | INFO     | [job] job monitor thread has finished
[2025-06-05 20:52:17] 2025-06-05 18:49:52,638 | INFO     | [data] control thread has finished
[2025-06-05 20:52:17] 2025-06-05 18:49:52,678 | INFO     | [payload] validate_post thread has finished
[2025-06-05 20:52:17] 2025-06-05 18:49:52,705 | INFO     | [payload] control thread has finished
[2025-06-05 20:52:17] 2025-06-05 18:49:52,746 | INFO     | all job control threads have been joined
[2025-06-05 20:52:17] 2025-06-05 18:49:53,333 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 20:52:17] 2025-06-05 18:49:53,475 | INFO     | [job] validate thread has finished
[2025-06-05 20:52:17] 2025-06-05 18:49:53,640 | INFO     | [payload] failed_post thread has finished
[2025-06-05 20:52:17] 2025-06-05 18:49:53,699 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 20:52:17] 2025-06-05 18:49:53,732 | INFO     | [data] copytool_out thread has finished
[2025-06-05 20:52:17] 2025-06-05 18:49:53,739 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 20:52:17] 2025-06-05 18:49:53,751 | INFO     | [job] control thread has finished
[2025-06-05 20:52:17] 2025-06-05 18:49:53,756 | INFO     | [data] copytool_in thread has finished
[2025-06-05 20:52:17] 2025-06-05 18:49:53,760 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 20:52:17] 2025-06-05 18:49:54,740 | INFO     | [job] queue monitor thread has finished
[2025-06-05 20:52:17] 2025-06-05 18:49:56,444 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 20:52:17] 2025-06-05 18:49:58,244 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22726866990912)>', '<ExcThread(monitor, started 22726630663936)>']
[2025-06-05 20:52:17] 2025-06-05 18:49:58,336 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 20:52:17] 2025-06-05 18:49:58,336 | INFO     | [monitor] control thread has ended
[2025-06-05 20:52:17] 2025-06-05 18:50:03,269 | INFO     | all workflow threads have been joined
[2025-06-05 20:52:17] 2025-06-05 18:50:03,269 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 20:52:17] 2025-06-05 18:50:03,270 | INFO     | traces error code: 0
[2025-06-05 20:52:17] 2025-06-05 18:50:03,270 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 20:52:17] 2025-06-05 18:50:03,399 [wrapper] ==== pilot stdout END ====
[2025-06-05 20:52:17] 2025-06-05 18:50:03,403 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 20:52:17] 2025-06-05 18:50:03,407 [wrapper] pilotpid: 117116
[2025-06-05 20:52:17] 2025-06-05 18:50:03,411 [wrapper] Pilot exit status: 0
[2025-06-05 20:52:17] 2025-06-05 18:50:03,425 [wrapper] pandaids: 6678154269 6678154269
[2025-06-05 20:52:17] 2025-06-05 18:50:03,582 [wrapper] cleanup supervisor_pilot  989534 117122
[2025-06-05 20:52:17] 2025-06-05 18:50:03,587 [wrapper] Test setup, not cleaning
[2025-06-05 20:52:17] 2025-06-05 18:50:03,591 [wrapper] apfmon messages muted
[2025-06-05 20:52:17] 2025-06-05 18:50:03,595 [wrapper] ==== wrapper stdout END ====
[2025-06-05 20:52:17] 2025-06-05 18:50:03,599 [wrapper] ==== wrapper stderr END ====
[2025-06-05 20:52:17]  *** Error codes and diagnostics ***
[2025-06-05 20:52:17]     "exeErrorCode": 0,
[2025-06-05 20:52:17]     "exeErrorDiag": "",
[2025-06-05 20:52:17]     "pilotErrorCode": 0,
[2025-06-05 20:52:17]     "pilotErrorDiag": "",
[2025-06-05 20:52:17]  *** Listing of results directory ***
[2025-06-05 20:52:17] total 594924
[2025-06-05 20:52:17] drwx------ 4 boinc boinc      4096 Apr  3 10:00 pilot3
[2025-06-05 20:52:17] -rw-r--r-- 1 boinc boinc    495897 Jun  4 00:42 pilot3.tar.gz
[2025-06-05 20:52:17] -rw-r--r-- 1 boinc boinc      5111 Jun  4 00:45 queuedata.json
[2025-06-05 20:52:17] -rwx------ 1 boinc boinc     37140 Jun  4 00:45 runpilot2-wrapper.sh
[2025-06-05 20:52:17] -rw-r--r-- 1 boinc boinc       100 Jun  5 18:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 20:52:17] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 18:31 run_atlas
[2025-06-05 20:52:17] -rw-r--r-- 1 boinc boinc       105 Jun  5 18:31 job.xml
[2025-06-05 20:52:17] -rw-r--r-- 3 boinc boinc 214098287 Jun  5 18:31 EVNT.45006593._001910.pool.root.1
[2025-06-05 20:52:17] -rw-r--r-- 3 boinc boinc 214098287 Jun  5 18:31 ATLAS.root_0
[2025-06-05 20:52:17] -rw-r--r-- 2 boinc boinc     15093 Jun  5 18:31 start_atlas.sh
[2025-06-05 20:52:17] drwxrwx--x 2 boinc boinc      4096 Jun  5 18:31 shared
[2025-06-05 20:52:17] -rw-r--r-- 2 boinc boinc    508880 Jun  5 18:31 input.tar.gz
[2025-06-05 20:52:17] -rw-r--r-- 1 boinc boinc         0 Jun  5 18:31 boinc_lockfile
[2025-06-05 20:52:17] -rw------- 1 boinc boinc   1598969 Jun  5 18:31 agis_ddmendpoints.agis.ALL.json
[2025-06-05 20:52:17] -rw-r--r-- 1 boinc boinc      2524 Jun  5 18:42 pandaJob.out
[2025-06-05 20:52:17] -rw------- 1 boinc boinc    983229 Jun  5 18:42 agis_schedconf.cvmfs.json
[2025-06-05 20:52:17] -rw-r--r-- 1 boinc boinc      6687 Jun  5 18:42 init_data.xml
[2025-06-05 20:52:17] -rw------- 1 boinc boinc        96 Jun  5 20:48 pilot_heartbeat.json
[2025-06-05 20:52:17] -rw------- 1 boinc boinc 175195530 Jun  5 20:49 HITS.45006595._047589.pool.root.1
[2025-06-05 20:52:17] -rw-r--r-- 1 boinc boinc       529 Jun  5 20:49 boinc_task_state.xml
[2025-06-05 20:52:17] -rw------- 1 boinc boinc      1039 Jun  5 20:49 memory_monitor_summary.json
[2025-06-05 20:52:17] -rw------- 1 boinc boinc    263510 Jun  5 20:49 log.45006595._047589.job.log.tgz.1
[2025-06-05 20:52:17] -rw------- 1 boinc boinc      7718 Jun  5 20:49 heartbeat.json
[2025-06-05 20:52:17] -rw------- 1 boinc boinc      4488 Jun  5 20:50 pilotlog.txt
[2025-06-05 20:52:17] -rw------- 1 boinc boinc    718972 Jun  5 20:50 log.45006595._047589.job.log.1
[2025-06-05 20:52:17] -rw------- 1 boinc boinc       357 Jun  5 20:50 output.list
[2025-06-05 20:52:17] -rw-r--r-- 1 boinc boinc       620 Jun  5 20:50 runtime_log
[2025-06-05 20:52:17] -rw------- 1 boinc boinc   1003520 Jun  5 20:50 result.tar.gz
[2025-06-05 20:52:17] -rw-r--r-- 1 boinc boinc      9117 Jun  5 20:50 runtime_log.err
[2025-06-05 20:52:17] -rw------- 1 boinc boinc       792 Jun  5 20:50 8eZMDmNZpg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8QmKDmohW6Xm.diag
[2025-06-05 20:52:17] -rw-r--r-- 1 boinc boinc        27 Jun  5 20:51 wrapper_checkpoint.txt
[2025-06-05 20:52:17] -rw-r--r-- 1 boinc boinc      8192 Jun  5 20:52 boinc_mmap_file
[2025-06-05 20:52:17] -rw-r--r-- 1 boinc boinc     22518 Jun  5 20:52 stderr.txt
[2025-06-05 20:52:17] HITS file was successfully produced:
[2025-06-05 20:52:17] -rw------- 1 boinc boinc 175195530 Jun  5 20:49 shared/HITS.pool.root.1
[2025-06-05 20:52:17]  *** Contents of shared directory: ***
[2025-06-05 20:52:17] total 381680
[2025-06-05 20:52:17] -rw-r--r-- 3 boinc boinc 214098287 Jun  5 18:31 ATLAS.root_0
[2025-06-05 20:52:17] -rw-r--r-- 2 boinc boinc     15093 Jun  5 18:31 start_atlas.sh
[2025-06-05 20:52:17] -rw-r--r-- 2 boinc boinc    508880 Jun  5 18:31 input.tar.gz
[2025-06-05 20:52:17] -rw------- 1 boinc boinc 175195530 Jun  5 20:49 HITS.pool.root.1
[2025-06-05 20:52:17] -rw------- 1 boinc boinc   1003520 Jun  5 20:50 result.tar.gz
20:52:18 (13653): run_atlas exited; CPU time 29207.311622
20:52:18 (13653): called boinc_finish(0)

</stderr_txt>
]]>

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