Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:26:41 (811099): wrapper (7.7.26015): starting
02:26:41 (811099): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 02:26:41] Arguments: --nthreads 8
[2025-06-04 02:26:41] Threads: 8
[2025-06-04 02:26:41] Checking for CVMFS
[2025-06-04 02:26:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 02:26:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 02:26:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 02:26:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 02:26:41] 2.12.6.0 46158 23409 275668 146771 0 240 29217413 40960001 39132 16776704 0 350172909 99.769 208914924 34248 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 02:26:41] CVMFS is ok
[2025-06-04 02:26:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 02:26:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 02:26:41] Further information can be found at the LHC@home message board.
[2025-06-04 02:26:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 02:26:41] Checking for apptainer binary...
[2025-06-04 02:26:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 02:26:41] Running /usr/bin/apptainer --version
[2025-06-04 02:26:41] apptainer version 1.4.1-1.el9
[2025-06-04 02:26:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 02:26:42] c8-6-11.aglt2.org
[2025-06-04 02:26:42] apptainer works
[2025-06-04 02:26:42] Set ATHENA_PROC_NUMBER=8
[2025-06-04 02:26:42] Set ATHENA_CORE_NUMBER=8
[2025-06-04 02:26:42] Starting ATLAS job with PandaID=6678246961
[2025-06-04 02:26:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 03:18:37]  *** The last 200 lines of the pilot log: ***
[2025-06-04 03:18:37]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 03:18:37]  is_altstaged=None
[2025-06-04 03:18:37]  is_tar=False
[2025-06-04 03:18:37]  lfn=log.45006595._050289.job.log.tgz.1
[2025-06-04 03:18:37]  mtime=0
[2025-06-04 03:18:37]  protocol_id=None
[2025-06-04 03:18:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 03:18:37]  replicas=None
[2025-06-04 03:18:37]  scope=mc23_13p6TeV
[2025-06-04 03:18:37]  status=None
[2025-06-04 03:18:37]  status_code=0
[2025-06-04 03:18:37]  storage_token=
[2025-06-04 03:18:37]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6678246961/log.45006595._050289.job.log.tgz.1
[2025-06-04 03:18:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/d0/log.45006595._050289.job.log.tgz.1
[2025-06-04 03:18:37]  workdir=None
[2025-06-04 03:18:37] ]
[2025-06-04 03:18:37] 2025-06-04 07:18:10,736 | INFO     | monitor loop #222: job 0:6678246961 is in state 'stageout'
[2025-06-04 03:18:37] 2025-06-04 07:18:10,736 | WARNING  | aborting job monitor tasks since payload process 842059 is not running
[2025-06-04 03:18:37] 2025-06-04 07:18:10,750 | INFO     | transferring file log.45006595._050289.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6678246961/log.45006595._050289.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 03:18:37] 2025-06-04 07:18:10,751 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6678246961/log.45006595._050289.job.log.tgz.1 /tmp/boinchome/slots/2/log.45006595._050289.job
[2025-06-04 03:18:37] 2025-06-04 07:18:10,771 | INFO     | adding to output.list: log.45006595._050289.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/d0/log.45006595._050289.job.log.tg
[2025-06-04 03:18:37] 2025-06-04 07:18:10,771 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 03:18:37] 2025-06-04 07:18:10,771 | INFO     | summary of transferred files:
[2025-06-04 03:18:37] 2025-06-04 07:18:10,771 | INFO     |  -- lfn=log.45006595._050289.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 03:18:37] 2025-06-04 07:18:10,772 | INFO     | stage-out finished correctly
[2025-06-04 03:18:37] 2025-06-04 07:18:10,872 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 03:18:37] 2025-06-04 07:18:11,687 | INFO     | job 6678246961 has state=finished
[2025-06-04 03:18:37] 2025-06-04 07:18:11,687 | INFO     | preparing for final server update for job 6678246961 in state='finished'
[2025-06-04 03:18:37] 2025-06-04 07:18:11,688 | INFO     | this job has now completed (state=finished)
[2025-06-04 03:18:37] 2025-06-04 07:18:11,688 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 03:18:37] 2025-06-04 07:18:11,688 | INFO     | log transfer has been attempted: DONE
[2025-06-04 03:18:37] 2025-06-04 07:18:11,688 | INFO     | job 6678246961 has finished - writing final server update
[2025-06-04 03:18:37] 2025-06-04 07:18:11,688 | INFO     | total number of processed events: 400 (read)
[2025-06-04 03:18:37] 2025-06-04 07:18:11,694 | INFO     | executing command: lscpu
[2025-06-04 03:18:37] 2025-06-04 07:18:11,756 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 03:18:37] 2025-06-04 07:18:13,239 | INFO     | monitor loop #223: job 0:6678246961 is in state 'finished'
[2025-06-04 03:18:37] 2025-06-04 07:18:13,240 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:18:37] 2025-06-04 07:18:15,742 | INFO     | monitor loop #224: job 0:6678246961 is in state 'finished'
[2025-06-04 03:18:37] 2025-06-04 07:18:15,743 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:18:37] 2025-06-04 07:18:16,284 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 03:18:37] 2025-06-04 07:18:16,284 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678246961/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 03:18:37] 2025-06-04 07:18:16,284 | INFO     | extracted standard info from prmon json
[2025-06-04 03:18:37] 2025-06-04 07:18:16,284 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 03:18:37] 2025-06-04 07:18:16,284 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 03:18:37] 2025-06-04 07:18:16,285 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 03:18:37] 2025-06-04 07:18:16,285 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 03:18:37] 2025-06-04 07:18:16,286 | INFO     | fitting pss+swap vs Time
[2025-06-04 03:18:37] 2025-06-04 07:18:16,286 | INFO     | sum of square deviations: 24640462.0
[2025-06-04 03:18:37] 2025-06-04 07:18:16,286 | INFO     | sum of deviations: 5945264167.0
[2025-06-04 03:18:37] 2025-06-04 07:18:16,286 | INFO     | mean x: 1749020027.0
[2025-06-04 03:18:37] 2025-06-04 07:18:16,286 | INFO     | mean y: 2409966.11627907
[2025-06-04 03:18:37] 2025-06-04 07:18:16,286 | INFO     | -- intersect: -422002100090.89777
[2025-06-04 03:18:37] 2025-06-04 07:18:16,286 | INFO     | intersect: -422002100090.89777
[2025-06-04 03:18:37] 2025-06-04 07:18:16,286 | INFO     | chi2: 0.6960213038546542
[2025-06-04 03:18:37] 2025-06-04 07:18:16,286 | INFO     | -- intersect: -422002100090.89777
[2025-06-04 03:18:37] 2025-06-04 07:18:16,286 | INFO     | current memory leak: 241.28 B/s (using 43 data points, chi2=0.70)
[2025-06-04 03:18:37] 2025-06-04 07:18:16,287 | INFO     | ..............................
[2025-06-04 03:18:37] 2025-06-04 07:18:16,287 | INFO     | . Timing measurements:
[2025-06-04 03:18:37] 2025-06-04 07:18:16,287 | INFO     | . get job = 0 s
[2025-06-04 03:18:37] 2025-06-04 07:18:16,287 | INFO     | . initial setup = 2 s
[2025-06-04 03:18:37] 2025-06-04 07:18:16,287 | INFO     | . payload setup = 7 s
[2025-06-04 03:18:37] 2025-06-04 07:18:16,287 | INFO     | . stage-in = 0 s
[2025-06-04 03:18:37] 2025-06-04 07:18:16,287 | INFO     | . payload execution = 3050 s
[2025-06-04 03:18:37] 2025-06-04 07:18:16,287 | INFO     | . stage-out = 0 s
[2025-06-04 03:18:37] 2025-06-04 07:18:16,287 | INFO     | . log creation = 0 s
[2025-06-04 03:18:37] 2025-06-04 07:18:16,287 | INFO     | ..............................
[2025-06-04 03:18:37] 2025-06-04 07:18:16,339 | INFO     | 
[2025-06-04 03:18:37] 2025-06-04 07:18:16,339 | INFO     | job summary report
[2025-06-04 03:18:37] 2025-06-04 07:18:16,339 | INFO     | --------------------------------------------------
[2025-06-04 03:18:37] 2025-06-04 07:18:16,339 | INFO     | PanDA job id: 6678246961
[2025-06-04 03:18:37] 2025-06-04 07:18:16,339 | INFO     | task id: 45006595
[2025-06-04 03:18:37] 2025-06-04 07:18:16,339 | INFO     | errors: (none)
[2025-06-04 03:18:37] 2025-06-04 07:18:16,339 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 03:18:37] 2025-06-04 07:18:16,339 | INFO     | pilot state: finished 
[2025-06-04 03:18:37] 2025-06-04 07:18:16,339 | INFO     | transexitcode: 0
[2025-06-04 03:18:37] 2025-06-04 07:18:16,340 | INFO     | exeerrorcode: 0
[2025-06-04 03:18:37] 2025-06-04 07:18:16,340 | INFO     | exeerrordiag: 
[2025-06-04 03:18:37] 2025-06-04 07:18:16,340 | INFO     | exitcode: 0
[2025-06-04 03:18:37] 2025-06-04 07:18:16,340 | INFO     | exitmsg: OK
[2025-06-04 03:18:37] 2025-06-04 07:18:16,340 | INFO     | cpuconsumptiontime: 19228 s
[2025-06-04 03:18:37] 2025-06-04 07:18:16,340 | INFO     | nevents: 400
[2025-06-04 03:18:37] 2025-06-04 07:18:16,340 | INFO     | neventsw: 0
[2025-06-04 03:18:37] 2025-06-04 07:18:16,340 | INFO     | pid: 842059
[2025-06-04 03:18:37] 2025-06-04 07:18:16,340 | INFO     | pgrp: 842059
[2025-06-04 03:18:37] 2025-06-04 07:18:16,340 | INFO     | corecount: 8
[2025-06-04 03:18:37] 2025-06-04 07:18:16,340 | INFO     | event service: False
[2025-06-04 03:18:37] 2025-06-04 07:18:16,340 | INFO     | sizes: {0: 2405184, 5: 2405390, 11: 2405446, 3061: 2430834, 3062: 2439831, 3067: 2439945}
[2025-06-04 03:18:37] 2025-06-04 07:18:16,340 | INFO     | --------------------------------------------------
[2025-06-04 03:18:37] 2025-06-04 07:18:16,340 | INFO     | 
[2025-06-04 03:18:37] 2025-06-04 07:18:16,340 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-04 03:18:37] 2025-06-04 07:18:16,357 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | job 6678246961 has completed (purged errors)
[2025-06-04 03:18:37] 2025-06-04 07:18:16,358 | INFO     | overall cleanup function is called
[2025-06-04 03:18:37] 2025-06-04 07:18:17,365 | INFO     | --- collectZombieJob: --- 10, [842059]
[2025-06-04 03:18:37] 2025-06-04 07:18:17,366 | INFO     | zombie collector waiting for pid 842059
[2025-06-04 03:18:37] 2025-06-04 07:18:17,366 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 03:18:37] 2025-06-04 07:18:17,366 | INFO     | collected zombie processes
[2025-06-04 03:18:37] 2025-06-04 07:18:17,366 | INFO     | will attempt to kill all subprocesses of pid=842059
[2025-06-04 03:18:37] 2025-06-04 07:18:17,777 | INFO     | process IDs to be killed: [842059] (in reverse order)
[2025-06-04 03:18:37] 2025-06-04 07:18:17,989 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 03:18:37] 2025-06-04 07:18:17,989 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 03:18:37] 2025-06-04 07:18:18,025 | INFO     | did not find any defunct processes belonging to 842059
[2025-06-04 03:18:37] 2025-06-04 07:18:18,060 | INFO     | did not find any defunct processes belonging to 842059
[2025-06-04 03:18:37] 2025-06-04 07:18:18,060 | INFO     | ready for new job
[2025-06-04 03:18:37] 2025-06-04 07:18:18,060 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 03:18:37] 2025-06-04 07:18:18,061 | INFO     | **************************************
[2025-06-04 03:18:37] 2025-06-04 07:18:18,061 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 03:18:37] 2025-06-04 07:18:18,062 | INFO     | **************************************
[2025-06-04 03:18:37] 2025-06-04 07:18:18,062 | INFO     | 
[2025-06-04 03:18:37] 2025-06-04 07:18:18,078 | INFO     | architecture information:
[2025-06-04 03:18:37] 2025-06-04 07:18:18,078 | INFO     | executing command: cat /etc/os-release
[2025-06-04 03:18:37] 2025-06-04 07:18:18,094 | INFO     | cat /etc/os-release:
[2025-06-04 03:18:37] NAME="CentOS Linux"
[2025-06-04 03:18:37] VERSION="7 (Core)"
[2025-06-04 03:18:37] ID="centos"
[2025-06-04 03:18:37] ID_LIKE="rhel fedora"
[2025-06-04 03:18:37] VERSION_ID="7"
[2025-06-04 03:18:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 03:18:37] ANSI_COLOR="0;31"
[2025-06-04 03:18:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 03:18:37] HOME_URL="https://www.centos.org/"
[2025-06-04 03:18:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 03:18:37] 
[2025-06-04 03:18:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 03:18:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 03:18:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 03:18:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 03:18:37] 
[2025-06-04 03:18:37] 2025-06-04 07:18:18,094 | INFO     | **************************************
[2025-06-04 03:18:37] 2025-06-04 07:18:18,596 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-04 03:18:37] 2025-06-04 07:18:18,612 | INFO     | sufficient remaining disk space (171926618112 B)
[2025-06-04 03:18:37] 2025-06-04 07:18:18,612 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 03:18:37] 2025-06-04 07:18:18,612 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 03:18:37] 2025-06-04 07:18:18,612 | INFO     | update_server=False
[2025-06-04 03:18:37] 2025-06-04 07:18:18,612 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 03:18:37] 2025-06-04 07:18:18,613 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 03:18:37] 2025-06-04 07:18:18,613 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 03:18:37] 2025-06-04 07:18:18,613 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 03:18:37] 2025-06-04 07:18:18,613 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 03:18:37] 2025-06-04 07:18:18,837 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 03:18:37] 2025-06-04 07:18:19,250 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:18:37] 2025-06-04 07:18:19,251 | INFO     | aborting loop
[2025-06-04 03:18:37] 2025-06-04 07:18:19,256 | INFO     | all data control threads have been joined
[2025-06-04 03:18:37] 2025-06-04 07:18:19,555 | INFO     | all payload control threads have been joined
[2025-06-04 03:18:37] 2025-06-04 07:18:19,618 | INFO     | [job] retrieve thread has finished
[2025-06-04 03:18:37] 2025-06-04 07:18:20,184 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 03:18:37] 2025-06-04 07:18:20,204 | INFO     | [job] validate thread has finished
[2025-06-04 03:18:37] 2025-06-04 07:18:20,255 | INFO     | [job] job monitor thread has finished
[2025-06-04 03:18:37] 2025-06-04 07:18:20,262 | INFO     | [data] control thread has finished
[2025-06-04 03:18:37] 2025-06-04 07:18:20,262 | INFO     | all job control threads have been joined
[2025-06-04 03:18:37] 2025-06-04 07:18:20,441 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 03:18:37] 2025-06-04 07:18:20,509 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 03:18:37] 2025-06-04 07:18:20,561 | INFO     | [payload] control thread has finished
[2025-06-04 03:18:37] 2025-06-04 07:18:20,838 | INFO     | [payload] validate_post thread has finished
[2025-06-04 03:18:37] 2025-06-04 07:18:20,842 | INFO     | [data] copytool_out thread has finished
[2025-06-04 03:18:37] 2025-06-04 07:18:20,911 | INFO     | [data] copytool_in thread has finished
[2025-06-04 03:18:37] 2025-06-04 07:18:21,212 | INFO     | [payload] failed_post thread has finished
[2025-06-04 03:18:37] 2025-06-04 07:18:21,268 | INFO     | [job] control thread has finished
[2025-06-04 03:18:37] 2025-06-04 07:18:21,348 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:18:37] 2025-06-04 07:18:21,432 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 03:18:37] 2025-06-04 07:18:22,353 | INFO     | [job] queue monitor thread has finished
[2025-06-04 03:18:37] 2025-06-04 07:18:25,437 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 03:18:37] 2025-06-04 07:18:29,384 | INFO     | job.realtimelogging is not enabled
[2025-06-04 03:18:37] 2025-06-04 07:18:30,388 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 03:18:37] 2025-06-04 07:18:32,492 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139819632346944)>', '<ExcThread(monitor, started 139819120301824)>']
[2025-06-04 03:18:37] 2025-06-04 07:18:32,683 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 03:18:37] 2025-06-04 07:18:32,684 | INFO     | [monitor] control thread has ended
[2025-06-04 03:18:37] 2025-06-04 07:18:37,517 | INFO     | all workflow threads have been joined
[2025-06-04 03:18:37] 2025-06-04 07:18:37,518 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 03:18:37] 2025-06-04 07:18:37,518 | INFO     | traces error code: 0
[2025-06-04 03:18:37] 2025-06-04 07:18:37,518 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 03:18:37] 2025-06-04 07:18:37,659 [wrapper] ==== pilot stdout END ====
[2025-06-04 03:18:37] 2025-06-04 07:18:37,662 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 03:18:37] 2025-06-04 07:18:37,664 [wrapper] pilotpid: 823964
[2025-06-04 03:18:37] 2025-06-04 07:18:37,666 [wrapper] Pilot exit status: 0
[2025-06-04 03:18:37] 2025-06-04 07:18:37,673 [wrapper] pandaids: 6678246961
[2025-06-04 03:18:37] 2025-06-04 07:18:37,826 [wrapper] cleanup supervisor_pilot 1989186 823966
[2025-06-04 03:18:37] 2025-06-04 07:18:37,828 [wrapper] Test setup, not cleaning
[2025-06-04 03:18:37] 2025-06-04 07:18:37,831 [wrapper] apfmon messages muted
[2025-06-04 03:18:37] 2025-06-04 07:18:37,833 [wrapper] ==== wrapper stdout END ====
[2025-06-04 03:18:37] 2025-06-04 07:18:37,835 [wrapper] ==== wrapper stderr END ====
[2025-06-04 03:18:37]  *** Error codes and diagnostics ***
[2025-06-04 03:18:37]     "exeErrorCode": 0,
[2025-06-04 03:18:37]     "exeErrorDiag": "",
[2025-06-04 03:18:37]     "pilotErrorCode": 0,
[2025-06-04 03:18:37]     "pilotErrorDiag": "",
[2025-06-04 03:18:37]  *** Listing of results directory ***
[2025-06-04 03:18:37] total 388768
[2025-06-04 03:18:37] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 21:59 pilot3.tar.gz
[2025-06-04 03:18:37] -rwx------. 1 boincer umatlas     37140 Jun  3 22:11 runpilot2-wrapper.sh
[2025-06-04 03:18:37] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 22:11 queuedata.json
[2025-06-04 03:18:37] -rw-r--r--. 1 boincer umatlas       100 Jun  4 02:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 03:18:37] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 02:26 run_atlas
[2025-06-04 03:18:37] -rw-r--r--. 1 boincer umatlas       105 Jun  4 02:26 job.xml
[2025-06-04 03:18:37] -rw-r--r--. 2 boincer umatlas 215327740 Jun  4 02:26 EVNT.45006593._002016.pool.root.1
[2025-06-04 03:18:37] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 02:26 shared
[2025-06-04 03:18:37] -rw-r--r--. 2 boincer umatlas    508883 Jun  4 02:26 input.tar.gz
[2025-06-04 03:18:37] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 02:26 start_atlas.sh
[2025-06-04 03:18:37] -rw-r--r--. 1 boincer umatlas         0 Jun  4 02:26 boinc_lockfile
[2025-06-04 03:18:37] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 02:26 pandaJob.out
[2025-06-04 03:18:37] -rw-------. 1 boincer umatlas    986745 Jun  4 02:26 agis_schedconf.cvmfs.json
[2025-06-04 03:18:37] -rw-------. 1 boincer umatlas   1603667 Jun  4 02:26 agis_ddmendpoints.agis.ALL.json
[2025-06-04 03:18:37] drwx------. 4 boincer umatlas      4096 Jun  4 02:26 pilot3
[2025-06-04 03:18:37] -rw-r--r--. 1 boincer umatlas      7159 Jun  4 03:09 init_data.xml
[2025-06-04 03:18:37] -rw-------. 1 boincer umatlas        95 Jun  4 03:17 pilot_heartbeat.json
[2025-06-04 03:18:37] -rw-------. 1 boincer umatlas 177698343 Jun  4 03:17 HITS.45006595._050289.pool.root.1
[2025-06-04 03:18:37] -rw-r--r--. 1 boincer umatlas       530 Jun  4 03:17 boinc_task_state.xml
[2025-06-04 03:18:37] -rw-------. 1 boincer umatlas      1053 Jun  4 03:18 memory_monitor_summary.json
[2025-06-04 03:18:37] -rw-------. 1 boincer umatlas    295722 Jun  4 03:18 log.45006595._050289.job.log.tgz.1
[2025-06-04 03:18:37] -rw-------. 1 boincer umatlas      7692 Jun  4 03:18 heartbeat.json
[2025-06-04 03:18:37] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 03:18 boinc_mmap_file
[2025-06-04 03:18:37] -rw-r--r--. 1 boincer umatlas        27 Jun  4 03:18 wrapper_checkpoint.txt
[2025-06-04 03:18:37] -rw-------. 1 boincer umatlas      4549 Jun  4 03:18 pilotlog.txt
[2025-06-04 03:18:37] -rw-------. 1 boincer umatlas    319878 Jun  4 03:18 log.45006595._050289.job.log.1
[2025-06-04 03:18:37] -rw-------. 1 boincer umatlas       357 Jun  4 03:18 output.list
[2025-06-04 03:18:37] -rw-r--r--. 1 boincer umatlas       620 Jun  4 03:18 runtime_log
[2025-06-04 03:18:37] -rw-------. 1 boincer umatlas    634880 Jun  4 03:18 result.tar.gz
[2025-06-04 03:18:37] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 03:18 runtime_log.err
[2025-06-04 03:18:37] -rw-------. 1 boincer umatlas       651 Jun  4 03:18 Ls5MDmVmsg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm6WaKDmhXP6Xo.diag
[2025-06-04 03:18:37] -rw-r--r--. 1 boincer umatlas     21326 Jun  4 03:18 stderr.txt
[2025-06-04 03:18:37] HITS file was successfully produced:
[2025-06-04 03:18:37] -rw-------. 1 boincer umatlas 177698343 Jun  4 03:17 shared/HITS.pool.root.1
[2025-06-04 03:18:37]  *** Contents of shared directory: ***
[2025-06-04 03:18:37] total 384964
[2025-06-04 03:18:37] -rw-r--r--. 2 boincer umatlas 215327740 Jun  4 02:26 ATLAS.root_0
[2025-06-04 03:18:37] -rw-r--r--. 2 boincer umatlas    508883 Jun  4 02:26 input.tar.gz
[2025-06-04 03:18:37] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 02:26 start_atlas.sh
[2025-06-04 03:18:37] -rw-------. 1 boincer umatlas 177698343 Jun  4 03:17 HITS.pool.root.1
[2025-06-04 03:18:37] -rw-------. 1 boincer umatlas    634880 Jun  4 03:18 result.tar.gz
03:18:39 (811099): run_atlas exited; CPU time 19225.909050
03:18:39 (811099): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN