Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:59:37 (18203): wrapper (7.7.26015): starting
16:59:37 (18203): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 16:59:37] Arguments: --nthreads 8
[2025-06-04 16:59:37] Threads: 8
[2025-06-04 16:59:37] Checking for CVMFS
[2025-06-04 16:59:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 16:59:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 16:59:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 16:59:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 16:59:38] 2.11.2.0 30898 33348 90220 146783 0 207 15270465 25165824 3321 130560 0 16909716 99.795 19754792 2339 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 16:59:38] CVMFS is ok
[2025-06-04 16:59:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 16:59:38] Checking for apptainer binary...
[2025-06-04 16:59:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 16:59:38] Running /usr/bin/apptainer --version
[2025-06-04 16:59:38] apptainer version 1.3.2-1.el7
[2025-06-04 16:59:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 16:59:40] cg-vwn285.simple-grid.lan
[2025-06-04 16:59:40] apptainer works
[2025-06-04 16:59:40] Set ATHENA_PROC_NUMBER=8
[2025-06-04 16:59:40] Set ATHENA_CORE_NUMBER=8
[2025-06-04 16:59:40] Starting ATLAS job with PandaID=6678312623
[2025-06-04 16:59:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 22:29:32]  *** The last 200 lines of the pilot log: ***
[2025-06-04 22:29:33] 2025-06-04 18:41:31,458 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-6678312623/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 22:29:33] 2025-06-04 18:41:31,459 | INFO     | extracted standard info from prmon json
[2025-06-04 22:29:33] 2025-06-04 18:41:31,459 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 22:29:33] 2025-06-04 18:41:31,459 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 22:29:33] 2025-06-04 18:41:31,459 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 22:29:33] 2025-06-04 18:41:31,459 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 22:29:33] 2025-06-04 18:41:31,465 | INFO     | fitting pss+swap vs Time
[2025-06-04 22:29:33] 2025-06-04 18:41:31,465 | INFO     | sum of square deviations: 3081657780.0
[2025-06-04 22:29:33] 2025-06-04 18:41:31,467 | INFO     | sum of deviations: 5315839570.999989
[2025-06-04 22:29:33] 2025-06-04 18:41:31,467 | INFO     | mean x: 1749055813.0
[2025-06-04 22:29:33] 2025-06-04 18:41:31,468 | INFO     | mean y: 2464767.5953488373
[2025-06-04 22:29:33] 2025-06-04 18:41:31,468 | INFO     | -- intersect: -3014645101.960951
[2025-06-04 22:29:33] 2025-06-04 18:41:31,468 | INFO     | intersect: -3014645101.960951
[2025-06-04 22:29:33] 2025-06-04 18:41:31,468 | INFO     | chi2: 2.68597803832617
[2025-06-04 22:29:33] 2025-06-04 18:41:31,469 | INFO     | sum of square deviations: 2871616632.5
[2025-06-04 22:29:33] 2025-06-04 18:41:31,470 | INFO     | sum of deviations: 19774406234.000004
[2025-06-04 22:29:33] 2025-06-04 18:41:31,471 | INFO     | mean x: 1749055660.5
[2025-06-04 22:29:33] 2025-06-04 18:41:31,471 | INFO     | mean y: 2475062.5142857144
[2025-06-04 22:29:33] 2025-06-04 18:41:31,471 | INFO     | -- intersect: -12041798802.30642
[2025-06-04 22:29:33] 2025-06-04 18:41:31,471 | INFO     | intersect: -12041798802.30642
[2025-06-04 22:29:33] 2025-06-04 18:41:31,471 | INFO     | chi2: 1.8433694485914198
[2025-06-04 22:29:33] 2025-06-04 18:41:31,471 | INFO     | current chi2=1.8433694485914198 (change=31.37064330800864 %)
[2025-06-04 22:29:33] 2025-06-04 18:41:31,472 | INFO     | sum of square deviations: 2671343110.0
[2025-06-04 22:29:33] 2025-06-04 18:41:31,473 | INFO     | sum of deviations: 19176936793.000004
[2025-06-04 22:29:33] 2025-06-04 18:41:31,474 | INFO     | mean x: 1749055508.0
[2025-06-04 22:29:33] 2025-06-04 18:41:31,474 | INFO     | mean y: 2474607.487804878
[2025-06-04 22:29:33] 2025-06-04 18:41:31,474 | INFO     | -- intersect: -12553578861.946346
[2025-06-04 22:29:33] 2025-06-04 18:41:31,474 | INFO     | intersect: -12553578861.946346
[2025-06-04 22:29:33] 2025-06-04 18:41:31,474 | INFO     | chi2: 1.8445856580599607
[2025-06-04 22:29:33] 2025-06-04 18:41:31,474 | INFO     | current chi2=1.8445856580599607 (change=-0.06597752118926498 %)
[2025-06-04 22:29:33] 2025-06-04 18:41:31,475 | INFO     | right removable region: 204
[2025-06-04 22:29:33] 2025-06-04 18:41:31,475 | INFO     | sum of square deviations: 2871616632.5
[2025-06-04 22:29:33] 2025-06-04 18:41:31,484 | INFO     | sum of deviations: -32804554380.0
[2025-06-04 22:29:33] 2025-06-04 18:41:31,484 | INFO     | mean x: 1749055965.5
[2025-06-04 22:29:33] 2025-06-04 18:41:31,484 | INFO     | mean y: 2492207.0857142857
[2025-06-04 22:29:33] 2025-06-04 18:41:31,484 | INFO     | -- intersect: 19983223926.123127
[2025-06-04 22:29:33] 2025-06-04 18:41:31,485 | INFO     | intersect: 19983223926.123127
[2025-06-04 22:29:33] 2025-06-04 18:41:31,485 | INFO     | chi2: 1.0047106213639867
[2025-06-04 22:29:33] 2025-06-04 18:41:31,485 | INFO     | current chi2=1.0047106213639867 (change=62.59423543201807 %)
[2025-06-04 22:29:33] 2025-06-04 18:41:31,485 | INFO     | sum of square deviations: 2671343110.0
[2025-06-04 22:29:33] 2025-06-04 18:41:31,487 | INFO     | sum of deviations: -29707447069.0
[2025-06-04 22:29:33] 2025-06-04 18:41:31,487 | INFO     | mean x: 1749056118.0
[2025-06-04 22:29:33] 2025-06-04 18:41:31,487 | INFO     | mean y: 2489807.712195122
[2025-06-04 22:29:33] 2025-06-04 18:41:31,487 | INFO     | -- intersect: 19453376461.578094
[2025-06-04 22:29:33] 2025-06-04 18:41:31,487 | INFO     | intersect: 19453376461.578094
[2025-06-04 22:29:33] 2025-06-04 18:41:31,488 | INFO     | chi2: 0.9885664667965264
[2025-06-04 22:29:33] 2025-06-04 18:41:31,488 | INFO     | current chi2=0.9885664667965264 (change=1.6068462126480911 %)
[2025-06-04 22:29:33] 2025-06-04 18:41:31,488 | INFO     | left removable region: 20
[2025-06-04 22:29:33] 2025-06-04 18:41:31,488 | INFO     | sum of square deviations: 1931608310.0
[2025-06-04 22:29:33] 2025-06-04 18:41:31,490 | INFO     | sum of deviations: -615662325.0
[2025-06-04 22:29:33] 2025-06-04 18:41:31,490 | INFO     | mean x: 1749056087.5
[2025-06-04 22:29:33] 2025-06-04 18:41:31,490 | INFO     | mean y: 2488388.5
[2025-06-04 22:29:33] 2025-06-04 18:41:31,490 | INFO     | -- intersect: 559965767.2267737
[2025-06-04 22:29:33] 2025-06-04 18:41:31,490 | INFO     | intersect: 559965767.2267737
[2025-06-04 22:29:33] 2025-06-04 18:41:31,491 | INFO     | chi2: 0.03711723320034781
[2025-06-04 22:29:33] 2025-06-04 18:41:31,491 | INFO     | -- intersect: 559965767.2267737
[2025-06-04 22:29:33] 2025-06-04 18:41:31,491 | INFO     | current memory leak: -0.32 B/s (using 184 data points, chi2=0.04)
[2025-06-04 22:29:33] 2025-06-04 18:41:31,492 | INFO     | ..............................
[2025-06-04 22:29:33] 2025-06-04 18:41:31,492 | INFO     | . Timing measurements:
[2025-06-04 22:29:33] 2025-06-04 18:41:31,492 | INFO     | . get job = 0 s
[2025-06-04 22:29:33] 2025-06-04 18:41:31,492 | INFO     | . initial setup = 2 s
[2025-06-04 22:29:33] 2025-06-04 18:41:31,492 | INFO     | . payload setup = 17 s
[2025-06-04 22:29:33] 2025-06-04 18:41:31,492 | INFO     | . stage-in = 0 s
[2025-06-04 22:29:33] 2025-06-04 18:41:31,492 | INFO     | . payload execution = 13148 s
[2025-06-04 22:29:33] 2025-06-04 18:41:31,493 | INFO     | . stage-out = 4 s
[2025-06-04 22:29:33] 2025-06-04 18:41:31,493 | INFO     | . log creation = 1 s
[2025-06-04 22:29:33] 2025-06-04 18:41:31,493 | INFO     | ..............................
[2025-06-04 22:29:33] 2025-06-04 18:41:31,875 | INFO     | 
[2025-06-04 22:29:33] 2025-06-04 18:41:31,876 | INFO     | job summary report
[2025-06-04 22:29:33] 2025-06-04 18:41:31,876 | INFO     | --------------------------------------------------
[2025-06-04 22:29:33] 2025-06-04 18:41:31,876 | INFO     | PanDA job id: 6678312623
[2025-06-04 22:29:33] 2025-06-04 18:41:31,876 | INFO     | task id: 45006595
[2025-06-04 22:29:33] 2025-06-04 18:41:31,876 | INFO     | errors: (none)
[2025-06-04 22:29:33] 2025-06-04 18:41:31,876 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 22:29:33] 2025-06-04 18:41:31,876 | INFO     | pilot state: finished 
[2025-06-04 22:29:33] 2025-06-04 18:41:31,876 | INFO     | transexitcode: 0
[2025-06-04 22:29:33] 2025-06-04 18:41:31,876 | INFO     | exeerrorcode: 0
[2025-06-04 22:29:33] 2025-06-04 18:41:31,876 | INFO     | exeerrordiag: 
[2025-06-04 22:29:33] 2025-06-04 18:41:31,876 | INFO     | exitcode: 0
[2025-06-04 22:29:33] 2025-06-04 18:41:31,877 | INFO     | exitmsg: OK
[2025-06-04 22:29:33] 2025-06-04 18:41:31,877 | INFO     | cpuconsumptiontime: 48693 s
[2025-06-04 22:29:33] 2025-06-04 18:41:31,877 | INFO     | nevents: 400
[2025-06-04 22:29:33] 2025-06-04 18:41:31,877 | INFO     | neventsw: 0
[2025-06-04 22:29:33] 2025-06-04 18:41:31,877 | INFO     | pid: 30573
[2025-06-04 22:29:33] 2025-06-04 18:41:31,877 | INFO     | pgrp: 30573
[2025-06-04 22:29:33] 2025-06-04 18:41:31,877 | INFO     | corecount: 8
[2025-06-04 22:29:33] 2025-06-04 18:41:31,877 | INFO     | event service: False
[2025-06-04 22:29:33] 2025-06-04 18:41:31,877 | INFO     | sizes: {0: 2397116, 1: 2397371, 2: 2397371, 11: 2397605, 12: 2397633, 13169: 2427222, 13170: 2427349, 13176: 2436404, 13269: 2436518}
[2025-06-04 22:29:33] 2025-06-04 18:41:31,877 | INFO     | --------------------------------------------------
[2025-06-04 22:29:33] 2025-06-04 18:41:31,877 | INFO     | 
[2025-06-04 22:29:33] 2025-06-04 18:41:31,878 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2025-06-04 22:29:33] 2025-06-04 18:41:32,371 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,371 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,371 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,371 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,371 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,371 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,372 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,372 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,372 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,372 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,372 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,372 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,372 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,372 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,372 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,372 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,372 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,373 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 22:29:33] 2025-06-04 18:41:32,373 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,373 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 22:29:33] 2025-06-04 18:41:32,373 | INFO     | job 6678312623 has completed (purged errors)
[2025-06-04 22:29:33] 2025-06-04 18:41:32,373 | INFO     | overall cleanup function is called
[2025-06-04 22:29:33] 2025-06-04 18:41:33,382 | INFO     | --- collectZombieJob: --- 10, [30573]
[2025-06-04 22:29:33] 2025-06-04 18:41:33,382 | INFO     | zombie collector waiting for pid 30573
[2025-06-04 22:29:33] 2025-06-04 18:41:33,383 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 22:29:33] 2025-06-04 18:41:33,383 | INFO     | collected zombie processes
[2025-06-04 22:29:33] 2025-06-04 18:41:33,383 | INFO     | will attempt to kill all subprocesses of pid=30573
[2025-06-04 22:29:33] 2025-06-04 18:41:33,493 | INFO     | process IDs to be killed: [30573] (in reverse order)
[2025-06-04 22:29:33] 2025-06-04 18:41:34,156 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 22:29:33] 2025-06-04 18:41:34,156 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 22:29:33] 2025-06-04 18:41:34,160 | INFO     | did not find any defunct processes belonging to 30573
[2025-06-04 22:29:33] 2025-06-04 18:41:34,163 | INFO     | did not find any defunct processes belonging to 30573
[2025-06-04 22:29:33] 2025-06-04 18:41:34,166 | INFO     | ready for new job
[2025-06-04 22:29:33] 2025-06-04 18:41:34,167 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 22:29:33] 2025-06-04 18:41:34,169 | INFO     | **************************************
[2025-06-04 22:29:33] 2025-06-04 18:41:34,169 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 22:29:33] 2025-06-04 18:41:34,169 | INFO     | **************************************
[2025-06-04 22:29:33] 2025-06-04 18:41:34,169 | INFO     | 
[2025-06-04 22:29:33] 2025-06-04 18:41:34,170 | INFO     | pilot is running in a VM
[2025-06-04 22:29:33] 2025-06-04 18:41:34,170 | INFO     | architecture information:
[2025-06-04 22:29:33] 2025-06-04 18:41:34,184 | INFO     | executing command: cat /etc/os-release
[2025-06-04 22:29:33] 2025-06-04 18:41:34,372 | INFO     | cat /etc/os-release:
[2025-06-04 22:29:33] NAME="CentOS Linux"
[2025-06-04 22:29:33] VERSION="7 (Core)"
[2025-06-04 22:29:33] ID="centos"
[2025-06-04 22:29:33] ID_LIKE="rhel fedora"
[2025-06-04 22:29:33] VERSION_ID="7"
[2025-06-04 22:29:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 22:29:33] ANSI_COLOR="0;31"
[2025-06-04 22:29:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 22:29:33] HOME_URL="https://www.centos.org/"
[2025-06-04 22:29:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 22:29:33] 
[2025-06-04 22:29:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 22:29:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 22:29:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 22:29:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 22:29:33] 
[2025-06-04 22:29:33] 2025-06-04 18:41:34,372 | INFO     | **************************************
[2025-06-04 22:29:33] 2025-06-04 18:41:34,875 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2025-06-04 22:29:33] 2025-06-04 18:41:35,170 | INFO     | sufficient remaining disk space (496977838080 B)
[2025-06-04 22:29:33] 2025-06-04 18:41:35,170 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 22:29:33] 2025-06-04 18:41:35,171 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 22:29:33] 2025-06-04 18:41:35,171 | INFO     | update_server=False
[2025-06-04 22:29:33] 2025-06-04 18:41:35,171 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 22:29:33] 2025-06-04 18:41:35,171 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 22:29:33] 2025-06-04 18:41:35,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 22:29:33] 2025-06-04 18:41:35,455 | INFO     | all payload control threads have been joined
[2025-06-04 22:29:33] 2025-06-04 18:41:35,518 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:29:33] 2025-06-04 18:41:35,519 | INFO     | aborting loop
[2025-06-04 22:29:33] 2025-06-04 18:41:35,615 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 22:29:33] 2025-06-04 18:41:35,616 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 22:29:33] 2025-06-04 18:41:35,616 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 22:29:33] 2025-06-04 18:41:36,133 | INFO     | all data control threads have been joined
[2025-06-04 22:29:33] 2025-06-04 18:41:36,175 | INFO     | [job] retrieve thread has finished
[2025-06-04 22:29:33] 2025-06-04 18:41:36,207 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 22:29:33] 2025-06-04 18:41:36,461 | INFO     | [payload] control thread has finished
[2025-06-04 22:29:33] 2025-06-04 18:41:36,516 | INFO     | [payload] validate_post thread has finished
[2025-06-04 22:29:33] 2025-06-04 18:41:36,524 | INFO     | [job] job monitor thread has finished
[2025-06-04 22:29:33] 2025-06-04 18:41:36,649 | INFO     | all job control threads have been joined
[2025-06-04 22:29:33] 2025-06-04 18:41:36,658 | INFO     | [payload] failed_post thread has finished
[2025-06-04 22:29:33] 2025-06-04 18:41:36,686 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:29:33] 2025-06-04 18:41:36,904 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 22:29:33] 2025-06-04 18:41:36,943 | INFO     | [data] copytool_in thread has finished
[2025-06-04 22:29:33] 2025-06-04 18:41:37,054 | INFO     | [job] validate thread has finished
[2025-06-04 22:29:33] 2025-06-04 18:41:37,075 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 22:29:33] 2025-06-04 18:41:37,139 | INFO     | [data] control thread has finished
[2025-06-04 22:29:33] 2025-06-04 18:41:37,179 | INFO     | [data] copytool_out thread has finished
[2025-06-04 22:29:33] 2025-06-04 18:41:37,326 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 22:29:33] 2025-06-04 18:41:37,654 | INFO     | [job] control thread has finished
[2025-06-04 22:29:33] 2025-06-04 18:41:37,692 | INFO     | [job] queue monitor thread has finished
[2025-06-04 22:29:33] 2025-06-04 18:41:39,204 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 22:29:33] 2025-06-04 18:41:40,750 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140440190134080)>', '<ExcThread(monitor, started 140439449495296)>']
[2025-06-04 22:29:33] 2025-06-04 18:41:41,651 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 22:29:33] 2025-06-04 18:41:41,652 | INFO     | [monitor] control thread has ended
[2025-06-04 22:29:33] 2025-06-04 18:41:45,776 | INFO     | all workflow threads have been joined
[2025-06-04 22:29:33] 2025-06-04 18:41:45,777 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 22:29:33] 2025-06-04 18:41:45,777 | INFO     | traces error code: 0
[2025-06-04 22:29:33] 2025-06-04 18:41:45,777 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 22:29:33] 2025-06-04 18:41:46,102 [wrapper] ==== pilot stdout END ====
[2025-06-04 22:29:33] 2025-06-04 18:41:46,153 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 22:29:33] 2025-06-04 18:41:46,175 [wrapper] pilotpid: 21838
[2025-06-04 22:29:33] 2025-06-04 18:41:46,225 [wrapper] Pilot exit status: 0
[2025-06-04 22:29:33] 2025-06-04 18:41:46,457 [wrapper] pandaids: 6678312623
[2025-06-04 22:29:33] 2025-06-04 18:41:47,333 [wrapper] cleanup supervisor_pilot 19835 21839
[2025-06-04 22:29:33] 2025-06-04 18:41:47,415 [wrapper] Test setup, not cleaning
[2025-06-04 22:29:33] 2025-06-04 18:41:47,516 [wrapper] apfmon messages muted
[2025-06-04 22:29:33] 2025-06-04 18:41:47,594 [wrapper] ==== wrapper stdout END ====
[2025-06-04 22:29:33] 2025-06-04 18:41:47,710 [wrapper] ==== wrapper stderr END ====
[2025-06-04 22:29:33]  *** Error codes and diagnostics ***
[2025-06-04 22:29:33]     "exeErrorCode": 0,
[2025-06-04 22:29:33]     "exeErrorDiag": "",
[2025-06-04 22:29:33]     "pilotErrorCode": 0,
[2025-06-04 22:29:33]     "pilotErrorDiag": "",
[2025-06-04 22:29:33]  *** Listing of results directory ***
[2025-06-04 22:29:33] total 389752
[2025-06-04 22:29:33] -rw-r--r--. 1 boinc boinc    495897 Jun  4 06:04 pilot3.tar.gz
[2025-06-04 22:29:33] -rw-r--r--. 1 boinc boinc      5111 Jun  4 06:12 queuedata.json
[2025-06-04 22:29:33] -rwx------. 1 boinc boinc     37140 Jun  4 06:13 runpilot2-wrapper.sh
[2025-06-04 22:29:33] -rw-r--r--. 1 boinc boinc       100 Jun  4 16:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 22:29:33] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 16:59 run_atlas
[2025-06-04 22:29:33] -rw-r--r--. 1 boinc boinc       105 Jun  4 16:59 job.xml
[2025-06-04 22:29:33] -rw-r--r--. 1 boinc boinc      6392 Jun  4 16:59 init_data.xml
[2025-06-04 22:29:33] -rw-r--r--. 2 boinc boinc 215114588 Jun  4 16:59 EVNT.45006593._002085.pool.root.1
[2025-06-04 22:29:33] -rw-r--r--. 2 boinc boinc     15093 Jun  4 16:59 start_atlas.sh
[2025-06-04 22:29:33] drwxrwx--x. 2 boinc boinc        68 Jun  4 16:59 shared
[2025-06-04 22:29:33] -rw-r--r--. 2 boinc boinc    508880 Jun  4 16:59 input.tar.gz
[2025-06-04 22:29:33] -rw-r--r--. 1 boinc boinc         0 Jun  4 16:59 boinc_lockfile
[2025-06-04 22:29:33] -rw-r--r--. 1 boinc boinc      2525 Jun  4 16:59 pandaJob.out
[2025-06-04 22:29:33] -rw-------. 1 boinc boinc    987207 Jun  4 16:59 agis_schedconf.cvmfs.json
[2025-06-04 22:29:33] drwx------. 4 boinc boinc      4096 Jun  4 17:00 pilot3
[2025-06-04 22:29:33] -rw-------. 1 boinc boinc 177074482 Jun  4 20:38 HITS.45006595._052069.pool.root.1
[2025-06-04 22:29:33] -rw-r--r--. 1 boinc boinc       531 Jun  4 20:38 boinc_task_state.xml
[2025-06-04 22:29:33] -rw-------. 1 boinc boinc      1019 Jun  4 20:39 memory_monitor_summary.json
[2025-06-04 22:29:33] -rw-------. 1 boinc boinc   1598969 Jun  4 20:39 agis_ddmendpoints.agis.ALL.json
[2025-06-04 22:29:33] -rw-------. 1 boinc boinc    385651 Jun  4 20:39 log.45006595._052069.job.log.tgz.1
[2025-06-04 22:29:33] -rw-------. 1 boinc boinc        95 Jun  4 20:41 pilot_heartbeat.json
[2025-06-04 22:29:33] -rw-------. 1 boinc boinc      7685 Jun  4 20:41 heartbeat.json
[2025-06-04 22:29:33] -rw-------. 1 boinc boinc      4417 Jun  4 20:41 pilotlog.txt
[2025-06-04 22:29:33] -rw-------. 1 boinc boinc   1157526 Jun  4 20:41 log.45006595._052069.job.log.1
[2025-06-04 22:29:33] -rw-------. 1 boinc boinc       357 Jun  4 20:41 output.list
[2025-06-04 22:29:33] -rw-r--r--. 1 boinc boinc       620 Jun  4 20:41 runtime_log
[2025-06-04 22:29:33] -rw-------. 1 boinc boinc   1566720 Jun  4 20:41 result.tar.gz
[2025-06-04 22:29:33] -rw-------. 1 boinc boinc       656 Jun  4 20:41 xbpLDm7fug7n9Rq4apOajLDm4fhM0noT9bVof3QYDmzfaKDm2cg5hm.diag
[2025-06-04 22:29:33] -rw-r--r--. 1 boinc boinc      8673 Jun  4 20:41 runtime_log.err
[2025-06-04 22:29:33] -rw-r--r--. 1 boinc boinc      8192 Jun  4 22:29 boinc_mmap_file
[2025-06-04 22:29:33] -rw-r--r--. 1 boinc boinc        28 Jun  4 22:29 wrapper_checkpoint.txt
[2025-06-04 22:29:33] -rw-r--r--. 1 boinc boinc     20495 Jun  4 22:29 stderr.txt
[2025-06-04 22:29:33] HITS file was successfully produced:
[2025-06-04 22:29:33] -rw-------. 1 boinc boinc 177074482 Jun  4 20:38 shared/HITS.pool.root.1
[2025-06-04 22:29:33]  *** Contents of shared directory: ***
[2025-06-04 22:29:33] total 385052
[2025-06-04 22:29:33] -rw-r--r--. 2 boinc boinc 215114588 Jun  4 16:59 ATLAS.root_0
[2025-06-04 22:29:33] -rw-r--r--. 2 boinc boinc     15093 Jun  4 16:59 start_atlas.sh
[2025-06-04 22:29:33] -rw-r--r--. 2 boinc boinc    508880 Jun  4 16:59 input.tar.gz
[2025-06-04 22:29:33] -rw-------. 1 boinc boinc 177074482 Jun  4 20:38 HITS.pool.root.1
[2025-06-04 22:29:33] -rw-------. 1 boinc boinc   1566720 Jun  4 20:41 result.tar.gz
22:29:34 (18203): run_atlas exited; CPU time 48872.804522
22:29:34 (18203): called boinc_finish(0)

</stderr_txt>
]]>

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