Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:18:39 (2902882): wrapper (7.7.26015): starting
02:18:39 (2902882): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 02:18:39] Arguments: --nthreads 8
[2025-06-04 02:18:39] Threads: 8
[2025-06-04 02:18:39] Checking for CVMFS
[2025-06-04 02:18:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 02:18:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 02:18:39] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 02:18:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 02:18:39] 2.12.6.0 3451353 22874 456176 146771 3 66 31760758 32935937 9168 16776704 0 132706063 99.721 100489526 26138 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 02:18:39] CVMFS is ok
[2025-06-04 02:18:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 02:18:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 02:18:39] Further information can be found at the LHC@home message board.
[2025-06-04 02:18:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 02:18:39] Checking for apptainer binary...
[2025-06-04 02:18:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 02:18:39] Running /usr/bin/apptainer --version
[2025-06-04 02:18:39] apptainer version 1.4.1-1.el9
[2025-06-04 02:18:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 02:18:39] c6-12-27-2.aglt2.org
[2025-06-04 02:18:39] apptainer works
[2025-06-04 02:18:39] Set ATHENA_PROC_NUMBER=8
[2025-06-04 02:18:39] Set ATHENA_CORE_NUMBER=8
[2025-06-04 02:18:39] Starting ATLAS job with PandaID=6678150865
[2025-06-04 02:18:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 03:11:06]  *** The last 200 lines of the pilot log: ***
[2025-06-04 03:11:06]  is_tar=False
[2025-06-04 03:11:06]  lfn=log.45006595._046766.job.log.tgz.1
[2025-06-04 03:11:06]  mtime=0
[2025-06-04 03:11:06]  protocol_id=None
[2025-06-04 03:11:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 03:11:06]  replicas=None
[2025-06-04 03:11:06]  scope=mc23_13p6TeV
[2025-06-04 03:11:06]  status=None
[2025-06-04 03:11:06]  status_code=0
[2025-06-04 03:11:06]  storage_token=
[2025-06-04 03:11:06]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678150865/log.45006595._046766.job.log.tgz.1
[2025-06-04 03:11:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d4/29/log.45006595._046766.job.log.tgz.1
[2025-06-04 03:11:06]  workdir=None
[2025-06-04 03:11:06] ]
[2025-06-04 03:11:06] 2025-06-04 07:10:41,938 | INFO     | transferring file log.45006595._046766.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678150865/log.45006595._046766.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 03:11:06] 2025-06-04 07:10:41,938 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678150865/log.45006595._046766.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._046766.job
[2025-06-04 03:11:06] 2025-06-04 07:10:41,952 | INFO     | adding to output.list: log.45006595._046766.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d4/29/log.45006595._046766.job.log.tg
[2025-06-04 03:11:06] 2025-06-04 07:10:41,953 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 03:11:06] 2025-06-04 07:10:41,953 | INFO     | summary of transferred files:
[2025-06-04 03:11:06] 2025-06-04 07:10:41,953 | INFO     |  -- lfn=log.45006595._046766.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 03:11:06] 2025-06-04 07:10:41,954 | INFO     | stage-out finished correctly
[2025-06-04 03:11:06] 2025-06-04 07:10:42,229 | INFO     | PID=2906487 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 03:11:06] 2025-06-04 07:10:42,229 | INFO     | .. there are 15 such processes running
[2025-06-04 03:11:06] 2025-06-04 07:10:44,237 | INFO     | monitor loop #236: job 0:6678150865 is in state 'finished'
[2025-06-04 03:11:06] 2025-06-04 07:10:44,237 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:11:06] 2025-06-04 07:10:44,274 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 03:11:06] 2025-06-04 07:10:44,467 | INFO     | job 6678150865 has state=finished
[2025-06-04 03:11:06] 2025-06-04 07:10:44,468 | INFO     | preparing for final server update for job 6678150865 in state='finished'
[2025-06-04 03:11:06] 2025-06-04 07:10:44,468 | INFO     | this job has now completed (state=finished)
[2025-06-04 03:11:06] 2025-06-04 07:10:44,468 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 03:11:06] 2025-06-04 07:10:44,468 | INFO     | log transfer has been attempted: DONE
[2025-06-04 03:11:06] 2025-06-04 07:10:44,468 | INFO     | job 6678150865 has finished - writing final server update
[2025-06-04 03:11:06] 2025-06-04 07:10:44,469 | INFO     | total number of processed events: 400 (read)
[2025-06-04 03:11:06] 2025-06-04 07:10:44,487 | INFO     | executing command: lscpu
[2025-06-04 03:11:06] 2025-06-04 07:10:44,541 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 03:11:06] 2025-06-04 07:10:46,740 | INFO     | monitor loop #237: job 0:6678150865 is in state 'finished'
[2025-06-04 03:11:06] 2025-06-04 07:10:46,740 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:11:06] 2025-06-04 07:10:46,924 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 03:11:06] 2025-06-04 07:10:46,924 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678150865/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 03:11:06] 2025-06-04 07:10:46,924 | INFO     | extracted standard info from prmon json
[2025-06-04 03:11:06] 2025-06-04 07:10:46,925 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 03:11:06] 2025-06-04 07:10:46,925 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 03:11:06] 2025-06-04 07:10:46,925 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 03:11:06] 2025-06-04 07:10:46,925 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 03:11:06] 2025-06-04 07:10:46,926 | INFO     | fitting pss+swap vs Time
[2025-06-04 03:11:06] 2025-06-04 07:10:46,926 | INFO     | sum of square deviations: 26400495.0
[2025-06-04 03:11:06] 2025-06-04 07:10:46,926 | INFO     | sum of deviations: 4293859082.5000005
[2025-06-04 03:11:06] 2025-06-04 07:10:46,926 | INFO     | mean x: 1749019562.5
[2025-06-04 03:11:06] 2025-06-04 07:10:46,926 | INFO     | mean y: 2307060.159090909
[2025-06-04 03:11:06] 2025-06-04 07:10:46,926 | INFO     | -- intersect: -284463705183.5811
[2025-06-04 03:11:06] 2025-06-04 07:10:46,926 | INFO     | intersect: -284463705183.5811
[2025-06-04 03:11:06] 2025-06-04 07:10:46,926 | INFO     | chi2: 0.5275106136653861
[2025-06-04 03:11:06] 2025-06-04 07:10:46,926 | INFO     | -- intersect: -284463705183.5811
[2025-06-04 03:11:06] 2025-06-04 07:10:46,926 | INFO     | current memory leak: 162.64 B/s (using 44 data points, chi2=0.53)
[2025-06-04 03:11:06] 2025-06-04 07:10:46,927 | INFO     | ..............................
[2025-06-04 03:11:06] 2025-06-04 07:10:46,927 | INFO     | . Timing measurements:
[2025-06-04 03:11:06] 2025-06-04 07:10:46,927 | INFO     | . get job = 0 s
[2025-06-04 03:11:06] 2025-06-04 07:10:46,927 | INFO     | . initial setup = 2 s
[2025-06-04 03:11:06] 2025-06-04 07:10:46,927 | INFO     | . payload setup = 3 s
[2025-06-04 03:11:06] 2025-06-04 07:10:46,927 | INFO     | . stage-in = 0 s
[2025-06-04 03:11:06] 2025-06-04 07:10:46,927 | INFO     | . payload execution = 3095 s
[2025-06-04 03:11:06] 2025-06-04 07:10:46,927 | INFO     | . stage-out = 0 s
[2025-06-04 03:11:06] 2025-06-04 07:10:46,927 | INFO     | . log creation = 0 s
[2025-06-04 03:11:06] 2025-06-04 07:10:46,927 | INFO     | ..............................
[2025-06-04 03:11:06] 2025-06-04 07:10:47,095 | INFO     | 
[2025-06-04 03:11:06] 2025-06-04 07:10:47,095 | INFO     | job summary report
[2025-06-04 03:11:06] 2025-06-04 07:10:47,095 | INFO     | --------------------------------------------------
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | PanDA job id: 6678150865
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | task id: 45006595
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | errors: (none)
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | pilot state: finished 
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | transexitcode: 0
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | exeerrorcode: 0
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | exeerrordiag: 
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | exitcode: 0
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | exitmsg: OK
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | cpuconsumptiontime: 19966 s
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | nevents: 400
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | neventsw: 0
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | pid: 2913453
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | pgrp: 2913453
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | corecount: 8
[2025-06-04 03:11:06] 2025-06-04 07:10:47,096 | INFO     | event service: False
[2025-06-04 03:11:06] 2025-06-04 07:10:47,097 | INFO     | sizes: {0: 2404356, 1: 2405212, 3: 2405418, 11: 2405446, 3102: 2439776, 3104: 2439776, 3107: 2440074}
[2025-06-04 03:11:06] 2025-06-04 07:10:47,097 | INFO     | --------------------------------------------------
[2025-06-04 03:11:06] 2025-06-04 07:10:47,097 | INFO     | 
[2025-06-04 03:11:06] 2025-06-04 07:10:47,097 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 03:11:06] 2025-06-04 07:10:47,111 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,111 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,111 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,111 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,111 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,111 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,111 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,111 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,111 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,111 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,112 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,112 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,112 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,112 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,112 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,112 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,112 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,112 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 03:11:06] 2025-06-04 07:10:47,112 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,112 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 03:11:06] 2025-06-04 07:10:47,112 | INFO     | job 6678150865 has completed (purged errors)
[2025-06-04 03:11:06] 2025-06-04 07:10:47,112 | INFO     | overall cleanup function is called
[2025-06-04 03:11:06] 2025-06-04 07:10:48,118 | INFO     | --- collectZombieJob: --- 10, [2913453]
[2025-06-04 03:11:06] 2025-06-04 07:10:48,118 | INFO     | zombie collector waiting for pid 2913453
[2025-06-04 03:11:06] 2025-06-04 07:10:48,119 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 03:11:06] 2025-06-04 07:10:48,119 | INFO     | collected zombie processes
[2025-06-04 03:11:06] 2025-06-04 07:10:48,119 | INFO     | will attempt to kill all subprocesses of pid=2913453
[2025-06-04 03:11:06] 2025-06-04 07:10:48,293 | INFO     | process IDs to be killed: [2913453] (in reverse order)
[2025-06-04 03:11:06] 2025-06-04 07:10:48,348 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 03:11:06] 2025-06-04 07:10:48,348 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 03:11:06] 2025-06-04 07:10:48,356 | INFO     | did not find any defunct processes belonging to 2913453
[2025-06-04 03:11:06] 2025-06-04 07:10:48,364 | INFO     | did not find any defunct processes belonging to 2913453
[2025-06-04 03:11:06] 2025-06-04 07:10:48,364 | INFO     | ready for new job
[2025-06-04 03:11:06] 2025-06-04 07:10:48,364 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 03:11:06] 2025-06-04 07:10:48,365 | INFO     | **************************************
[2025-06-04 03:11:06] 2025-06-04 07:10:48,365 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 03:11:06] 2025-06-04 07:10:48,365 | INFO     | **************************************
[2025-06-04 03:11:06] 2025-06-04 07:10:48,365 | INFO     | 
[2025-06-04 03:11:06] 2025-06-04 07:10:48,380 | INFO     | architecture information:
[2025-06-04 03:11:06] 2025-06-04 07:10:48,380 | INFO     | executing command: cat /etc/os-release
[2025-06-04 03:11:06] 2025-06-04 07:10:48,390 | INFO     | cat /etc/os-release:
[2025-06-04 03:11:06] NAME="CentOS Linux"
[2025-06-04 03:11:06] VERSION="7 (Core)"
[2025-06-04 03:11:06] ID="centos"
[2025-06-04 03:11:06] ID_LIKE="rhel fedora"
[2025-06-04 03:11:06] VERSION_ID="7"
[2025-06-04 03:11:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 03:11:06] ANSI_COLOR="0;31"
[2025-06-04 03:11:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 03:11:06] HOME_URL="https://www.centos.org/"
[2025-06-04 03:11:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 03:11:06] 
[2025-06-04 03:11:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 03:11:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 03:11:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 03:11:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 03:11:06] 
[2025-06-04 03:11:06] 2025-06-04 07:10:48,391 | INFO     | **************************************
[2025-06-04 03:11:06] 2025-06-04 07:10:48,892 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 03:11:06] 2025-06-04 07:10:48,902 | INFO     | sufficient remaining disk space (95423561728 B)
[2025-06-04 03:11:06] 2025-06-04 07:10:48,902 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 03:11:06] 2025-06-04 07:10:48,903 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 03:11:06] 2025-06-04 07:10:48,903 | INFO     | update_server=False
[2025-06-04 03:11:06] 2025-06-04 07:10:48,903 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 03:11:06] 2025-06-04 07:10:48,903 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:11:06] 2025-06-04 07:10:48,903 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 03:11:06] 2025-06-04 07:10:48,904 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 03:11:06] 2025-06-04 07:10:48,904 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 03:11:06] 2025-06-04 07:10:48,904 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 03:11:06] 2025-06-04 07:10:49,243 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 03:11:06] 2025-06-04 07:10:49,243 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 03:11:06] 2025-06-04 07:10:49,243 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:11:06] 2025-06-04 07:10:49,243 | INFO     | will abort loop
[2025-06-04 03:11:06] 2025-06-04 07:10:49,260 | INFO     | all job control threads have been joined
[2025-06-04 03:11:06] 2025-06-04 07:10:49,908 | INFO     | [job] retrieve thread has finished
[2025-06-04 03:11:06] 2025-06-04 07:10:49,909 | INFO     | [job] queue monitor thread has finished
[2025-06-04 03:11:06] 2025-06-04 07:10:49,923 | INFO     | all data control threads have been joined
[2025-06-04 03:11:06] 2025-06-04 07:10:49,939 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 03:11:06] 2025-06-04 07:10:50,018 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 03:11:06] 2025-06-04 07:10:50,033 | INFO     | all payload control threads have been joined
[2025-06-04 03:11:06] 2025-06-04 07:10:50,245 | INFO     | [job] job monitor thread has finished
[2025-06-04 03:11:06] 2025-06-04 07:10:50,265 | INFO     | [job] control thread has finished
[2025-06-04 03:11:06] 2025-06-04 07:10:50,344 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 03:11:06] 2025-06-04 07:10:50,497 | INFO     | [payload] validate_post thread has finished
[2025-06-04 03:11:06] 2025-06-04 07:10:50,644 | INFO     | [data] copytool_in thread has finished
[2025-06-04 03:11:06] 2025-06-04 07:10:50,929 | INFO     | [data] control thread has finished
[2025-06-04 03:11:06] 2025-06-04 07:10:51,039 | INFO     | [payload] control thread has finished
[2025-06-04 03:11:06] 2025-06-04 07:10:51,067 | INFO     | [payload] failed_post thread has finished
[2025-06-04 03:11:06] 2025-06-04 07:10:51,194 | INFO     | [job] validate thread has finished
[2025-06-04 03:11:06] 2025-06-04 07:10:51,319 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 03:11:06] 2025-06-04 07:10:51,326 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 03:11:06] 2025-06-04 07:10:52,023 | INFO     | [data] copytool_out thread has finished
[2025-06-04 03:11:06] 2025-06-04 07:10:54,350 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 03:11:06] 2025-06-04 07:10:59,706 | INFO     | job.realtimelogging is not enabled
[2025-06-04 03:11:06] 2025-06-04 07:11:00,712 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 03:11:06] 2025-06-04 07:11:01,055 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140061160548160)>', '<ExcThread(monitor, started 140060670281472)>']
[2025-06-04 03:11:06] 2025-06-04 07:11:01,966 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 03:11:06] 2025-06-04 07:11:01,966 | INFO     | [monitor] control thread has ended
[2025-06-04 03:11:06] 2025-06-04 07:11:06,080 | INFO     | all workflow threads have been joined
[2025-06-04 03:11:06] 2025-06-04 07:11:06,080 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 03:11:06] 2025-06-04 07:11:06,081 | INFO     | traces error code: 0
[2025-06-04 03:11:06] 2025-06-04 07:11:06,081 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 03:11:06] 2025-06-04 07:11:06,193 [wrapper] ==== pilot stdout END ====
[2025-06-04 03:11:06] 2025-06-04 07:11:06,194 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 03:11:06] 2025-06-04 07:11:06,196 [wrapper] pilotpid: 2906487
[2025-06-04 03:11:06] 2025-06-04 07:11:06,198 [wrapper] Pilot exit status: 0
[2025-06-04 03:11:06] 2025-06-04 07:11:06,204 [wrapper] pandaids: 6678150865
[2025-06-04 03:11:06] 2025-06-04 07:11:06,242 [wrapper] cleanup supervisor_pilot 3021585 2906488
[2025-06-04 03:11:06] 2025-06-04 07:11:06,244 [wrapper] Test setup, not cleaning
[2025-06-04 03:11:06] 2025-06-04 07:11:06,245 [wrapper] apfmon messages muted
[2025-06-04 03:11:06] 2025-06-04 07:11:06,246 [wrapper] ==== wrapper stdout END ====
[2025-06-04 03:11:06] 2025-06-04 07:11:06,248 [wrapper] ==== wrapper stderr END ====
[2025-06-04 03:11:06]  *** Error codes and diagnostics ***
[2025-06-04 03:11:06]     "exeErrorCode": 0,
[2025-06-04 03:11:06]     "exeErrorDiag": "",
[2025-06-04 03:11:06]     "pilotErrorCode": 0,
[2025-06-04 03:11:06]     "pilotErrorDiag": "",
[2025-06-04 03:11:06]  *** Listing of results directory ***
[2025-06-04 03:11:06] total 390316
[2025-06-04 03:11:06] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 17:57 pilot3.tar.gz
[2025-06-04 03:11:06] -rwx------. 1 boincer umatlas     37140 Jun  3 18:12 runpilot2-wrapper.sh
[2025-06-04 03:11:06] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 18:12 queuedata.json
[2025-06-04 03:11:06] -rw-r--r--. 1 boincer umatlas       100 Jun  4 02:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 03:11:06] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 02:18 run_atlas
[2025-06-04 03:11:06] -rw-r--r--. 1 boincer umatlas       105 Jun  4 02:18 job.xml
[2025-06-04 03:11:06] -rw-r--r--. 2 boincer umatlas 217503567 Jun  4 02:18 EVNT.45006593._001875.pool.root.1
[2025-06-04 03:11:06] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 02:18 start_atlas.sh
[2025-06-04 03:11:06] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 02:18 shared
[2025-06-04 03:11:06] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 02:18 input.tar.gz
[2025-06-04 03:11:06] -rw-r--r--. 1 boincer umatlas         0 Jun  4 02:18 boinc_lockfile
[2025-06-04 03:11:06] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 02:18 pandaJob.out
[2025-06-04 03:11:06] -rw-------. 1 boincer umatlas    986745 Jun  4 02:18 agis_schedconf.cvmfs.json
[2025-06-04 03:11:06] -rw-------. 1 boincer umatlas   1603667 Jun  4 02:18 agis_ddmendpoints.agis.ALL.json
[2025-06-04 03:11:06] drwx------. 4 boincer umatlas      4096 Jun  4 02:18 pilot3
[2025-06-04 03:11:06] -rw-r--r--. 1 boincer umatlas      6860 Jun  4 03:01 init_data.xml
[2025-06-04 03:11:06] -rw-r--r--. 1 boincer umatlas       529 Jun  4 03:10 boinc_task_state.xml
[2025-06-04 03:11:06] -rw-------. 1 boincer umatlas 177125742 Jun  4 03:10 HITS.45006595._046766.pool.root.1
[2025-06-04 03:11:06] -rw-------. 1 boincer umatlas      1034 Jun  4 03:10 memory_monitor_summary.json
[2025-06-04 03:11:06] -rw-------. 1 boincer umatlas    283131 Jun  4 03:10 log.45006595._046766.job.log.tgz.1
[2025-06-04 03:11:06] -rw-------. 1 boincer umatlas        95 Jun  4 03:10 pilot_heartbeat.json
[2025-06-04 03:11:06] -rw-------. 1 boincer umatlas      7715 Jun  4 03:10 heartbeat.json
[2025-06-04 03:11:06] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 03:11 boinc_mmap_file
[2025-06-04 03:11:06] -rw-r--r--. 1 boincer umatlas        27 Jun  4 03:11 wrapper_checkpoint.txt
[2025-06-04 03:11:06] -rw-------. 1 boincer umatlas      4734 Jun  4 03:11 pilotlog.txt
[2025-06-04 03:11:06] -rw-------. 1 boincer umatlas    325680 Jun  4 03:11 log.45006595._046766.job.log.1
[2025-06-04 03:11:06] -rw-------. 1 boincer umatlas       357 Jun  4 03:11 output.list
[2025-06-04 03:11:06] -rw-r--r--. 1 boincer umatlas       620 Jun  4 03:11 runtime_log
[2025-06-04 03:11:06] -rw-------. 1 boincer umatlas    624640 Jun  4 03:11 result.tar.gz
[2025-06-04 03:11:06] -rw-r--r--. 1 boincer umatlas      8669 Jun  4 03:11 runtime_log.err
[2025-06-04 03:11:06] -rw-------. 1 boincer umatlas       652 Jun  4 03:11 fOKKDmP3og7n9Rq4apOajLDm4fhM0noT9bVof3QYDmu6ZKDmuTMOVn.diag
[2025-06-04 03:11:06] -rw-r--r--. 1 boincer umatlas     21542 Jun  4 03:11 stderr.txt
[2025-06-04 03:11:06] HITS file was successfully produced:
[2025-06-04 03:11:06] -rw-------. 1 boincer umatlas 177125742 Jun  4 03:10 shared/HITS.pool.root.1
[2025-06-04 03:11:06]  *** Contents of shared directory: ***
[2025-06-04 03:11:06] total 386520
[2025-06-04 03:11:06] -rw-r--r--. 2 boincer umatlas 217503567 Jun  4 02:18 ATLAS.root_0
[2025-06-04 03:11:06] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 02:18 start_atlas.sh
[2025-06-04 03:11:06] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 02:18 input.tar.gz
[2025-06-04 03:11:06] -rw-------. 1 boincer umatlas 177125742 Jun  4 03:10 HITS.pool.root.1
[2025-06-04 03:11:06] -rw-------. 1 boincer umatlas    624640 Jun  4 03:11 result.tar.gz
03:11:07 (2902882): run_atlas exited; CPU time 20055.938049
03:11:07 (2902882): called boinc_finish(0)

</stderr_txt>
]]>

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