Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:13:30 (1352913): wrapper (7.7.26015): starting
02:13:30 (1352913): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 02:13:30] Arguments: --nthreads 8
[2025-06-04 02:13:30] Threads: 8
[2025-06-04 02:13:30] Checking for CVMFS
[2025-06-04 02:13:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 02:13:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 02:13:30] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 02:13:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 02:13:30] 2.12.6.0 61263 30957 146944 146770 3 687 31038021 40960001 41087 16776704 1 477523497 99.790 268220206 31721 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 02:13:30] CVMFS is ok
[2025-06-04 02:13:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 02:13:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 02:13:30] Further information can be found at the LHC@home message board.
[2025-06-04 02:13:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 02:13:30] Checking for apptainer binary...
[2025-06-04 02:13:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 02:13:30] Running /usr/bin/apptainer --version
[2025-06-04 02:13:31] apptainer version 1.4.1-1.el9
[2025-06-04 02:13:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 02:13:31] c8-7-5.aglt2.org
[2025-06-04 02:13:31] apptainer works
[2025-06-04 02:13:31] Set ATHENA_PROC_NUMBER=8
[2025-06-04 02:13:31] Set ATHENA_CORE_NUMBER=8
[2025-06-04 02:13:31] Starting ATLAS job with PandaID=6667366535
[2025-06-04 02:13:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 03:44:15]  *** The last 200 lines of the pilot log: ***
[2025-06-04 03:44:15]  protocol_id=None
[2025-06-04 03:44:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 03:44:15]  replicas=None
[2025-06-04 03:44:15]  scope=mc23_13p6TeV
[2025-06-04 03:44:15]  status=None
[2025-06-04 03:44:15]  status_code=0
[2025-06-04 03:44:15]  storage_token=
[2025-06-04 03:44:15]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6667366535/log.44871837._071575.job.log.tgz.1
[2025-06-04 03:44:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/e4/log.44871837._071575.job.log.tgz.1
[2025-06-04 03:44:15]  workdir=None
[2025-06-04 03:44:15] ]
[2025-06-04 03:44:15] 2025-06-04 07:43:44,723 | INFO     | transferring file log.44871837._071575.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6667366535/log.44871837._071575.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 03:44:15] 2025-06-04 07:43:44,723 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6667366535/log.44871837._071575.job.log.tgz.1 /tmp/boinchome/slots/2/log.44871837._071575.job
[2025-06-04 03:44:15] 2025-06-04 07:43:44,744 | INFO     | adding to output.list: log.44871837._071575.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/e4/log.44871837._071575.job.log.tg
[2025-06-04 03:44:15] 2025-06-04 07:43:44,745 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 03:44:15] 2025-06-04 07:43:44,745 | INFO     | summary of transferred files:
[2025-06-04 03:44:15] 2025-06-04 07:43:44,745 | INFO     |  -- lfn=log.44871837._071575.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 03:44:15] 2025-06-04 07:43:44,745 | INFO     | stage-out finished correctly
[2025-06-04 03:44:15] 2025-06-04 07:43:46,002 | INFO     | monitor loop #370: job 0:6667366535 is in state 'finished'
[2025-06-04 03:44:15] 2025-06-04 07:43:46,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:44:15] 2025-06-04 07:43:47,087 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 03:44:15] 2025-06-04 07:43:48,506 | INFO     | monitor loop #371: job 0:6667366535 is in state 'finished'
[2025-06-04 03:44:15] 2025-06-04 07:43:48,507 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:44:15] 2025-06-04 07:43:48,750 | INFO     | PID=1360386 has CPU usage=14.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 03:44:15] 2025-06-04 07:43:48,750 | INFO     | .. there are 72 such processes running
[2025-06-04 03:44:15] 2025-06-04 07:43:48,914 | INFO     | job 6667366535 has state=finished
[2025-06-04 03:44:15] 2025-06-04 07:43:48,914 | INFO     | preparing for final server update for job 6667366535 in state='finished'
[2025-06-04 03:44:15] 2025-06-04 07:43:48,915 | INFO     | this job has now completed (state=finished)
[2025-06-04 03:44:15] 2025-06-04 07:43:48,915 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 03:44:15] 2025-06-04 07:43:48,915 | INFO     | log transfer has been attempted: DONE
[2025-06-04 03:44:15] 2025-06-04 07:43:48,915 | INFO     | job 6667366535 has finished - writing final server update
[2025-06-04 03:44:15] 2025-06-04 07:43:48,915 | INFO     | total number of processed events: 400 (read)
[2025-06-04 03:44:15] 2025-06-04 07:43:48,937 | INFO     | executing command: lscpu
[2025-06-04 03:44:15] 2025-06-04 07:43:49,007 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 03:44:15] 2025-06-04 07:43:51,011 | INFO     | monitor loop #372: job 0:6667366535 is in state 'finished'
[2025-06-04 03:44:15] 2025-06-04 07:43:51,012 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:44:15] 2025-06-04 07:43:53,514 | INFO     | monitor loop #373: job 0:6667366535 is in state 'finished'
[2025-06-04 03:44:15] 2025-06-04 07:43:53,515 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:44:15] 2025-06-04 07:43:55,802 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 03:44:15] 2025-06-04 07:43:55,803 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6667366535/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 03:44:15] 2025-06-04 07:43:55,804 | INFO     | extracted standard info from prmon json
[2025-06-04 03:44:15] 2025-06-04 07:43:55,804 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 03:44:15] 2025-06-04 07:43:55,804 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 03:44:15] 2025-06-04 07:43:55,804 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 03:44:15] 2025-06-04 07:43:55,804 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 03:44:15] 2025-06-04 07:43:55,806 | INFO     | fitting pss+swap vs Time
[2025-06-04 03:44:15] 2025-06-04 07:43:55,806 | INFO     | sum of square deviations: 164765880.0
[2025-06-04 03:44:15] 2025-06-04 07:43:55,806 | INFO     | sum of deviations: 4667427626.999998
[2025-06-04 03:44:15] 2025-06-04 07:43:55,806 | INFO     | mean x: 1749020398.0
[2025-06-04 03:44:15] 2025-06-04 07:43:55,806 | INFO     | mean y: 2470193.3703703703
[2025-06-04 03:44:15] 2025-06-04 07:43:55,806 | INFO     | -- intersect: -49543140377.28742
[2025-06-04 03:44:15] 2025-06-04 07:43:55,806 | INFO     | intersect: -49543140377.28742
[2025-06-04 03:44:15] 2025-06-04 07:43:55,806 | INFO     | chi2: 0.8237087297557167
[2025-06-04 03:44:15] 2025-06-04 07:43:55,806 | INFO     | -- intersect: -49543140377.28742
[2025-06-04 03:44:15] 2025-06-04 07:43:55,807 | INFO     | current memory leak: 28.33 B/s (using 81 data points, chi2=0.82)
[2025-06-04 03:44:15] 2025-06-04 07:43:55,807 | INFO     | ..............................
[2025-06-04 03:44:15] 2025-06-04 07:43:55,807 | INFO     | . Timing measurements:
[2025-06-04 03:44:15] 2025-06-04 07:43:55,807 | INFO     | . get job = 0 s
[2025-06-04 03:44:15] 2025-06-04 07:43:55,807 | INFO     | . initial setup = 2 s
[2025-06-04 03:44:15] 2025-06-04 07:43:55,807 | INFO     | . payload setup = 7 s
[2025-06-04 03:44:15] 2025-06-04 07:43:55,807 | INFO     | . stage-in = 0 s
[2025-06-04 03:44:15] 2025-06-04 07:43:55,807 | INFO     | . payload execution = 5372 s
[2025-06-04 03:44:15] 2025-06-04 07:43:55,807 | INFO     | . stage-out = 0 s
[2025-06-04 03:44:15] 2025-06-04 07:43:55,807 | INFO     | . log creation = 0 s
[2025-06-04 03:44:15] 2025-06-04 07:43:55,807 | INFO     | ..............................
[2025-06-04 03:44:15] 2025-06-04 07:43:56,039 | INFO     | 
[2025-06-04 03:44:15] 2025-06-04 07:43:56,039 | INFO     | job summary report
[2025-06-04 03:44:15] 2025-06-04 07:43:56,039 | INFO     | --------------------------------------------------
[2025-06-04 03:44:15] 2025-06-04 07:43:56,039 | INFO     | PanDA job id: 6667366535
[2025-06-04 03:44:15] 2025-06-04 07:43:56,039 | INFO     | task id: 44871837
[2025-06-04 03:44:15] 2025-06-04 07:43:56,039 | INFO     | errors: (none)
[2025-06-04 03:44:15] 2025-06-04 07:43:56,039 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 03:44:15] 2025-06-04 07:43:56,039 | INFO     | pilot state: finished 
[2025-06-04 03:44:15] 2025-06-04 07:43:56,039 | INFO     | transexitcode: 0
[2025-06-04 03:44:15] 2025-06-04 07:43:56,039 | INFO     | exeerrorcode: 0
[2025-06-04 03:44:15] 2025-06-04 07:43:56,039 | INFO     | exeerrordiag: 
[2025-06-04 03:44:15] 2025-06-04 07:43:56,039 | INFO     | exitcode: 0
[2025-06-04 03:44:15] 2025-06-04 07:43:56,039 | INFO     | exitmsg: OK
[2025-06-04 03:44:15] 2025-06-04 07:43:56,040 | INFO     | cpuconsumptiontime: 31456 s
[2025-06-04 03:44:15] 2025-06-04 07:43:56,040 | INFO     | nevents: 400
[2025-06-04 03:44:15] 2025-06-04 07:43:56,040 | INFO     | neventsw: 0
[2025-06-04 03:44:15] 2025-06-04 07:43:56,040 | INFO     | pid: 1382817
[2025-06-04 03:44:15] 2025-06-04 07:43:56,040 | INFO     | pgrp: 1382817
[2025-06-04 03:44:15] 2025-06-04 07:43:56,040 | INFO     | corecount: 8
[2025-06-04 03:44:15] 2025-06-04 07:43:56,040 | INFO     | event service: False
[2025-06-04 03:44:15] 2025-06-04 07:43:56,040 | INFO     | sizes: {0: 2404406, 1: 2405262, 6: 2405468, 11: 2405496, 5383: 2432136, 5385: 2441077, 5387: 2441261, 5396: 2441431}
[2025-06-04 03:44:15] 2025-06-04 07:43:56,040 | INFO     | --------------------------------------------------
[2025-06-04 03:44:15] 2025-06-04 07:43:56,040 | INFO     | 
[2025-06-04 03:44:15] 2025-06-04 07:43:56,040 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-04 03:44:15] 2025-06-04 07:43:56,065 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,065 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,065 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,065 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,065 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | job 6667366535 has completed (purged errors)
[2025-06-04 03:44:15] 2025-06-04 07:43:56,066 | INFO     | overall cleanup function is called
[2025-06-04 03:44:15] 2025-06-04 07:43:57,072 | INFO     | --- collectZombieJob: --- 10, [1382817]
[2025-06-04 03:44:15] 2025-06-04 07:43:57,072 | INFO     | zombie collector waiting for pid 1382817
[2025-06-04 03:44:15] 2025-06-04 07:43:57,073 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 03:44:15] 2025-06-04 07:43:57,073 | INFO     | collected zombie processes
[2025-06-04 03:44:15] 2025-06-04 07:43:57,073 | INFO     | will attempt to kill all subprocesses of pid=1382817
[2025-06-04 03:44:15] 2025-06-04 07:43:57,560 | INFO     | process IDs to be killed: [1382817] (in reverse order)
[2025-06-04 03:44:15] 2025-06-04 07:43:57,774 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 03:44:15] 2025-06-04 07:43:57,774 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 03:44:15] 2025-06-04 07:43:57,807 | INFO     | did not find any defunct processes belonging to 1382817
[2025-06-04 03:44:15] 2025-06-04 07:43:57,838 | INFO     | did not find any defunct processes belonging to 1382817
[2025-06-04 03:44:15] 2025-06-04 07:43:57,838 | INFO     | ready for new job
[2025-06-04 03:44:15] 2025-06-04 07:43:57,838 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 03:44:15] 2025-06-04 07:43:57,840 | INFO     | **************************************
[2025-06-04 03:44:15] 2025-06-04 07:43:57,840 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 03:44:15] 2025-06-04 07:43:57,840 | INFO     | **************************************
[2025-06-04 03:44:15] 2025-06-04 07:43:57,840 | INFO     | 
[2025-06-04 03:44:15] 2025-06-04 07:43:57,857 | INFO     | architecture information:
[2025-06-04 03:44:15] 2025-06-04 07:43:57,857 | INFO     | executing command: cat /etc/os-release
[2025-06-04 03:44:15] 2025-06-04 07:43:57,873 | INFO     | cat /etc/os-release:
[2025-06-04 03:44:15] NAME="CentOS Linux"
[2025-06-04 03:44:15] VERSION="7 (Core)"
[2025-06-04 03:44:15] ID="centos"
[2025-06-04 03:44:15] ID_LIKE="rhel fedora"
[2025-06-04 03:44:15] VERSION_ID="7"
[2025-06-04 03:44:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 03:44:15] ANSI_COLOR="0;31"
[2025-06-04 03:44:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 03:44:15] HOME_URL="https://www.centos.org/"
[2025-06-04 03:44:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 03:44:15] 
[2025-06-04 03:44:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 03:44:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 03:44:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 03:44:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 03:44:15] 
[2025-06-04 03:44:15] 2025-06-04 07:43:57,873 | INFO     | **************************************
[2025-06-04 03:44:15] 2025-06-04 07:43:58,375 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-04 03:44:15] 2025-06-04 07:43:58,395 | INFO     | sufficient remaining disk space (171690688512 B)
[2025-06-04 03:44:15] 2025-06-04 07:43:58,396 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 03:44:15] 2025-06-04 07:43:58,396 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 03:44:15] 2025-06-04 07:43:58,396 | INFO     | update_server=False
[2025-06-04 03:44:15] 2025-06-04 07:43:58,396 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 03:44:15] 2025-06-04 07:43:58,396 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 03:44:15] 2025-06-04 07:43:58,397 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 03:44:15] 2025-06-04 07:43:58,522 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 03:44:15] 2025-06-04 07:43:58,522 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 03:44:15] 2025-06-04 07:43:58,522 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:44:15] 2025-06-04 07:43:58,523 | INFO     | will abort loop
[2025-06-04 03:44:15] 2025-06-04 07:43:58,642 | INFO     | all data control threads have been joined
[2025-06-04 03:44:15] 2025-06-04 07:43:58,791 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 03:44:15] 2025-06-04 07:43:58,792 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 03:44:15] 2025-06-04 07:43:58,792 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 03:44:15] 2025-06-04 07:43:59,401 | INFO     | [job] retrieve thread has finished
[2025-06-04 03:44:15] 2025-06-04 07:43:59,402 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 03:44:15] 2025-06-04 07:43:59,512 | INFO     | [job] validate thread has finished
[2025-06-04 03:44:15] 2025-06-04 07:43:59,515 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 03:44:15] 2025-06-04 07:43:59,527 | INFO     | [job] job monitor thread has finished
[2025-06-04 03:44:15] 2025-06-04 07:43:59,643 | INFO     | all job control threads have been joined
[2025-06-04 03:44:15] 2025-06-04 07:43:59,648 | INFO     | [data] control thread has finished
[2025-06-04 03:44:15] 2025-06-04 07:43:59,874 | INFO     | all payload control threads have been joined
[2025-06-04 03:44:15] 2025-06-04 07:43:59,979 | INFO     | [payload] failed_post thread has finished
[2025-06-04 03:44:15] 2025-06-04 07:44:00,051 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 03:44:15] 2025-06-04 07:44:00,401 | INFO     | [data] copytool_out thread has finished
[2025-06-04 03:44:15] 2025-06-04 07:44:00,412 | INFO     | [data] copytool_in thread has finished
[2025-06-04 03:44:15] 2025-06-04 07:44:00,486 | INFO     | [payload] validate_post thread has finished
[2025-06-04 03:44:15] 2025-06-04 07:44:00,648 | INFO     | [job] control thread has finished
[2025-06-04 03:44:15] 2025-06-04 07:44:00,878 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:44:15] 2025-06-04 07:44:00,879 | INFO     | [payload] control thread has finished
[2025-06-04 03:44:15] 2025-06-04 07:44:01,884 | INFO     | [job] queue monitor thread has finished
[2025-06-04 03:44:15] 2025-06-04 07:44:02,406 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 03:44:15] 2025-06-04 07:44:08,717 | INFO     | job.realtimelogging is not enabled
[2025-06-04 03:44:15] 2025-06-04 07:44:09,724 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 03:44:15] 2025-06-04 07:44:10,299 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139747222288192)>', '<ExcThread(monitor, started 139746709837568)>']
[2025-06-04 03:44:15] 2025-06-04 07:44:10,854 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 03:44:15] 2025-06-04 07:44:10,855 | INFO     | [monitor] control thread has ended
[2025-06-04 03:44:15] 2025-06-04 07:44:15,326 | INFO     | all workflow threads have been joined
[2025-06-04 03:44:15] 2025-06-04 07:44:15,326 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 03:44:15] 2025-06-04 07:44:15,327 | INFO     | traces error code: 0
[2025-06-04 03:44:15] 2025-06-04 07:44:15,327 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 03:44:15] 2025-06-04 07:44:15,450 [wrapper] ==== pilot stdout END ====
[2025-06-04 03:44:15] 2025-06-04 07:44:15,454 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 03:44:15] 2025-06-04 07:44:15,457 [wrapper] pilotpid: 1360386
[2025-06-04 03:44:15] 2025-06-04 07:44:15,460 [wrapper] Pilot exit status: 0
[2025-06-04 03:44:15] 2025-06-04 07:44:15,484 [wrapper] pandaids: 6667366535
[2025-06-04 03:44:15] 2025-06-04 07:44:15,620 [wrapper] cleanup supervisor_pilot   76446 1360387
[2025-06-04 03:44:15] 2025-06-04 07:44:15,624 [wrapper] Test setup, not cleaning
[2025-06-04 03:44:15] 2025-06-04 07:44:15,627 [wrapper] apfmon messages muted
[2025-06-04 03:44:15] 2025-06-04 07:44:15,630 [wrapper] ==== wrapper stdout END ====
[2025-06-04 03:44:15] 2025-06-04 07:44:15,632 [wrapper] ==== wrapper stderr END ====
[2025-06-04 03:44:15]  *** Error codes and diagnostics ***
[2025-06-04 03:44:15]     "exeErrorCode": 0,
[2025-06-04 03:44:15]     "exeErrorDiag": "",
[2025-06-04 03:44:15]     "pilotErrorCode": 0,
[2025-06-04 03:44:15]     "pilotErrorDiag": "",
[2025-06-04 03:44:15]  *** Listing of results directory ***
[2025-06-04 03:44:15] total 424168
[2025-06-04 03:44:15] -rw-r--r--. 1 boincer umatlas    495897 May 27 13:43 pilot3.tar.gz
[2025-06-04 03:44:15] -rw-r--r--. 1 boincer umatlas      5111 May 27 14:25 queuedata.json
[2025-06-04 03:44:15] -rwx------. 1 boincer umatlas     37140 May 27 14:27 runpilot2-wrapper.sh
[2025-06-04 03:44:15] -rw-r--r--. 1 boincer umatlas       100 Jun  4 02:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 03:44:15] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 02:13 run_atlas
[2025-06-04 03:44:15] -rw-r--r--. 1 boincer umatlas       105 Jun  4 02:13 job.xml
[2025-06-04 03:44:15] -rw-r--r--. 2 boincer umatlas 223699366 Jun  4 02:13 EVNT.44871834._002812.pool.root.1
[2025-06-04 03:44:15] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 02:13 start_atlas.sh
[2025-06-04 03:44:15] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 02:13 shared
[2025-06-04 03:44:15] -rw-r--r--. 2 boincer umatlas    508887 Jun  4 02:13 input.tar.gz
[2025-06-04 03:44:15] -rw-r--r--. 1 boincer umatlas         0 Jun  4 02:13 boinc_lockfile
[2025-06-04 03:44:15] -rw-r--r--. 1 boincer umatlas      2559 Jun  4 02:13 pandaJob.out
[2025-06-04 03:44:15] -rw-------. 1 boincer umatlas    986745 Jun  4 02:13 agis_schedconf.cvmfs.json
[2025-06-04 03:44:15] -rw-------. 1 boincer umatlas   1603667 Jun  4 02:13 agis_ddmendpoints.agis.ALL.json
[2025-06-04 03:44:15] drwx------. 4 boincer umatlas      4096 Jun  4 02:13 pilot3
[2025-06-04 03:44:15] -rw-r--r--. 1 boincer umatlas      7160 Jun  4 03:36 init_data.xml
[2025-06-04 03:44:15] -rw-------. 1 boincer umatlas        95 Jun  4 03:43 pilot_heartbeat.json
[2025-06-04 03:44:15] -rw-------. 1 boincer umatlas 205174649 Jun  4 03:43 HITS.44871837._071575.pool.root.1
[2025-06-04 03:44:15] -rw-r--r--. 1 boincer umatlas       529 Jun  4 03:43 boinc_task_state.xml
[2025-06-04 03:44:15] -rw-------. 1 boincer umatlas      1049 Jun  4 03:43 memory_monitor_summary.json
[2025-06-04 03:44:15] -rw-------. 1 boincer umatlas    306931 Jun  4 03:43 log.44871837._071575.job.log.tgz.1
[2025-06-04 03:44:15] -rw-------. 1 boincer umatlas      7714 Jun  4 03:43 heartbeat.json
[2025-06-04 03:44:15] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 03:44 boinc_mmap_file
[2025-06-04 03:44:15] -rw-r--r--. 1 boincer umatlas        27 Jun  4 03:44 wrapper_checkpoint.txt
[2025-06-04 03:44:15] -rw-------. 1 boincer umatlas      4612 Jun  4 03:44 pilotlog.txt
[2025-06-04 03:44:15] -rw-------. 1 boincer umatlas    511005 Jun  4 03:44 log.44871837._071575.job.log.1
[2025-06-04 03:44:15] -rw-------. 1 boincer umatlas       357 Jun  4 03:44 output.list
[2025-06-04 03:44:15] -rw-r--r--. 1 boincer umatlas       620 Jun  4 03:44 runtime_log
[2025-06-04 03:44:15] -rw-------. 1 boincer umatlas    839680 Jun  4 03:44 result.tar.gz
[2025-06-04 03:44:15] -rw-r--r--. 1 boincer umatlas      8649 Jun  4 03:44 runtime_log.err
[2025-06-04 03:44:15] -rw-------. 1 boincer umatlas       655 Jun  4 03:44 MbSNDmYCEe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmWESKDmYD7akm.diag
[2025-06-04 03:44:15] -rw-r--r--. 1 boincer umatlas     21794 Jun  4 03:44 stderr.txt
[2025-06-04 03:44:15] HITS file was successfully produced:
[2025-06-04 03:44:15] -rw-------. 1 boincer umatlas 205174649 Jun  4 03:43 shared/HITS.pool.root.1
[2025-06-04 03:44:15]  *** Contents of shared directory: ***
[2025-06-04 03:44:15] total 420172
[2025-06-04 03:44:15] -rw-r--r--. 2 boincer umatlas 223699366 Jun  4 02:13 ATLAS.root_0
[2025-06-04 03:44:15] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 02:13 start_atlas.sh
[2025-06-04 03:44:15] -rw-r--r--. 2 boincer umatlas    508887 Jun  4 02:13 input.tar.gz
[2025-06-04 03:44:15] -rw-------. 1 boincer umatlas 205174649 Jun  4 03:43 HITS.pool.root.1
[2025-06-04 03:44:15] -rw-------. 1 boincer umatlas    839680 Jun  4 03:44 result.tar.gz
03:44:16 (1352913): run_atlas exited; CPU time 31630.520390
03:44:16 (1352913): called boinc_finish(0)

</stderr_txt>
]]>

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