Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:07:57 (28827): wrapper (7.7.26015): starting
02:07:57 (28827): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 02:07:57] Arguments: --nthreads 12
[2025-06-04 02:07:57] Threads: 12
[2025-06-04 02:07:57] Checking for CVMFS
[2025-06-04 02:07:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 02:07:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 02:07:57] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 02:07:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 02:07:57] 2.11.2.0 3081 35254 87084 146770 4 1 17935438 20275201 1 130560 0 15342495 99.982 6200018 7437 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 02:07:57] CVMFS is ok
[2025-06-04 02:07:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 02:07:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 02:07:57] Further information can be found at the LHC@home message board.
[2025-06-04 02:07:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 02:07:57] Checking for apptainer binary...
[2025-06-04 02:07:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 02:07:57] Running /usr/bin/apptainer --version
[2025-06-04 02:07:57] apptainer version 1.3.2-1.el7
[2025-06-04 02:07:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 02:07:58] c-205-29.aglt2.org
[2025-06-04 02:07:58] apptainer works
[2025-06-04 02:07:58] Set ATHENA_PROC_NUMBER=12
[2025-06-04 02:07:58] Set ATHENA_CORE_NUMBER=12
[2025-06-04 02:07:58] Starting ATLAS job with PandaID=6678245436
[2025-06-04 02:07:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 03:10:01]  *** The last 200 lines of the pilot log: ***
[2025-06-04 03:10:01]  protocol_id=None
[2025-06-04 03:10:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 03:10:01]  replicas=None
[2025-06-04 03:10:01]  scope=mc23_13p6TeV
[2025-06-04 03:10:01]  status=None
[2025-06-04 03:10:01]  status_code=0
[2025-06-04 03:10:01]  storage_token=
[2025-06-04 03:10:01]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678245436/log.45006595._049635.job.log.tgz.1
[2025-06-04 03:10:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3b/79/log.45006595._049635.job.log.tgz.1
[2025-06-04 03:10:01]  workdir=None
[2025-06-04 03:10:01] ]
[2025-06-04 03:10:01] 2025-06-04 07:09:21,510 | INFO     | transferring file log.45006595._049635.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678245436/log.45006595._049635.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 03:10:01] 2025-06-04 07:09:21,510 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678245436/log.45006595._049635.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._049635.job
[2025-06-04 03:10:01] 2025-06-04 07:09:21,531 | INFO     | adding to output.list: log.45006595._049635.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3b/79/log.45006595._049635.job.log.tg
[2025-06-04 03:10:01] 2025-06-04 07:09:21,532 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 03:10:01] 2025-06-04 07:09:21,532 | INFO     | summary of transferred files:
[2025-06-04 03:10:01] 2025-06-04 07:09:21,533 | INFO     |  -- lfn=log.45006595._049635.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 03:10:01] 2025-06-04 07:09:21,533 | INFO     | stage-out finished correctly
[2025-06-04 03:10:01] 2025-06-04 07:09:21,620 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 03:10:01] 2025-06-04 07:09:22,627 | WARNING  | process 6912 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 03:10:01] 2025-06-04 07:09:22,628 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678245436/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 03:10:01] 2025-06-04 07:09:22,726 | INFO     | number of running child processes to parent process 6912: 1
[2025-06-04 03:10:01] 2025-06-04 07:09:22,726 | INFO     | maximum number of monitored processes: 6
[2025-06-04 03:10:01] 2025-06-04 07:09:24,515 | INFO     | job 6678245436 has state=finished
[2025-06-04 03:10:01] 2025-06-04 07:09:24,515 | INFO     | preparing for final server update for job 6678245436 in state='finished'
[2025-06-04 03:10:01] 2025-06-04 07:09:24,516 | INFO     | this job has now completed (state=finished)
[2025-06-04 03:10:01] 2025-06-04 07:09:24,516 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 03:10:01] 2025-06-04 07:09:24,516 | INFO     | log transfer has been attempted: DONE
[2025-06-04 03:10:01] 2025-06-04 07:09:24,517 | INFO     | job 6678245436 has finished - writing final server update
[2025-06-04 03:10:01] 2025-06-04 07:09:24,517 | INFO     | total number of processed events: 400 (read)
[2025-06-04 03:10:01] 2025-06-04 07:09:24,517 | INFO     | executing command: lscpu
[2025-06-04 03:10:01] 2025-06-04 07:09:24,543 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 03:10:01] 2025-06-04 07:09:25,229 | INFO     | monitor loop #277: job 0:6678245436 is in state 'finished'
[2025-06-04 03:10:01] 2025-06-04 07:09:25,230 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:10:01] 2025-06-04 07:09:27,732 | INFO     | monitor loop #278: job 0:6678245436 is in state 'finished'
[2025-06-04 03:10:01] 2025-06-04 07:09:27,732 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:10:01] 2025-06-04 07:09:29,122 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-04 03:10:01] 2025-06-04 07:09:29,126 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1673.5833333333333
[2025-06-04 03:10:01] 2025-06-04 07:09:29,128 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678245436/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 03:10:01] 2025-06-04 07:09:29,129 | INFO     | extracted standard info from prmon json
[2025-06-04 03:10:01] 2025-06-04 07:09:29,129 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 03:10:01] 2025-06-04 07:09:29,129 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 03:10:01] 2025-06-04 07:09:29,130 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 03:10:01] 2025-06-04 07:09:29,130 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 03:10:01] 2025-06-04 07:09:29,132 | INFO     | fitting pss+swap vs Time
[2025-06-04 03:10:01] 2025-06-04 07:09:29,132 | INFO     | sum of square deviations: 46147842.0
[2025-06-04 03:10:01] 2025-06-04 07:09:29,132 | INFO     | sum of deviations: -555849080.0000001
[2025-06-04 03:10:01] 2025-06-04 07:09:29,133 | INFO     | mean x: 1749019214.0
[2025-06-04 03:10:01] 2025-06-04 07:09:29,133 | INFO     | mean y: 2670078.132075472
[2025-06-04 03:10:01] 2025-06-04 07:09:29,133 | INFO     | -- intersect: 21069542956.049603
[2025-06-04 03:10:01] 2025-06-04 07:09:29,133 | INFO     | intersect: 21069542956.049603
[2025-06-04 03:10:01] 2025-06-04 07:09:29,133 | INFO     | chi2: 0.01969912654889176
[2025-06-04 03:10:01] 2025-06-04 07:09:29,134 | INFO     | -- intersect: 21069542956.049603
[2025-06-04 03:10:01] 2025-06-04 07:09:29,134 | INFO     | current memory leak: -12.04 B/s (using 53 data points, chi2=0.02)
[2025-06-04 03:10:01] 2025-06-04 07:09:29,134 | INFO     | could have reported an average CPU frequency of 1902 MHz (6 samples)
[2025-06-04 03:10:01] 2025-06-04 07:09:29,134 | INFO     | ..............................
[2025-06-04 03:10:01] 2025-06-04 07:09:29,134 | INFO     | . Timing measurements:
[2025-06-04 03:10:01] 2025-06-04 07:09:29,135 | INFO     | . get job = 0 s
[2025-06-04 03:10:01] 2025-06-04 07:09:29,135 | INFO     | . initial setup = 2 s
[2025-06-04 03:10:01] 2025-06-04 07:09:29,135 | INFO     | . payload setup = 9 s
[2025-06-04 03:10:01] 2025-06-04 07:09:29,135 | INFO     | . stage-in = 0 s
[2025-06-04 03:10:01] 2025-06-04 07:09:29,135 | INFO     | . payload execution = 3639 s
[2025-06-04 03:10:01] 2025-06-04 07:09:29,135 | INFO     | . stage-out = 0 s
[2025-06-04 03:10:01] 2025-06-04 07:09:29,135 | INFO     | . log creation = 0 s
[2025-06-04 03:10:01] 2025-06-04 07:09:29,135 | INFO     | ..............................
[2025-06-04 03:10:01] 2025-06-04 07:09:29,381 | INFO     | PID=32462 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 03:10:01] 2025-06-04 07:09:29,580 | INFO     | 
[2025-06-04 03:10:01] 2025-06-04 07:09:29,580 | INFO     | job summary report
[2025-06-04 03:10:01] 2025-06-04 07:09:29,580 | INFO     | --------------------------------------------------
[2025-06-04 03:10:01] 2025-06-04 07:09:29,580 | INFO     | PanDA job id: 6678245436
[2025-06-04 03:10:01] 2025-06-04 07:09:29,580 | INFO     | task id: 45006595
[2025-06-04 03:10:01] 2025-06-04 07:09:29,581 | INFO     | errors: (none)
[2025-06-04 03:10:01] 2025-06-04 07:09:29,581 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 03:10:01] 2025-06-04 07:09:29,581 | INFO     | pilot state: finished 
[2025-06-04 03:10:01] 2025-06-04 07:09:29,581 | INFO     | transexitcode: 0
[2025-06-04 03:10:01] 2025-06-04 07:09:29,581 | INFO     | exeerrorcode: 0
[2025-06-04 03:10:01] 2025-06-04 07:09:29,581 | INFO     | exeerrordiag: 
[2025-06-04 03:10:01] 2025-06-04 07:09:29,581 | INFO     | exitcode: 0
[2025-06-04 03:10:01] 2025-06-04 07:09:29,582 | INFO     | exitmsg: OK
[2025-06-04 03:10:01] 2025-06-04 07:09:29,582 | INFO     | cpuconsumptiontime: 39685 s
[2025-06-04 03:10:01] 2025-06-04 07:09:29,582 | INFO     | nevents: 400
[2025-06-04 03:10:01] 2025-06-04 07:09:29,582 | INFO     | neventsw: 0
[2025-06-04 03:10:01] 2025-06-04 07:09:29,582 | INFO     | pid: 6912
[2025-06-04 03:10:01] 2025-06-04 07:09:29,582 | INFO     | pgrp: 6912
[2025-06-04 03:10:01] 2025-06-04 07:09:29,583 | INFO     | corecount: 12
[2025-06-04 03:10:01] 2025-06-04 07:09:29,583 | INFO     | event service: False
[2025-06-04 03:10:01] 2025-06-04 07:09:29,583 | INFO     | sizes: {0: 2405525, 5: 2405787, 11: 2405843, 3652: 2431574, 3653: 2440571, 3661: 2440709}
[2025-06-04 03:10:01] 2025-06-04 07:09:29,583 | INFO     | --------------------------------------------------
[2025-06-04 03:10:01] 2025-06-04 07:09:29,583 | INFO     | 
[2025-06-04 03:10:01] 2025-06-04 07:09:29,583 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 03:10:01] 2025-06-04 07:09:29,607 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,607 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,607 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,607 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,608 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,608 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,608 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,608 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,608 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,608 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,609 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,609 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,609 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,609 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,609 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,609 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,610 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,610 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 03:10:01] 2025-06-04 07:09:29,610 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,610 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 03:10:01] 2025-06-04 07:09:29,610 | INFO     | job 6678245436 has completed (purged errors)
[2025-06-04 03:10:01] 2025-06-04 07:09:29,611 | INFO     | overall cleanup function is called
[2025-06-04 03:10:01] 2025-06-04 07:09:30,619 | INFO     | --- collectZombieJob: --- 10, [6912]
[2025-06-04 03:10:01] 2025-06-04 07:09:30,619 | INFO     | zombie collector waiting for pid 6912
[2025-06-04 03:10:01] 2025-06-04 07:09:30,619 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 03:10:01] 2025-06-04 07:09:30,619 | INFO     | collected zombie processes
[2025-06-04 03:10:01] 2025-06-04 07:09:30,620 | INFO     | will attempt to kill all subprocesses of pid=6912
[2025-06-04 03:10:01] 2025-06-04 07:09:30,712 | INFO     | process IDs to be killed: [6912] (in reverse order)
[2025-06-04 03:10:01] 2025-06-04 07:09:30,770 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 03:10:01] 2025-06-04 07:09:30,771 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 03:10:01] 2025-06-04 07:09:30,774 | INFO     | did not find any defunct processes belonging to 6912
[2025-06-04 03:10:01] 2025-06-04 07:09:30,777 | INFO     | did not find any defunct processes belonging to 6912
[2025-06-04 03:10:01] 2025-06-04 07:09:30,777 | INFO     | ready for new job
[2025-06-04 03:10:01] 2025-06-04 07:09:30,777 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 03:10:01] 2025-06-04 07:09:30,778 | INFO     | ***************************************
[2025-06-04 03:10:01] 2025-06-04 07:09:30,778 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-04 03:10:01] 2025-06-04 07:09:30,778 | INFO     | ***************************************
[2025-06-04 03:10:01] 2025-06-04 07:09:30,778 | INFO     | 
[2025-06-04 03:10:01] 2025-06-04 07:09:30,779 | INFO     | architecture information:
[2025-06-04 03:10:01] 2025-06-04 07:09:30,779 | INFO     | executing command: cat /etc/os-release
[2025-06-04 03:10:01] 2025-06-04 07:09:30,794 | INFO     | cat /etc/os-release:
[2025-06-04 03:10:01] NAME="CentOS Linux"
[2025-06-04 03:10:01] VERSION="7 (Core)"
[2025-06-04 03:10:01] ID="centos"
[2025-06-04 03:10:01] ID_LIKE="rhel fedora"
[2025-06-04 03:10:01] VERSION_ID="7"
[2025-06-04 03:10:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 03:10:01] ANSI_COLOR="0;31"
[2025-06-04 03:10:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 03:10:01] HOME_URL="https://www.centos.org/"
[2025-06-04 03:10:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 03:10:01] 
[2025-06-04 03:10:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 03:10:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 03:10:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 03:10:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 03:10:01] 
[2025-06-04 03:10:01] 2025-06-04 07:09:30,795 | INFO     | ***************************************
[2025-06-04 03:10:01] 2025-06-04 07:09:31,298 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 03:10:01] 2025-06-04 07:09:31,313 | INFO     | sufficient remaining disk space (29428285440 B)
[2025-06-04 03:10:01] 2025-06-04 07:09:31,313 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 03:10:01] 2025-06-04 07:09:31,313 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 03:10:01] 2025-06-04 07:09:31,313 | INFO     | update_server=False
[2025-06-04 03:10:01] 2025-06-04 07:09:31,313 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 03:10:01] 2025-06-04 07:09:31,314 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:10:01] 2025-06-04 07:09:31,314 | INFO     | aborting loop
[2025-06-04 03:10:01] 2025-06-04 07:09:31,798 | INFO     | all payload control threads have been joined
[2025-06-04 03:10:01] 2025-06-04 07:09:31,910 | INFO     | all data control threads have been joined
[2025-06-04 03:10:01] 2025-06-04 07:09:32,133 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 03:10:01] 2025-06-04 07:09:32,213 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 03:10:01] 2025-06-04 07:09:32,319 | INFO     | [job] retrieve thread has finished
[2025-06-04 03:10:01] 2025-06-04 07:09:32,319 | INFO     | [job] job monitor thread has finished
[2025-06-04 03:10:01] 2025-06-04 07:09:32,355 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 03:10:01] 2025-06-04 07:09:32,383 | INFO     | [payload] failed_post thread has finished
[2025-06-04 03:10:01] 2025-06-04 07:09:32,472 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 03:10:01] 2025-06-04 07:09:32,804 | INFO     | [payload] control thread has finished
[2025-06-04 03:10:01] 2025-06-04 07:09:32,851 | INFO     | all job control threads have been joined
[2025-06-04 03:10:01] 2025-06-04 07:09:32,889 | INFO     | [data] copytool_in thread has finished
[2025-06-04 03:10:01] 2025-06-04 07:09:32,915 | INFO     | [data] control thread has finished
[2025-06-04 03:10:01] 2025-06-04 07:09:32,952 | INFO     | [payload] validate_post thread has finished
[2025-06-04 03:10:01] 2025-06-04 07:09:33,376 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 03:10:01] 2025-06-04 07:09:33,673 | INFO     | [job] validate thread has finished
[2025-06-04 03:10:01] 2025-06-04 07:09:33,856 | INFO     | [job] control thread has finished
[2025-06-04 03:10:01] 2025-06-04 07:09:34,139 | INFO     | [data] copytool_out thread has finished
[2025-06-04 03:10:01] 2025-06-04 07:09:34,230 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:10:01] 2025-06-04 07:09:35,235 | INFO     | [job] queue monitor thread has finished
[2025-06-04 03:10:01] 2025-06-04 07:09:36,218 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 03:10:01] 2025-06-04 07:09:41,919 | INFO     | job.realtimelogging is not enabled
[2025-06-04 03:10:01] 2025-06-04 07:09:42,924 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 03:10:01] 2025-06-04 07:09:43,345 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139659317106496)>', '<ExcThread(monitor, started 139658377819904)>']
[2025-06-04 03:10:01] 2025-06-04 07:09:48,370 | INFO     | all workflow threads have been joined
[2025-06-04 03:10:01] 2025-06-04 07:09:48,370 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 03:10:01] 2025-06-04 07:09:48,371 | INFO     | traces error code: 0
[2025-06-04 03:10:01] 2025-06-04 07:09:48,371 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 03:10:01] 2025-06-04 07:10:01,583 | INFO     | PID=32462 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 03:10:01] 2025-06-04 07:10:01,589 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 03:10:01] 2025-06-04 07:10:01,589 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 03:10:01] 2025-06-04 07:10:01,589 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 03:10:01] 2025-06-04 07:10:01,589 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 03:10:01] 2025-06-04 07:10:01,590 | INFO     | [monitor] control thread has ended
[2025-06-04 03:10:01] 2025-06-04 07:10:01,672 [wrapper] ==== pilot stdout END ====
[2025-06-04 03:10:01] 2025-06-04 07:10:01,676 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 03:10:01] 2025-06-04 07:10:01,679 [wrapper] pilotpid: 32462
[2025-06-04 03:10:01] 2025-06-04 07:10:01,683 [wrapper] Pilot exit status: 0
[2025-06-04 03:10:01] 2025-06-04 07:10:01,700 [wrapper] pandaids: 6678245436
[2025-06-04 03:10:01] 2025-06-04 07:10:01,740 [wrapper] cleanup supervisor_pilot 11802 32463
[2025-06-04 03:10:01] 2025-06-04 07:10:01,744 [wrapper] Test setup, not cleaning
[2025-06-04 03:10:01] 2025-06-04 07:10:01,748 [wrapper] apfmon messages muted
[2025-06-04 03:10:01] 2025-06-04 07:10:01,752 [wrapper] ==== wrapper stdout END ====
[2025-06-04 03:10:01] 2025-06-04 07:10:01,756 [wrapper] ==== wrapper stderr END ====
[2025-06-04 03:10:01]  *** Error codes and diagnostics ***
[2025-06-04 03:10:01]     "exeErrorCode": 0,
[2025-06-04 03:10:01]     "exeErrorDiag": "",
[2025-06-04 03:10:01]     "pilotErrorCode": 0,
[2025-06-04 03:10:01]     "pilotErrorDiag": "",
[2025-06-04 03:10:01]  *** Listing of results directory ***
[2025-06-04 03:10:01] total 383016
[2025-06-04 03:10:01] -rw-r--r-- 1 boincer umatlas    549845 Jun  2 05:40 pilot3.tar.gz
[2025-06-04 03:10:01] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 21:04 queuedata.json
[2025-06-04 03:10:01] -rwx------ 1 boincer umatlas     37140 Jun  3 21:04 runpilot2-wrapper.sh
[2025-06-04 03:10:01] -rw-r--r-- 1 boincer umatlas       100 Jun  4 02:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 03:10:01] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 02:07 run_atlas
[2025-06-04 03:10:01] -rw-r--r-- 1 boincer umatlas       105 Jun  4 02:07 job.xml
[2025-06-04 03:10:01] -rw-r--r-- 2 boincer umatlas 212920962 Jun  4 02:07 EVNT.45006593._001990.pool.root.1
[2025-06-04 03:10:01] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 02:07 start_atlas.sh
[2025-06-04 03:10:01] drwxrwx--x 2 boincer umatlas      4096 Jun  4 02:07 shared
[2025-06-04 03:10:01] -rw-r--r-- 2 boincer umatlas    564116 Jun  4 02:07 input.tar.gz
[2025-06-04 03:10:01] -rw-r--r-- 1 boincer umatlas         0 Jun  4 02:07 boinc_lockfile
[2025-06-04 03:10:01] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 02:07 pandaJob.out
[2025-06-04 03:10:01] -rw------- 1 boincer umatlas    986745 Jun  4 02:08 agis_schedconf.cvmfs.json
[2025-06-04 03:10:01] -rw------- 1 boincer umatlas   1603667 Jun  4 02:08 agis_ddmendpoints.agis.ALL.json
[2025-06-04 03:10:01] drwx------ 6 boincer umatlas      4096 Jun  4 02:08 pilot3
[2025-06-04 03:10:01] -rw-r--r-- 1 boincer umatlas      5868 Jun  4 03:01 init_data.xml
[2025-06-04 03:10:01] -rw------- 1 boincer umatlas 173892087 Jun  4 03:08 HITS.45006595._049635.pool.root.1
[2025-06-04 03:10:01] -rw------- 1 boincer umatlas      1049 Jun  4 03:09 memory_monitor_summary.json
[2025-06-04 03:10:01] -rw------- 1 boincer umatlas    357810 Jun  4 03:09 log.45006595._049635.job.log.tgz.1
[2025-06-04 03:10:01] -rw-r--r-- 1 boincer umatlas       529 Jun  4 03:09 boinc_task_state.xml
[2025-06-04 03:10:01] -rw------- 1 boincer umatlas      7776 Jun  4 03:09 heartbeat.json
[2025-06-04 03:10:01] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 03:09 boinc_mmap_file
[2025-06-04 03:10:01] -rw-r--r-- 1 boincer umatlas        27 Jun  4 03:09 wrapper_checkpoint.txt
[2025-06-04 03:10:01] -rw------- 1 boincer umatlas        95 Jun  4 03:10 pilot_heartbeat.json
[2025-06-04 03:10:01] -rw------- 1 boincer umatlas       745 Jun  4 03:10 pilotlog.txt
[2025-06-04 03:10:01] -rw------- 1 boincer umatlas    369388 Jun  4 03:10 log.45006595._049635.job.log.1
[2025-06-04 03:10:01] -rw------- 1 boincer umatlas       357 Jun  4 03:10 output.list
[2025-06-04 03:10:01] -rw-r--r-- 1 boincer umatlas       620 Jun  4 03:10 runtime_log
[2025-06-04 03:10:01] -rw------- 1 boincer umatlas    747520 Jun  4 03:10 result.tar.gz
[2025-06-04 03:10:01] -rw------- 1 boincer umatlas       659 Jun  4 03:10 LMPKDmUjrg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2jmKDmyMxqNo.diag
[2025-06-04 03:10:01] -rw-r--r-- 1 boincer umatlas      8661 Jun  4 03:10 runtime_log.err
[2025-06-04 03:10:01] -rw-r--r-- 1 boincer umatlas     21890 Jun  4 03:10 stderr.txt
[2025-06-04 03:10:01] HITS file was successfully produced:
[2025-06-04 03:10:01] -rw------- 1 boincer umatlas 173892087 Jun  4 03:08 shared/HITS.pool.root.1
[2025-06-04 03:10:01]  *** Contents of shared directory: ***
[2025-06-04 03:10:01] total 379056
[2025-06-04 03:10:01] -rw-r--r-- 2 boincer umatlas 212920962 Jun  4 02:07 ATLAS.root_0
[2025-06-04 03:10:01] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 02:07 start_atlas.sh
[2025-06-04 03:10:01] -rw-r--r-- 2 boincer umatlas    564116 Jun  4 02:07 input.tar.gz
[2025-06-04 03:10:01] -rw------- 1 boincer umatlas 173892087 Jun  4 03:08 HITS.pool.root.1
[2025-06-04 03:10:01] -rw------- 1 boincer umatlas    747520 Jun  4 03:10 result.tar.gz
03:10:03 (28827): run_atlas exited; CPU time 39667.885942
03:10:03 (28827): called boinc_finish(0)

</stderr_txt>
]]>

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