Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:41:58 (21741): wrapper (7.7.26015): starting
16:41:58 (21741): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 16:41:58] Arguments: --nthreads 8
[2025-06-04 16:41:58] Threads: 8
[2025-06-04 16:41:58] Checking for CVMFS
[2025-06-04 16:41:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 16:41:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 16:41:59] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 16:42:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 16:42:00] 2.11.2.0 31726 33341 89856 146782 2 50 16098510 25165825 4139 130560 0 17314810 99.753 20736714 1989 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 16:42:00] CVMFS is ok
[2025-06-04 16:42:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 16:42:00] Checking for apptainer binary...
[2025-06-04 16:42:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 16:42:00] Running /usr/bin/apptainer --version
[2025-06-04 16:42:00] apptainer version 1.3.2-1.el7
[2025-06-04 16:42:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 16:54:08] cg-vwn427.simple-grid.lan
[2025-06-04 16:54:08] apptainer works
[2025-06-04 16:54:08] Set ATHENA_PROC_NUMBER=8
[2025-06-04 16:54:08] Set ATHENA_CORE_NUMBER=8
[2025-06-04 16:54:08] Starting ATLAS job with PandaID=6678245494
[2025-06-04 16:54:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 21:11:03]  *** The last 200 lines of the pilot log: ***
[2025-06-04 21:11:03] 2025-06-04 18:58:01,242 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6678245494/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 21:11:03] 2025-06-04 18:58:01,243 | INFO     | extracted standard info from prmon json
[2025-06-04 21:11:03] 2025-06-04 18:58:01,243 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 21:11:03] 2025-06-04 18:58:01,243 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 21:11:03] 2025-06-04 18:58:01,244 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 21:11:03] 2025-06-04 18:58:01,244 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 21:11:03] 2025-06-04 18:58:01,249 | INFO     | fitting pss+swap vs Time
[2025-06-04 21:11:03] 2025-06-04 18:58:01,250 | INFO     | sum of square deviations: 4127772278.0
[2025-06-04 21:11:03] 2025-06-04 18:58:01,251 | INFO     | sum of deviations: -4221501949.9999943
[2025-06-04 21:11:03] 2025-06-04 18:58:01,252 | INFO     | mean x: 1749056153.0
[2025-06-04 21:11:03] 2025-06-04 18:58:01,252 | INFO     | mean y: 2487655.7172995782
[2025-06-04 21:11:03] 2025-06-04 18:58:01,252 | INFO     | -- intersect: 1791259773.767991
[2025-06-04 21:11:03] 2025-06-04 18:58:01,252 | INFO     | intersect: 1791259773.767991
[2025-06-04 21:11:03] 2025-06-04 18:58:01,252 | INFO     | chi2: 2.5486180411668613
[2025-06-04 21:11:03] 2025-06-04 18:58:01,253 | INFO     | sum of square deviations: 3871990738.0
[2025-06-04 21:11:03] 2025-06-04 18:58:01,261 | INFO     | sum of deviations: 11365020410.0
[2025-06-04 21:11:03] 2025-06-04 18:58:01,261 | INFO     | mean x: 1749056000.5
[2025-06-04 21:11:03] 2025-06-04 18:58:01,262 | INFO     | mean y: 2496788.8620689656
[2025-06-04 21:11:03] 2025-06-04 18:58:01,262 | INFO     | -- intersect: -5131311241.418263
[2025-06-04 21:11:03] 2025-06-04 18:58:01,262 | INFO     | intersect: -5131311241.418263
[2025-06-04 21:11:03] 2025-06-04 18:58:01,262 | INFO     | chi2: 1.7831809489355306
[2025-06-04 21:11:03] 2025-06-04 18:58:01,262 | INFO     | current chi2=1.7831809489355306 (change=30.0334173213685 %)
[2025-06-04 21:11:03] 2025-06-04 18:58:01,263 | INFO     | sum of square deviations: 3627000098.0
[2025-06-04 21:11:03] 2025-06-04 18:58:01,264 | INFO     | sum of deviations: 11015297161.999996
[2025-06-04 21:11:03] 2025-06-04 18:58:01,265 | INFO     | mean x: 1749055848.0
[2025-06-04 21:11:03] 2025-06-04 18:58:01,265 | INFO     | mean y: 2496571.140969163
[2025-06-04 21:11:03] 2025-06-04 18:58:01,265 | INFO     | -- intersect: -5309433232.576918
[2025-06-04 21:11:03] 2025-06-04 18:58:01,265 | INFO     | intersect: -5309433232.576918
[2025-06-04 21:11:03] 2025-06-04 18:58:01,265 | INFO     | chi2: 1.7837332746199934
[2025-06-04 21:11:03] 2025-06-04 18:58:01,265 | INFO     | current chi2=1.7837332746199934 (change=-0.03097418042698082 %)
[2025-06-04 21:11:03] 2025-06-04 18:58:01,266 | INFO     | right removable region: 226
[2025-06-04 21:11:03] 2025-06-04 18:58:01,266 | INFO     | sum of square deviations: 3871990738.0
[2025-06-04 21:11:03] 2025-06-04 18:58:01,268 | INFO     | sum of deviations: -44676983434.5
[2025-06-04 21:11:03] 2025-06-04 18:58:01,268 | INFO     | mean x: 1749056305.5
[2025-06-04 21:11:03] 2025-06-04 18:58:01,268 | INFO     | mean y: 2511581.202586207
[2025-06-04 21:11:03] 2025-06-04 18:58:01,268 | INFO     | -- intersect: 20184006030.539585
[2025-06-04 21:11:03] 2025-06-04 18:58:01,268 | INFO     | intersect: 20184006030.539585
[2025-06-04 21:11:03] 2025-06-04 18:58:01,269 | INFO     | chi2: 0.9564398931698221
[2025-06-04 21:11:03] 2025-06-04 18:58:01,269 | INFO     | current chi2=0.9564398931698221 (change=62.47221522720113 %)
[2025-06-04 21:11:03] 2025-06-04 18:58:01,269 | INFO     | sum of square deviations: 3627000098.0
[2025-06-04 21:11:03] 2025-06-04 18:58:01,271 | INFO     | sum of deviations: -40014567903.0
[2025-06-04 21:11:03] 2025-06-04 18:58:01,271 | INFO     | mean x: 1749056458.0
[2025-06-04 21:11:03] 2025-06-04 18:58:01,271 | INFO     | mean y: 2508654.629955947
[2025-06-04 21:11:03] 2025-06-04 18:58:01,271 | INFO     | -- intersect: 19298824208.47135
[2025-06-04 21:11:03] 2025-06-04 18:58:01,271 | INFO     | intersect: 19298824208.47135
[2025-06-04 21:11:03] 2025-06-04 18:58:01,272 | INFO     | chi2: 0.9428904839555174
[2025-06-04 21:11:03] 2025-06-04 18:58:01,272 | INFO     | current chi2=0.9428904839555174 (change=1.4166503625648026 %)
[2025-06-04 21:11:03] 2025-06-04 18:58:01,272 | INFO     | left removable region: 20
[2025-06-04 21:11:03] 2025-06-04 18:58:01,272 | INFO     | sum of square deviations: 2710627567.5
[2025-06-04 21:11:03] 2025-06-04 18:58:01,274 | INFO     | sum of deviations: -8717227570.000004
[2025-06-04 21:11:03] 2025-06-04 18:58:01,274 | INFO     | mean x: 1749056427.5
[2025-06-04 21:11:03] 2025-06-04 18:58:01,274 | INFO     | mean y: 2507835.7475728155
[2025-06-04 21:11:03] 2025-06-04 18:58:01,274 | INFO     | -- intersect: 5627376074.415596
[2025-06-04 21:11:03] 2025-06-04 18:58:01,274 | INFO     | intersect: 5627376074.415596
[2025-06-04 21:11:03] 2025-06-04 18:58:01,275 | INFO     | chi2: 0.09408133041127589
[2025-06-04 21:11:03] 2025-06-04 18:58:01,275 | INFO     | -- intersect: 5627376074.415596
[2025-06-04 21:11:03] 2025-06-04 18:58:01,275 | INFO     | current memory leak: -3.22 B/s (using 206 data points, chi2=0.09)
[2025-06-04 21:11:03] 2025-06-04 18:58:01,276 | INFO     | ..............................
[2025-06-04 21:11:03] 2025-06-04 18:58:01,276 | INFO     | . Timing measurements:
[2025-06-04 21:11:03] 2025-06-04 18:58:01,276 | INFO     | . get job = 0 s
[2025-06-04 21:11:03] 2025-06-04 18:58:01,276 | INFO     | . initial setup = 2 s
[2025-06-04 21:11:03] 2025-06-04 18:58:01,276 | INFO     | . payload setup = 17 s
[2025-06-04 21:11:03] 2025-06-04 18:58:01,276 | INFO     | . stage-in = 0 s
[2025-06-04 21:11:03] 2025-06-04 18:58:01,276 | INFO     | . payload execution = 14452 s
[2025-06-04 21:11:03] 2025-06-04 18:58:01,276 | INFO     | . stage-out = 4 s
[2025-06-04 21:11:03] 2025-06-04 18:58:01,277 | INFO     | . log creation = 1 s
[2025-06-04 21:11:03] 2025-06-04 18:58:01,277 | INFO     | ..............................
[2025-06-04 21:11:03] 2025-06-04 18:58:01,949 | INFO     | 
[2025-06-04 21:11:03] 2025-06-04 18:58:01,950 | INFO     | job summary report
[2025-06-04 21:11:03] 2025-06-04 18:58:01,950 | INFO     | --------------------------------------------------
[2025-06-04 21:11:03] 2025-06-04 18:58:01,950 | INFO     | PanDA job id: 6678245494
[2025-06-04 21:11:03] 2025-06-04 18:58:01,950 | INFO     | task id: 45006595
[2025-06-04 21:11:03] 2025-06-04 18:58:01,950 | INFO     | errors: (none)
[2025-06-04 21:11:03] 2025-06-04 18:58:01,950 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 21:11:03] 2025-06-04 18:58:01,950 | INFO     | pilot state: finished 
[2025-06-04 21:11:03] 2025-06-04 18:58:01,950 | INFO     | transexitcode: 0
[2025-06-04 21:11:03] 2025-06-04 18:58:01,950 | INFO     | exeerrorcode: 0
[2025-06-04 21:11:03] 2025-06-04 18:58:01,951 | INFO     | exeerrordiag: 
[2025-06-04 21:11:03] 2025-06-04 18:58:01,951 | INFO     | exitcode: 0
[2025-06-04 21:11:03] 2025-06-04 18:58:01,951 | INFO     | exitmsg: OK
[2025-06-04 21:11:03] 2025-06-04 18:58:01,951 | INFO     | cpuconsumptiontime: 54088 s
[2025-06-04 21:11:03] 2025-06-04 18:58:01,951 | INFO     | nevents: 400
[2025-06-04 21:11:03] 2025-06-04 18:58:01,951 | INFO     | neventsw: 0
[2025-06-04 21:11:03] 2025-06-04 18:58:01,951 | INFO     | pid: 9873
[2025-06-04 21:11:03] 2025-06-04 18:58:01,951 | INFO     | pgrp: 9873
[2025-06-04 21:11:03] 2025-06-04 18:58:01,951 | INFO     | corecount: 8
[2025-06-04 21:11:03] 2025-06-04 18:58:01,951 | INFO     | event service: False
[2025-06-04 21:11:03] 2025-06-04 18:58:01,951 | INFO     | sizes: {0: 2397172, 1: 2397371, 12: 2397605, 23: 2397605, 14473: 2427673, 14474: 2427672, 14479: 2436799, 14482: 2436855, 14566: 2437025}
[2025-06-04 21:11:03] 2025-06-04 18:58:01,951 | INFO     | --------------------------------------------------
[2025-06-04 21:11:03] 2025-06-04 18:58:01,951 | INFO     | 
[2025-06-04 21:11:03] 2025-06-04 18:58:01,952 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-06-04 21:11:03] 2025-06-04 18:58:02,423 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,424 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,424 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,424 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,424 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,424 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,424 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,424 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,424 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,424 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,424 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,424 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,424 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,425 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,425 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,425 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,425 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,425 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 21:11:03] 2025-06-04 18:58:02,425 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,425 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 21:11:03] 2025-06-04 18:58:02,425 | INFO     | job 6678245494 has completed (purged errors)
[2025-06-04 21:11:03] 2025-06-04 18:58:02,425 | INFO     | overall cleanup function is called
[2025-06-04 21:11:03] 2025-06-04 18:58:03,434 | INFO     | --- collectZombieJob: --- 10, [9873]
[2025-06-04 21:11:03] 2025-06-04 18:58:03,435 | INFO     | zombie collector waiting for pid 9873
[2025-06-04 21:11:03] 2025-06-04 18:58:03,435 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 21:11:03] 2025-06-04 18:58:03,435 | INFO     | collected zombie processes
[2025-06-04 21:11:03] 2025-06-04 18:58:03,435 | INFO     | will attempt to kill all subprocesses of pid=9873
[2025-06-04 21:11:03] 2025-06-04 18:58:03,561 | INFO     | process IDs to be killed: [9873] (in reverse order)
[2025-06-04 21:11:03] 2025-06-04 18:58:04,346 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 21:11:03] 2025-06-04 18:58:04,346 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 21:11:03] 2025-06-04 18:58:04,350 | INFO     | did not find any defunct processes belonging to 9873
[2025-06-04 21:11:03] 2025-06-04 18:58:04,353 | INFO     | did not find any defunct processes belonging to 9873
[2025-06-04 21:11:03] 2025-06-04 18:58:04,354 | INFO     | ready for new job
[2025-06-04 21:11:03] 2025-06-04 18:58:04,354 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 21:11:03] 2025-06-04 18:58:04,356 | INFO     | **************************************
[2025-06-04 21:11:03] 2025-06-04 18:58:04,356 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 21:11:03] 2025-06-04 18:58:04,356 | INFO     | **************************************
[2025-06-04 21:11:03] 2025-06-04 18:58:04,356 | INFO     | 
[2025-06-04 21:11:03] 2025-06-04 18:58:04,357 | INFO     | pilot is running in a VM
[2025-06-04 21:11:03] 2025-06-04 18:58:04,357 | INFO     | architecture information:
[2025-06-04 21:11:03] 2025-06-04 18:58:04,366 | INFO     | executing command: cat /etc/os-release
[2025-06-04 21:11:03] 2025-06-04 18:58:04,673 | INFO     | cat /etc/os-release:
[2025-06-04 21:11:03] NAME="CentOS Linux"
[2025-06-04 21:11:03] VERSION="7 (Core)"
[2025-06-04 21:11:03] ID="centos"
[2025-06-04 21:11:03] ID_LIKE="rhel fedora"
[2025-06-04 21:11:03] VERSION_ID="7"
[2025-06-04 21:11:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 21:11:03] ANSI_COLOR="0;31"
[2025-06-04 21:11:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 21:11:03] HOME_URL="https://www.centos.org/"
[2025-06-04 21:11:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 21:11:03] 
[2025-06-04 21:11:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 21:11:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 21:11:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 21:11:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 21:11:03] 
[2025-06-04 21:11:03] 2025-06-04 18:58:04,673 | INFO     | **************************************
[2025-06-04 21:11:03] 2025-06-04 18:58:05,177 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-06-04 21:11:03] 2025-06-04 18:58:05,453 | INFO     | sufficient remaining disk space (496613982208 B)
[2025-06-04 21:11:03] 2025-06-04 18:58:05,454 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 21:11:03] 2025-06-04 18:58:05,454 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 21:11:03] 2025-06-04 18:58:05,454 | INFO     | update_server=False
[2025-06-04 21:11:03] 2025-06-04 18:58:05,454 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 21:11:03] 2025-06-04 18:58:05,456 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 21:11:03] 2025-06-04 18:58:05,456 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:11:03] 2025-06-04 18:58:05,456 | INFO     | aborting loop
[2025-06-04 21:11:03] 2025-06-04 18:58:05,459 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 21:11:03] 2025-06-04 18:58:05,549 | INFO     | all job control threads have been joined
[2025-06-04 21:11:03] 2025-06-04 18:58:05,898 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 21:11:03] 2025-06-04 18:58:05,898 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 21:11:03] 2025-06-04 18:58:05,898 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 21:11:03] 2025-06-04 18:58:05,951 | INFO     | all data control threads have been joined
[2025-06-04 21:11:03] 2025-06-04 18:58:06,462 | INFO     | [job] job monitor thread has finished
[2025-06-04 21:11:03] 2025-06-04 18:58:06,464 | INFO     | [job] retrieve thread has finished
[2025-06-04 21:11:03] 2025-06-04 18:58:06,496 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:11:03] 2025-06-04 18:58:06,497 | INFO     | all payload control threads have been joined
[2025-06-04 21:11:03] 2025-06-04 18:58:06,556 | INFO     | [job] control thread has finished
[2025-06-04 21:11:03] 2025-06-04 18:58:06,614 | INFO     | [payload] validate_post thread has finished
[2025-06-04 21:11:03] 2025-06-04 18:58:06,907 | INFO     | [data] copytool_in thread has finished
[2025-06-04 21:11:03] 2025-06-04 18:58:06,910 | INFO     | [job] validate thread has finished
[2025-06-04 21:11:03] 2025-06-04 18:58:06,958 | INFO     | [data] control thread has finished
[2025-06-04 21:11:03] 2025-06-04 18:58:07,012 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 21:11:03] 2025-06-04 18:58:07,338 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 21:11:03] 2025-06-04 18:58:07,467 | INFO     | [data] copytool_out thread has finished
[2025-06-04 21:11:03] 2025-06-04 18:58:07,503 | INFO     | [job] queue monitor thread has finished
[2025-06-04 21:11:03] 2025-06-04 18:58:07,507 | INFO     | [payload] control thread has finished
[2025-06-04 21:11:03] 2025-06-04 18:58:07,838 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 21:11:03] 2025-06-04 18:58:07,841 | INFO     | [payload] failed_post thread has finished
[2025-06-04 21:11:03] 2025-06-04 18:58:07,891 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 21:11:03] 2025-06-04 18:58:09,465 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 21:11:03] 2025-06-04 18:58:10,000 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140627849451328)>', '<ExcThread(monitor, started 140627387852544)>']
[2025-06-04 21:11:03] 2025-06-04 18:58:10,927 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 21:11:03] 2025-06-04 18:58:10,928 | INFO     | [monitor] control thread has ended
[2025-06-04 21:11:03] 2025-06-04 18:58:15,026 | INFO     | all workflow threads have been joined
[2025-06-04 21:11:03] 2025-06-04 18:58:15,026 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 21:11:03] 2025-06-04 18:58:15,026 | INFO     | traces error code: 0
[2025-06-04 21:11:03] 2025-06-04 18:58:15,026 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 21:11:03] 2025-06-04 18:58:15,377 [wrapper] ==== pilot stdout END ====
[2025-06-04 21:11:03] 2025-06-04 18:58:15,526 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 21:11:03] 2025-06-04 18:58:15,606 [wrapper] pilotpid: 1269
[2025-06-04 21:11:03] 2025-06-04 18:58:15,670 [wrapper] Pilot exit status: 0
[2025-06-04 21:11:03] 2025-06-04 18:58:16,090 [wrapper] pandaids: 6678245494
[2025-06-04 21:11:03] 2025-06-04 18:58:16,806 [wrapper] cleanup supervisor_pilot 20227 1270
[2025-06-04 21:11:03] 2025-06-04 18:58:16,878 [wrapper] Test setup, not cleaning
[2025-06-04 21:11:03] 2025-06-04 18:58:16,961 [wrapper] apfmon messages muted
[2025-06-04 21:11:03] 2025-06-04 18:58:17,025 [wrapper] ==== wrapper stdout END ====
[2025-06-04 21:11:03] 2025-06-04 18:58:17,078 [wrapper] ==== wrapper stderr END ====
[2025-06-04 21:11:03]  *** Error codes and diagnostics ***
[2025-06-04 21:11:03]     "exeErrorCode": 0,
[2025-06-04 21:11:03]     "exeErrorDiag": "",
[2025-06-04 21:11:03]     "pilotErrorCode": 0,
[2025-06-04 21:11:03]     "pilotErrorDiag": "",
[2025-06-04 21:11:03]  *** Listing of results directory ***
[2025-06-04 21:11:03] total 397872
[2025-06-04 21:11:03] -rw-r--r--. 1 boinc boinc    495897 Jun  4 02:59 pilot3.tar.gz
[2025-06-04 21:11:03] -rw-r--r--. 1 boinc boinc      5111 Jun  4 03:08 queuedata.json
[2025-06-04 21:11:03] -rwx------. 1 boinc boinc     37140 Jun  4 03:09 runpilot2-wrapper.sh
[2025-06-04 21:11:03] -rw-r--r--. 1 boinc boinc       100 Jun  4 16:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 21:11:03] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 16:41 run_atlas
[2025-06-04 21:11:03] -rw-r--r--. 1 boinc boinc       105 Jun  4 16:41 job.xml
[2025-06-04 21:11:03] -rw-r--r--. 1 boinc boinc      6392 Jun  4 16:41 init_data.xml
[2025-06-04 21:11:03] -rw-r--r--. 2 boinc boinc 214121118 Jun  4 16:41 EVNT.45006593._001992.pool.root.1
[2025-06-04 21:11:03] -rw-r--r--. 2 boinc boinc     15093 Jun  4 16:41 start_atlas.sh
[2025-06-04 21:11:03] drwxrwx--x. 2 boinc boinc        68 Jun  4 16:41 shared
[2025-06-04 21:11:03] -rw-r--r--. 2 boinc boinc    508883 Jun  4 16:41 input.tar.gz
[2025-06-04 21:11:03] -rw-r--r--. 1 boinc boinc         0 Jun  4 16:41 boinc_lockfile
[2025-06-04 21:11:03] -rw-r--r--. 1 boinc boinc      2525 Jun  4 16:54 pandaJob.out
[2025-06-04 21:11:03] -rw-------. 1 boinc boinc    987207 Jun  4 16:54 agis_schedconf.cvmfs.json
[2025-06-04 21:11:03] drwx------. 4 boinc boinc      4096 Jun  4 16:54 pilot3
[2025-06-04 21:11:03] -rw-------. 1 boinc boinc 186159307 Jun  4 20:55 HITS.45006595._049693.pool.root.1
[2025-06-04 21:11:03] -rw-r--r--. 1 boinc boinc       531 Jun  4 20:55 boinc_task_state.xml
[2025-06-04 21:11:03] -rw-------. 1 boinc boinc      1018 Jun  4 20:56 memory_monitor_summary.json
[2025-06-04 21:11:03] -rw-------. 1 boinc boinc   1598969 Jun  4 20:56 agis_ddmendpoints.agis.ALL.json
[2025-06-04 21:11:03] -rw-------. 1 boinc boinc    400649 Jun  4 20:56 log.45006595._049693.job.log.tgz.1
[2025-06-04 21:11:03] -rw-------. 1 boinc boinc        95 Jun  4 20:57 pilot_heartbeat.json
[2025-06-04 21:11:03] -rw-------. 1 boinc boinc      7689 Jun  4 20:58 heartbeat.json
[2025-06-04 21:11:03] -rw-------. 1 boinc boinc      4417 Jun  4 20:58 pilotlog.txt
[2025-06-04 21:11:03] -rw-------. 1 boinc boinc   1257967 Jun  4 20:58 log.45006595._049693.job.log.1
[2025-06-04 21:11:03] -rw-------. 1 boinc boinc       357 Jun  4 20:58 output.list
[2025-06-04 21:11:03] -rw-r--r--. 1 boinc boinc       620 Jun  4 20:58 runtime_log
[2025-06-04 21:11:03] -rw-------. 1 boinc boinc   1679360 Jun  4 20:58 result.tar.gz
[2025-06-04 21:11:03] -rw-r--r--. 1 boinc boinc      8673 Jun  4 20:58 runtime_log.err
[2025-06-04 21:11:03] -rw-------. 1 boinc boinc       657 Jun  4 20:58 qdTMDmIorg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKkmKDmNF2dZn.diag
[2025-06-04 21:11:03] -rw-r--r--. 1 boinc boinc      8192 Jun  4 21:11 boinc_mmap_file
[2025-06-04 21:11:03] -rw-r--r--. 1 boinc boinc        28 Jun  4 21:11 wrapper_checkpoint.txt
[2025-06-04 21:11:03] -rw-r--r--. 1 boinc boinc     20494 Jun  4 21:11 stderr.txt
[2025-06-04 21:11:03] HITS file was successfully produced:
[2025-06-04 21:11:03] -rw-------. 1 boinc boinc 186159307 Jun  4 20:55 shared/HITS.pool.root.1
[2025-06-04 21:11:03]  *** Contents of shared directory: ***
[2025-06-04 21:11:03] total 393060
[2025-06-04 21:11:03] -rw-r--r--. 2 boinc boinc 214121118 Jun  4 16:41 ATLAS.root_0
[2025-06-04 21:11:03] -rw-r--r--. 2 boinc boinc     15093 Jun  4 16:41 start_atlas.sh
[2025-06-04 21:11:03] -rw-r--r--. 2 boinc boinc    508883 Jun  4 16:41 input.tar.gz
[2025-06-04 21:11:03] -rw-------. 1 boinc boinc 186159307 Jun  4 20:55 HITS.pool.root.1
[2025-06-04 21:11:03] -rw-------. 1 boinc boinc   1679360 Jun  4 20:58 result.tar.gz
21:11:05 (21741): run_atlas exited; CPU time 54278.132856
21:11:05 (21741): called boinc_finish(0)

</stderr_txt>
]]>

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