Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-05 22:59:01 (3060): Detected: vboxwrapper 26206
2025-06-05 22:59:01 (3060): Detected: BOINC client v8.0.2
2025-06-05 22:59:02 (3060): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-06-05 22:59:02 (3060): Successfully copied 'init_data.xml' to the shared directory.
2025-06-05 22:59:03 (3060): Create VM. (boinc_7c53e1280179de67, slot#1)
2025-06-05 22:59:03 (3060): Setting Memory Size for VM. (4800MB)
2025-06-05 22:59:03 (3060): Setting CPU Count for VM. (8)
2025-06-05 22:59:04 (3060): Setting Chipset Options for VM.
2025-06-05 22:59:04 (3060): Setting Graphics Controller Options for VM.
2025-06-05 22:59:04 (3060): Setting Boot Options for VM.
2025-06-05 22:59:05 (3060): Setting Network Configuration for NAT.
2025-06-05 22:59:05 (3060): Enabling VM Network Access.
2025-06-05 22:59:05 (3060): Disabling USB Support for VM.
2025-06-05 22:59:05 (3060): Disabling COM Port Support for VM.
2025-06-05 22:59:06 (3060): Disabling LPT Port Support for VM.
2025-06-05 22:59:06 (3060): Disabling Audio Support for VM.
2025-06-05 22:59:06 (3060): Disabling Clipboard Support for VM.
2025-06-05 22:59:06 (3060): Disabling Drag and Drop Support for VM.
2025-06-05 22:59:07 (3060): Adding storage controller(s) to VM.
2025-06-05 22:59:07 (3060): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-05 22:59:10 (3060): Adding VirtualBox Guest Additions to VM.
2025-06-05 22:59:10 (3060): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-05 22:59:10 (3060): forwarding host port 62958 to guest port 80
2025-06-05 22:59:11 (3060): Enabling remote desktop for VM.
2025-06-05 22:59:11 (3060): Required extension pack not installed, remote desktop not enabled.
2025-06-05 22:59:11 (3060): Enabling shared directory for VM.
2025-06-05 22:59:11 (3060): Starting VM using VBoxManage interface. (boinc_7c53e1280179de67, slot#1)
2025-06-05 22:59:16 (3060): Successfully started VM. (PID = '23368')
2025-06-05 22:59:16 (3060): Reporting VM Process ID to BOINC.
2025-06-05 22:59:16 (3060): Guest Log: BIOS: VirtualBox 7.0.6
2025-06-05 22:59:16 (3060): Guest Log: CPUID EDX: 0x178bfbff
2025-06-05 22:59:16 (3060): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-05 22:59:16 (3060): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-05 22:59:16 (3060): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-05 22:59:16 (3060): Detected: Web Application Enabled (http://localhost:62958)
2025-06-05 22:59:16 (3060): Preference change detected
2025-06-05 22:59:16 (3060): Setting CPU throttle for VM. (100%)
2025-06-05 22:59:16 (3060): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-05 22:59:18 (3060): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-05 22:59:18 (3060): Guest Log: BIOS: Booting from Hard Disk...
2025-06-05 22:59:21 (3060): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-05 22:59:21 (3060): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-05 22:59:21 (3060): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-05 22:59:26 (3060): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-05 22:59:26 (3060): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-05 22:59:29 (3060): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-05 22:59:29 (3060): Guest Log: 00:00:00.000080 main     Log opened 2025-06-05T22:59:27.069735000Z
2025-06-05 22:59:29 (3060): Guest Log: 00:00:00.000141 main     OS Product: Linux
2025-06-05 22:59:29 (3060): Guest Log: 00:00:00.000165 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-05 22:59:29 (3060): Guest Log: 00:00:00.000184 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-05 22:59:29 (3060): Guest Log: 00:00:00.000201 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-05 22:59:29 (3060): Guest Log: 00:00:00.000201 main     Process ID: 1364
2025-06-05 22:59:29 (3060): Guest Log: 00:00:00.000202 main     Package type: LINUX_64BITS_GENERIC
2025-06-05 22:59:29 (3060): Guest Log: 00:00:00.000647 main     5.2.32 r132073 started. Verbose level = 0
2025-06-05 22:59:29 (3060): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-05 22:59:29 (3060): Guest Log: [INFO] Mounting shared directory
2025-06-05 22:59:29 (3060): Guest Log: [INFO] Checking for init_data.xml
2025-06-05 22:59:31 (3060): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-05 22:59:31 (3060): Guest Log: [INFO] Detected branch: prod
2025-06-05 22:59:31 (3060): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-05 22:59:31 (3060): Guest Log: Copying input files
2025-06-05 22:59:32 (3060): Guest Log: Copied input files into RunAtlas.
2025-06-05 22:59:32 (3060): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-05 22:59:32 (3060): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-05 22:59:32 (3060): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-05 22:59:32 (3060): Guest Log: Further information can be found at the LHC@home message board.
2025-06-05 22:59:39 (3060): Guest Log: 00:00:10.009117 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 982 195 000ns (GuestNow=1 749 157 179 088 765 000 ns GuestLast=1 749 164 367 070 960 000 ns fSetTimeLastLoop=true )
2025-06-05 22:59:40 (3060): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-05 22:59:40 (3060): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-05 22:59:40 (3060): Guest Log: 2.6.3.0 1640 0 30168 146831 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-05 22:59:40 (3060): Guest Log: copied the webapp to /var/www
2025-06-05 22:59:40 (3060): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-05 22:59:40 (3060): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-05 22:59:40 (3060): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-05 22:59:40 (3060): Guest Log:  *** Starting ATLAS job. (PandaID=6678245583 taskID=45006595) ***
2025-06-05 23:52:54 (3060): Guest Log:  *** Job finished ***
2025-06-05 23:52:54 (3060): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:43,104 | INFO     | [data] queue_monitor thread has finished
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:44,292 | INFO     | job.realtimelogging is not enabled
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:45,294 | INFO     | [payload] run_realtimelog thread has finished
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:47,158 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139847972816704)>', '<ExcThread(monitor, started 139846853048064)>']
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:47,426 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:47,427 | INFO     | [monitor] control thread has ended
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:52,164 | INFO     | all workflow threads have been joined
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:52,164 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:52,164 | INFO     | traces error code: 0
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:52,164 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:52,206 [wrapper] ==== pilot stdout END ====
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:52,209 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:52,212 [wrapper] pilotpid: 5966
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:52,215 [wrapper] Pilot exit status: 0
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:52,255 [wrapper] pandaids: 6678245583
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:52,274 [wrapper] cleanup supervisor_pilot 30905 5967
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:52,277 [wrapper] Test setup, not cleaning
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:52,281 [wrapper] apfmon messages muted
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:52,284 [wrapper] ==== wrapper stdout END ====
2025-06-05 23:52:54 (3060): Guest Log: 2025-06-05 21:52:52,286 [wrapper] ==== wrapper stderr END ====
2025-06-05 23:52:54 (3060): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 23:52:54 (3060): Guest Log:     "exeErrorCode": 0,
2025-06-05 23:52:54 (3060): Guest Log:     "exeErrorDiag": "",
2025-06-05 23:52:54 (3060): Guest Log:     "pilotErrorCode": 0,
2025-06-05 23:52:54 (3060): Guest Log:     "pilotErrorDiag": "",
2025-06-05 23:52:54 (3060): Guest Log:  *** Listing of results directory ***
2025-06-05 23:52:54 (3060): Guest Log: total 181040
2025-06-05 23:52:54 (3060): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  4 00:59 pilot3.tar.gz
2025-06-05 23:52:54 (3060): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 01:11 queuedata.json
2025-06-05 23:52:54 (3060): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 01:12 runpilot2-wrapper.sh
2025-06-05 23:52:54 (3060): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  5 20:59 start_atlas.sh
2025-06-05 23:52:54 (3060): Guest Log: -rwxr-xr-x. 1 atlas atlas    508881 Jun  5 20:59 input.tar.gz
2025-06-05 23:52:54 (3060): Guest Log: -rwxr-xr-x. 1 atlas atlas      9240 Jun  5 20:59 init_data.xml
2025-06-05 23:52:54 (3060): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  5 20:59 EVNT.45006593._001996.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 23:52:54 (3060): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  5 20:59 pandaJob.out
2025-06-05 23:52:54 (3060): Guest Log: -rw-------. 1 atlas atlas    987599 Jun  5 20:59 agis_schedconf.cvmfs.json
2025-06-05 23:52:54 (3060): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  5 20:59 agis_ddmendpoints.agis.ALL.json
2025-06-05 23:52:54 (3060): Guest Log: drwx------. 4 atlas atlas      4096 Jun  5 21:00 pilot3
2025-06-05 23:52:54 (3060): Guest Log: -rw-------. 1 atlas atlas 180443864 Jun  5 21:51 HITS.45006595._049782.pool.root.1
2025-06-05 23:52:54 (3060): Guest Log: -rw-------. 1 atlas atlas      1026 Jun  5 21:52 memory_monitor_summary.json
2025-06-05 23:52:54 (3060): Guest Log: -rw-------. 1 atlas atlas    282978 Jun  5 21:52 log.45006595._049782.job.log.tgz.1
2025-06-05 23:52:54 (3060): Guest Log: -rw-------. 1 atlas atlas        95 Jun  5 21:52 pilot_heartbeat.json
2025-06-05 23:52:54 (3060): Guest Log: -rw-------. 1 atlas atlas      7701 Jun  5 21:52 heartbeat.json
2025-06-05 23:52:54 (3060): Guest Log: -rw-------. 1 atlas atlas      4485 Jun  5 21:52 pilotlog.txt
2025-06-05 23:52:54 (3060): Guest Log: -rw-------. 1 atlas atlas    305697 Jun  5 21:52 log.45006595._049782.job.log.1
2025-06-05 23:52:54 (3060): Guest Log: -rw-------. 1 atlas atlas       357 Jun  5 21:52 output.list
2025-06-05 23:52:54 (3060): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  5 21:52 runtime_log
2025-06-05 23:52:54 (3060): Guest Log: -rw-------. 1 atlas atlas    604160 Jun  5 21:52 result.tar.gz
2025-06-05 23:52:54 (3060): Guest Log: -rw-------. 1 atlas atlas       649 Jun  5 21:52 XvhNDmLrrg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmFSaKDmpsWnDm.diag
2025-06-05 23:52:54 (3060): Guest Log: -rw-r--r--. 1 atlas atlas      8586 Jun  5 21:52 runtime_log.err
2025-06-05 23:52:54 (3060): Guest Log: Looking for outputfile HITS.45006595._049782.pool.root.1
2025-06-05 23:52:54 (3060): Guest Log: HITS file was successfully produced
2025-06-05 23:52:54 (3060): Guest Log: -rw-------. 1 atlas atlas 180443864 Jun  5 21:51 /home/atlas/RunAtlas/HITS.45006595._049782.pool.root.1
2025-06-05 23:52:54 (3060): Guest Log: Successfully finished the ATLAS job!
2025-06-05 23:52:54 (3060): Guest Log: Copying the results back to the shared directory!
2025-06-05 23:52:54 (3060): Guest Log:  *** Contents of shared directory: ***
2025-06-05 23:52:54 (3060): Guest Log: total 388956
2025-06-05 23:52:54 (3060): Guest Log: -rwxrwxrwx. 1 root root 216695903 Jun  5 20:59 ATLAS.root_0
2025-06-05 23:52:54 (3060): Guest Log: -rwxrwxrwx. 1 root root 180443864 Jun  5  2025 HITS.pool.root.1
2025-06-05 23:52:54 (3060): Guest Log: -rwxrwxrwx. 1 root root      9240 Jun  5 20:59 init_data.xml
2025-06-05 23:52:54 (3060): Guest Log: -rwxrwxrwx. 1 root root    508881 Jun  4 06:00 input.tar.gz
2025-06-05 23:52:54 (3060): Guest Log: -rwxrwxrwx. 1 root root    604160 Jun  5  2025 result.tar.gz
2025-06-05 23:52:54 (3060): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 06:00 start_atlas.sh
2025-06-05 23:52:54 (3060): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 23:52:54 (3060): VM Completion File Detected.
2025-06-05 23:52:54 (3060): Powering off VM.
2025-06-05 23:52:55 (3060): Successfully stopped VM.
2025-06-05 23:52:55 (3060): Deregistering VM. (boinc_7c53e1280179de67, slot#1)
2025-06-05 23:52:55 (3060): Removing network bandwidth throttle group from VM.
2025-06-05 23:52:55 (3060): Removing VM from VirtualBox.
23:53:01 (3060): called boinc_finish(0)

</stderr_txt>
]]>

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