Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-05 21:08:51 (13468): Detected: vboxwrapper 26206
2025-06-05 21:08:51 (13468): Detected: BOINC client v8.0.2
2025-06-05 21:08:53 (13468): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-06-05 21:08:53 (13468): Successfully copied 'init_data.xml' to the shared directory.
2025-06-05 21:08:54 (13468): Create VM. (boinc_45f66e96c37deec8, slot#3)
2025-06-05 21:08:54 (13468): Setting Memory Size for VM. (4800MB)
2025-06-05 21:08:54 (13468): Setting CPU Count for VM. (8)
2025-06-05 21:08:55 (13468): Setting Chipset Options for VM.
2025-06-05 21:08:55 (13468): Setting Graphics Controller Options for VM.
2025-06-05 21:08:55 (13468): Setting Boot Options for VM.
2025-06-05 21:08:55 (13468): Setting Network Configuration for NAT.
2025-06-05 21:08:56 (13468): Enabling VM Network Access.
2025-06-05 21:08:56 (13468): Disabling USB Support for VM.
2025-06-05 21:08:56 (13468): Disabling COM Port Support for VM.
2025-06-05 21:08:56 (13468): Disabling LPT Port Support for VM.
2025-06-05 21:08:57 (13468): Disabling Audio Support for VM.
2025-06-05 21:08:57 (13468): Disabling Clipboard Support for VM.
2025-06-05 21:08:57 (13468): Disabling Drag and Drop Support for VM.
2025-06-05 21:08:58 (13468): Adding storage controller(s) to VM.
2025-06-05 21:08:58 (13468): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-05 21:09:01 (13468): Adding VirtualBox Guest Additions to VM.
2025-06-05 21:09:01 (13468): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-05 21:09:01 (13468): forwarding host port 61465 to guest port 80
2025-06-05 21:09:01 (13468): Enabling remote desktop for VM.
2025-06-05 21:09:02 (13468): Required extension pack not installed, remote desktop not enabled.
2025-06-05 21:09:02 (13468): Enabling shared directory for VM.
2025-06-05 21:09:02 (13468): Starting VM using VBoxManage interface. (boinc_45f66e96c37deec8, slot#3)
2025-06-05 21:09:07 (13468): Successfully started VM. (PID = '27828')
2025-06-05 21:09:07 (13468): Reporting VM Process ID to BOINC.
2025-06-05 21:09:07 (13468): Guest Log: BIOS: VirtualBox 7.0.6
2025-06-05 21:09:07 (13468): Guest Log: CPUID EDX: 0x178bfbff
2025-06-05 21:09:07 (13468): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-05 21:09:07 (13468): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-05 21:09:07 (13468): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-05 21:09:07 (13468): Detected: Web Application Enabled (http://localhost:61465)
2025-06-05 21:09:07 (13468): Preference change detected
2025-06-05 21:09:07 (13468): Setting CPU throttle for VM. (100%)
2025-06-05 21:09:07 (13468): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-05 21:09:09 (13468): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-05 21:09:09 (13468): Guest Log: BIOS: Booting from Hard Disk...
2025-06-05 21:09:11 (13468): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-05 21:09:11 (13468): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-05 21:09:11 (13468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-05 21:09:16 (13468): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-05 21:09:16 (13468): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-05 21:09:20 (13468): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-05 21:09:20 (13468): Guest Log: 00:00:00.000186 main     Log opened 2025-06-05T21:09:17.911842000Z
2025-06-05 21:09:20 (13468): Guest Log: 00:00:00.000250 main     OS Product: Linux
2025-06-05 21:09:20 (13468): Guest Log: 00:00:00.000275 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-05 21:09:20 (13468): Guest Log: 00:00:00.000294 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-05 21:09:20 (13468): Guest Log: 00:00:00.000311 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-05 21:09:20 (13468): Guest Log: 00:00:00.000312 main     Process ID: 1366
2025-06-05 21:09:20 (13468): Guest Log: 00:00:00.000312 main     Package type: LINUX_64BITS_GENERIC
2025-06-05 21:09:20 (13468): Guest Log: 00:00:00.000784 main     5.2.32 r132073 started. Verbose level = 0
2025-06-05 21:09:20 (13468): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-05 21:09:20 (13468): Guest Log: [INFO] Mounting shared directory
2025-06-05 21:09:20 (13468): Guest Log: [INFO] Checking for init_data.xml
2025-06-05 21:09:27 (13468): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-05 21:09:27 (13468): Guest Log: [INFO] Detected branch: prod
2025-06-05 21:09:27 (13468): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-05 21:09:27 (13468): Guest Log: Copying input files
2025-06-05 21:09:28 (13468): Guest Log: Copied input files into RunAtlas.
2025-06-05 21:09:28 (13468): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-05 21:09:28 (13468): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-05 21:09:28 (13468): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-05 21:09:28 (13468): Guest Log: Further information can be found at the LHC@home message board.
2025-06-05 21:09:30 (13468): Guest Log: 00:00:10.004511 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 285 582 000ns (GuestNow=1 749 150 569 627 820 000 ns GuestLast=1 749 157 757 913 402 000 ns fSetTimeLastLoop=true )
2025-06-05 21:09:36 (13468): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-05 21:09:36 (13468): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-05 21:09:36 (13468): Guest Log: 2.6.3.0 1645 0 30164 146829 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-05 21:09:37 (13468): Guest Log: copied the webapp to /var/www
2025-06-05 21:09:37 (13468): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-05 21:09:37 (13468): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-05 21:09:37 (13468): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-05 21:09:37 (13468): Guest Log:  *** Starting ATLAS job. (PandaID=6678245541 taskID=45006595) ***
2025-06-05 22:06:20 (13468): Guest Log:  *** Job finished ***
2025-06-05 22:06:20 (13468): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:06,909 | INFO     | [data] copytool_out thread has finished
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:07,021 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:11,144 | INFO     | [data] queue_monitor thread has finished
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:12,427 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140112457860928)>', '<ExcThread(monitor, started 140111287150336)>']
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:12,990 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:12,990 | INFO     | [monitor] control thread has ended
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:17,453 | INFO     | all workflow threads have been joined
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:17,453 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:17,453 | INFO     | traces error code: 0
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:17,454 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:17,512 [wrapper] ==== pilot stdout END ====
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:17,516 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:17,519 [wrapper] pilotpid: 5976
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:17,522 [wrapper] Pilot exit status: 0
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:17,724 [wrapper] pandaids: 6678245541
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:17,747 [wrapper] cleanup supervisor_pilot 21626 5977
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:17,751 [wrapper] Test setup, not cleaning
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:17,756 [wrapper] apfmon messages muted
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:17,760 [wrapper] ==== wrapper stdout END ====
2025-06-05 22:06:20 (13468): Guest Log: 2025-06-05 20:06:17,764 [wrapper] ==== wrapper stderr END ====
2025-06-05 22:06:20 (13468): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 22:06:20 (13468): Guest Log:     "exeErrorCode": 0,
2025-06-05 22:06:20 (13468): Guest Log:     "exeErrorDiag": "",
2025-06-05 22:06:20 (13468): Guest Log:     "pilotErrorCode": 0,
2025-06-05 22:06:20 (13468): Guest Log:     "pilotErrorDiag": "",
2025-06-05 22:06:20 (13468): Guest Log:  *** Listing of results directory ***
2025-06-05 22:06:20 (13468): Guest Log: total 183920
2025-06-05 22:06:20 (13468): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  4 00:59 pilot3.tar.gz
2025-06-05 22:06:20 (13468): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 01:08 queuedata.json
2025-06-05 22:06:20 (13468): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 01:09 runpilot2-wrapper.sh
2025-06-05 22:06:20 (13468): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  5 19:09 start_atlas.sh
2025-06-05 22:06:20 (13468): Guest Log: -rwxr-xr-x. 1 atlas atlas    508887 Jun  5 19:09 input.tar.gz
2025-06-05 22:06:20 (13468): Guest Log: -rwxr-xr-x. 1 atlas atlas      9240 Jun  5 19:09 init_data.xml
2025-06-05 22:06:20 (13468): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  5 19:09 EVNT.45006593._001994.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 22:06:20 (13468): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  5 19:09 pandaJob.out
2025-06-05 22:06:20 (13468): Guest Log: -rw-------. 1 atlas atlas    987543 Jun  5 19:10 agis_schedconf.cvmfs.json
2025-06-05 22:06:20 (13468): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  5 19:10 agis_ddmendpoints.agis.ALL.json
2025-06-05 22:06:20 (13468): Guest Log: drwx------. 4 atlas atlas      4096 Jun  5 19:10 pilot3
2025-06-05 22:06:20 (13468): Guest Log: -rw-------. 1 atlas atlas 183331828 Jun  5 20:05 HITS.45006595._049740.pool.root.1
2025-06-05 22:06:20 (13468): Guest Log: -rw-------. 1 atlas atlas        95 Jun  5 20:05 pilot_heartbeat.json
2025-06-05 22:06:20 (13468): Guest Log: -rw-------. 1 atlas atlas      1024 Jun  5 20:05 memory_monitor_summary.json
2025-06-05 22:06:20 (13468): Guest Log: -rw-------. 1 atlas atlas    295781 Jun  5 20:05 log.45006595._049740.job.log.tgz.1
2025-06-05 22:06:20 (13468): Guest Log: -rw-------. 1 atlas atlas      7701 Jun  5 20:06 heartbeat.json
2025-06-05 22:06:20 (13468): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  5 20:06 pilotlog.txt
2025-06-05 22:06:20 (13468): Guest Log: -rw-------. 1 atlas atlas    323748 Jun  5 20:06 log.45006595._049740.job.log.1
2025-06-05 22:06:20 (13468): Guest Log: -rw-------. 1 atlas atlas       357 Jun  5 20:06 output.list
2025-06-05 22:06:20 (13468): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  5 20:06 runtime_log
2025-06-05 22:06:20 (13468): Guest Log: -rw-------. 1 atlas atlas    634880 Jun  5 20:06 result.tar.gz
2025-06-05 22:06:20 (13468): Guest Log: -rw-r--r--. 1 atlas atlas      8586 Jun  5 20:06 runtime_log.err
2025-06-05 22:06:20 (13468): Guest Log: -rw-------. 1 atlas atlas       649 Jun  5 20:06 L3WNDmIorg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3kmKDmYgKkXm.diag
2025-06-05 22:06:20 (13468): Guest Log: Looking for outputfile HITS.45006595._049740.pool.root.1
2025-06-05 22:06:20 (13468): Guest Log: HITS file was successfully produced
2025-06-05 22:06:20 (13468): Guest Log: -rw-------. 1 atlas atlas 183331828 Jun  5 20:05 /home/atlas/RunAtlas/HITS.45006595._049740.pool.root.1
2025-06-05 22:06:21 (13468): Guest Log: Successfully finished the ATLAS job!
2025-06-05 22:06:21 (13468): Guest Log: Copying the results back to the shared directory!
2025-06-05 22:06:21 (13468): Guest Log:  *** Contents of shared directory: ***
2025-06-05 22:06:21 (13468): Guest Log: total 389584
2025-06-05 22:06:21 (13468): Guest Log: -rwxrwxrwx. 1 root root 214421936 Jun  5 19:08 ATLAS.root_0
2025-06-05 22:06:21 (13468): Guest Log: -rwxrwxrwx. 1 root root 183331828 Jun  5  2025 HITS.pool.root.1
2025-06-05 22:06:21 (13468): Guest Log: -rwxrwxrwx. 1 root root      9240 Jun  5 19:08 init_data.xml
2025-06-05 22:06:21 (13468): Guest Log: -rwxrwxrwx. 1 root root    508887 Jun  4 05:59 input.tar.gz
2025-06-05 22:06:21 (13468): Guest Log: -rwxrwxrwx. 1 root root    634880 Jun  5  2025 result.tar.gz
2025-06-05 22:06:21 (13468): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 05:59 start_atlas.sh
2025-06-05 22:06:21 (13468): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 22:06:21 (13468): VM Completion File Detected.
2025-06-05 22:06:21 (13468): Powering off VM.
2025-06-05 22:06:21 (13468): Successfully stopped VM.
2025-06-05 22:06:21 (13468): Deregistering VM. (boinc_45f66e96c37deec8, slot#3)
2025-06-05 22:06:21 (13468): Removing network bandwidth throttle group from VM.
2025-06-05 22:06:22 (13468): Removing VM from VirtualBox.
22:06:27 (13468): called boinc_finish(0)

</stderr_txt>
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