Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-05 20:12:38 (16440): Detected: vboxwrapper 26206
2025-06-05 20:12:38 (16440): Detected: BOINC client v8.0.2
2025-06-05 20:12:39 (16440): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-06-05 20:12:39 (16440): Successfully copied 'init_data.xml' to the shared directory.
2025-06-05 20:12:40 (16440): Create VM. (boinc_3da380fa6c4eb466, slot#3)
2025-06-05 20:12:40 (16440): Setting Memory Size for VM. (4800MB)
2025-06-05 20:12:41 (16440): Setting CPU Count for VM. (8)
2025-06-05 20:12:41 (16440): Setting Chipset Options for VM.
2025-06-05 20:12:41 (16440): Setting Graphics Controller Options for VM.
2025-06-05 20:12:41 (16440): Setting Boot Options for VM.
2025-06-05 20:12:42 (16440): Setting Network Configuration for NAT.
2025-06-05 20:12:42 (16440): Enabling VM Network Access.
2025-06-05 20:12:42 (16440): Disabling USB Support for VM.
2025-06-05 20:12:42 (16440): Disabling COM Port Support for VM.
2025-06-05 20:12:43 (16440): Disabling LPT Port Support for VM.
2025-06-05 20:12:43 (16440): Disabling Audio Support for VM.
2025-06-05 20:12:43 (16440): Disabling Clipboard Support for VM.
2025-06-05 20:12:43 (16440): Disabling Drag and Drop Support for VM.
2025-06-05 20:12:44 (16440): Adding storage controller(s) to VM.
2025-06-05 20:12:44 (16440): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-05 20:12:47 (16440): Adding VirtualBox Guest Additions to VM.
2025-06-05 20:12:47 (16440): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-05 20:12:47 (16440): forwarding host port 60844 to guest port 80
2025-06-05 20:12:48 (16440): Enabling remote desktop for VM.
2025-06-05 20:12:48 (16440): Required extension pack not installed, remote desktop not enabled.
2025-06-05 20:12:48 (16440): Enabling shared directory for VM.
2025-06-05 20:12:48 (16440): Starting VM using VBoxManage interface. (boinc_3da380fa6c4eb466, slot#3)
2025-06-05 20:12:53 (16440): Successfully started VM. (PID = '29500')
2025-06-05 20:12:53 (16440): Reporting VM Process ID to BOINC.
2025-06-05 20:12:53 (16440): Guest Log: BIOS: VirtualBox 7.0.6
2025-06-05 20:12:53 (16440): Guest Log: CPUID EDX: 0x178bfbff
2025-06-05 20:12:53 (16440): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-05 20:12:53 (16440): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-05 20:12:53 (16440): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-05 20:12:53 (16440): Detected: Web Application Enabled (http://localhost:60844)
2025-06-05 20:12:53 (16440): Preference change detected
2025-06-05 20:12:53 (16440): Setting CPU throttle for VM. (100%)
2025-06-05 20:12:53 (16440): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-05 20:12:55 (16440): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-05 20:12:55 (16440): Guest Log: BIOS: Booting from Hard Disk...
2025-06-05 20:12:58 (16440): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-05 20:12:58 (16440): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-05 20:12:58 (16440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-05 20:13:02 (16440): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-05 20:13:02 (16440): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-05 20:13:06 (16440): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-05 20:13:06 (16440): Guest Log: 00:00:00.000089 main     Log opened 2025-06-05T20:13:04.907491000Z
2025-06-05 20:13:06 (16440): Guest Log: 00:00:00.000149 main     OS Product: Linux
2025-06-05 20:13:06 (16440): Guest Log: 00:00:00.000172 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-05 20:13:06 (16440): Guest Log: 00:00:00.000191 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-05 20:13:06 (16440): Guest Log: 00:00:00.000207 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-05 20:13:06 (16440): Guest Log: 00:00:00.000208 main     Process ID: 1366
2025-06-05 20:13:06 (16440): Guest Log: 00:00:00.000208 main     Package type: LINUX_64BITS_GENERIC
2025-06-05 20:13:06 (16440): Guest Log: 00:00:00.000595 main     5.2.32 r132073 started. Verbose level = 0
2025-06-05 20:13:06 (16440): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-05 20:13:06 (16440): Guest Log: [INFO] Mounting shared directory
2025-06-05 20:13:06 (16440): Guest Log: [INFO] Checking for init_data.xml
2025-06-05 20:13:08 (16440): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-05 20:13:08 (16440): Guest Log: [INFO] Detected branch: prod
2025-06-05 20:13:08 (16440): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-05 20:13:08 (16440): Guest Log: Copying input files
2025-06-05 20:13:09 (16440): Guest Log: Copied input files into RunAtlas.
2025-06-05 20:13:09 (16440): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-05 20:13:09 (16440): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-05 20:13:09 (16440): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-05 20:13:09 (16440): Guest Log: Further information can be found at the LHC@home message board.
2025-06-05 20:13:16 (16440): Guest Log: 00:00:10.004146 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 796 103 000ns (GuestNow=1 749 147 196 112 689 000 ns GuestLast=1 749 154 384 908 792 000 ns fSetTimeLastLoop=true )
2025-06-05 20:13:18 (16440): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-05 20:13:18 (16440): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-05 20:13:18 (16440): Guest Log: 2.6.3.0 1642 0 32032 146829 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-05 20:13:19 (16440): Guest Log: copied the webapp to /var/www
2025-06-05 20:13:19 (16440): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-05 20:13:19 (16440): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-05 20:13:19 (16440): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-05 20:13:19 (16440): Guest Log:  *** Starting ATLAS job. (PandaID=6678152383 taskID=45006595) ***
2025-06-05 21:08:40 (16440): Guest Log:  *** Job finished ***
2025-06-05 21:08:40 (16440): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:31,743 | INFO     | [job] validate thread has finished
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:31,891 | INFO     | [payload] failed_post thread has finished
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:33,353 | INFO     | [data] queue_monitor thread has finished
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:33,580 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140393572783936)>', '<ExcThread(monitor, started 140392548792064)>']
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:34,306 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:34,306 | INFO     | [monitor] control thread has ended
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:38,586 | INFO     | all workflow threads have been joined
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:38,586 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:38,586 | INFO     | traces error code: 0
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:38,586 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:38,636 [wrapper] ==== pilot stdout END ====
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:38,639 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:38,642 [wrapper] pilotpid: 5975
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:38,646 [wrapper] Pilot exit status: 0
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:38,754 [wrapper] pandaids: 6678152383
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:38,776 [wrapper] cleanup supervisor_pilot 21640 5976
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:38,780 [wrapper] Test setup, not cleaning
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:38,784 [wrapper] apfmon messages muted
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:38,788 [wrapper] ==== wrapper stdout END ====
2025-06-05 21:08:40 (16440): Guest Log: 2025-06-05 19:08:38,791 [wrapper] ==== wrapper stderr END ====
2025-06-05 21:08:40 (16440): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 21:08:40 (16440): Guest Log:     "exeErrorCode": 0,
2025-06-05 21:08:40 (16440): Guest Log:     "exeErrorDiag": "",
2025-06-05 21:08:40 (16440): Guest Log:     "pilotErrorCode": 0,
2025-06-05 21:08:40 (16440): Guest Log:     "pilotErrorDiag": "",
2025-06-05 21:08:40 (16440): Guest Log:  *** Listing of results directory ***
2025-06-05 21:08:40 (16440): Guest Log: total 177172
2025-06-05 21:08:40 (16440): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  3 21:57 pilot3.tar.gz
2025-06-05 21:08:40 (16440): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  3 22:33 queuedata.json
2025-06-05 21:08:40 (16440): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  3 22:33 runpilot2-wrapper.sh
2025-06-05 21:08:40 (16440): Guest Log: -rwxr-xr-x. 1 atlas atlas      9240 Jun  5 18:13 init_data.xml
2025-06-05 21:08:40 (16440): Guest Log: -rwxr-xr-x. 1 atlas atlas    508877 Jun  5 18:13 input.tar.gz
2025-06-05 21:08:40 (16440): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  5 18:13 start_atlas.sh
2025-06-05 21:08:40 (16440): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  5 18:13 EVNT.45006593._001891.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 21:08:40 (16440): Guest Log: -rw-r--r--. 1 atlas atlas      2524 Jun  5 18:13 pandaJob.out
2025-06-05 21:08:40 (16440): Guest Log: -rw-------. 1 atlas atlas    987543 Jun  5 18:13 agis_schedconf.cvmfs.json
2025-06-05 21:08:40 (16440): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  5 18:13 agis_ddmendpoints.agis.ALL.json
2025-06-05 21:08:40 (16440): Guest Log: drwx------. 4 atlas atlas      4096 Jun  5 18:13 pilot3
2025-06-05 21:08:40 (16440): Guest Log: -rw-------. 1 atlas atlas 176473116 Jun  5 19:08 HITS.45006595._047160.pool.root.1
2025-06-05 21:08:40 (16440): Guest Log: -rw-------. 1 atlas atlas      1024 Jun  5 19:08 memory_monitor_summary.json
2025-06-05 21:08:40 (16440): Guest Log: -rw-------. 1 atlas atlas        95 Jun  5 19:08 pilot_heartbeat.json
2025-06-05 21:08:40 (16440): Guest Log: -rw-------. 1 atlas atlas    274193 Jun  5 19:08 log.45006595._047160.job.log.tgz.1
2025-06-05 21:08:40 (16440): Guest Log: -rw-------. 1 atlas atlas      7699 Jun  5 19:08 heartbeat.json
2025-06-05 21:08:40 (16440): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  5 19:08 pilotlog.txt
2025-06-05 21:08:40 (16440): Guest Log: -rw-------. 1 atlas atlas    318665 Jun  5 19:08 log.45006595._047160.job.log.1
2025-06-05 21:08:40 (16440): Guest Log: -rw-------. 1 atlas atlas       357 Jun  5 19:08 output.list
2025-06-05 21:08:40 (16440): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  5 19:08 runtime_log
2025-06-05 21:08:40 (16440): Guest Log: -rw-------. 1 atlas atlas    614400 Jun  5 19:08 result.tar.gz
2025-06-05 21:08:40 (16440): Guest Log: -rw-------. 1 atlas atlas       649 Jun  5 19:08 y0EMDmMNpg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJNmKDmxaYRDn.diag
2025-06-05 21:08:40 (16440): Guest Log: -rw-r--r--. 1 atlas atlas      8586 Jun  5 19:08 runtime_log.err
2025-06-05 21:08:40 (16440): Guest Log: Looking for outputfile HITS.45006595._047160.pool.root.1
2025-06-05 21:08:40 (16440): Guest Log: HITS file was successfully produced
2025-06-05 21:08:40 (16440): Guest Log: -rw-------. 1 atlas atlas 176473116 Jun  5 19:08 /home/atlas/RunAtlas/HITS.45006595._047160.pool.root.1
2025-06-05 21:08:41 (16440): Guest Log: Successfully finished the ATLAS job!
2025-06-05 21:08:41 (16440): Guest Log: Copying the results back to the shared directory!
2025-06-05 21:08:41 (16440): Guest Log:  *** Contents of shared directory: ***
2025-06-05 21:08:41 (16440): Guest Log: total 383544
2025-06-05 21:08:41 (16440): Guest Log: -rwxrwxrwx. 1 root root 215114660 Jun  5 18:12 ATLAS.root_0
2025-06-05 21:08:41 (16440): Guest Log: -rwxrwxrwx. 1 root root 176473116 Jun  5  2025 HITS.pool.root.1
2025-06-05 21:08:41 (16440): Guest Log: -rwxrwxrwx. 1 root root      9240 Jun  5 18:12 init_data.xml
2025-06-05 21:08:41 (16440): Guest Log: -rwxrwxrwx. 1 root root    508877 Jun  4 06:00 input.tar.gz
2025-06-05 21:08:41 (16440): Guest Log: -rwxrwxrwx. 1 root root    614400 Jun  5  2025 result.tar.gz
2025-06-05 21:08:41 (16440): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 06:00 start_atlas.sh
2025-06-05 21:08:41 (16440): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 21:08:41 (16440): VM Completion File Detected.
2025-06-05 21:08:41 (16440): Powering off VM.
2025-06-05 21:08:42 (16440): Successfully stopped VM.
2025-06-05 21:08:42 (16440): Deregistering VM. (boinc_3da380fa6c4eb466, slot#3)
2025-06-05 21:08:42 (16440): Removing network bandwidth throttle group from VM.
2025-06-05 21:08:43 (16440): Removing VM from VirtualBox.
21:08:48 (16440): called boinc_finish(0)

</stderr_txt>
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