Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:49:54 (31194): wrapper (7.7.26015): starting
18:49:54 (31194): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 18:49:54] Arguments: --nthreads 8
[2025-06-04 18:49:54] Threads: 8
[2025-06-04 18:49:54] Checking for CVMFS
[2025-06-04 18:49:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 18:49:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 18:49:56] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 18:49:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 18:49:58] 2.11.2.0 12147 33469 99712 146788 3 16 24244093 25165825 3518 130560 0 17983610 99.721 20901790 2119 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 18:49:58] CVMFS is ok
[2025-06-04 18:49:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 18:49:58] Checking for apptainer binary...
[2025-06-04 18:49:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 18:49:58] Running /usr/bin/apptainer --version
[2025-06-04 18:49:58] apptainer version 1.3.2-1.el7
[2025-06-04 18:49:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 20:45:37] cg-vwn304.simple-grid.lan
[2025-06-04 20:45:37] apptainer works
[2025-06-04 20:45:37] Set ATHENA_PROC_NUMBER=8
[2025-06-04 20:45:37] Set ATHENA_CORE_NUMBER=8
[2025-06-04 20:45:37] Starting ATLAS job with PandaID=6678245441
[2025-06-04 20:45:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 02:28:44]  *** The last 200 lines of the pilot log: ***
[2025-06-05 02:28:44] 2025-06-04 22:41:13,889 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 02:28:44] 2025-06-04 22:41:13,890 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 02:28:44] 2025-06-04 22:41:13,890 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 02:28:44] 2025-06-04 22:41:13,890 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 02:28:44] 2025-06-04 22:41:13,895 | INFO     | fitting pss+swap vs Time
[2025-06-05 02:28:44] 2025-06-04 22:41:13,896 | INFO     | sum of square deviations: 3723716330.0
[2025-06-05 02:28:44] 2025-06-04 22:41:13,898 | INFO     | sum of deviations: -10539866334.000011
[2025-06-05 02:28:44] 2025-06-04 22:41:13,898 | INFO     | mean x: 1749069781.0
[2025-06-05 02:28:44] 2025-06-04 22:41:13,898 | INFO     | mean y: 2489434.4366812226
[2025-06-05 02:28:44] 2025-06-04 22:41:13,898 | INFO     | -- intersect: 4953178495.270344
[2025-06-05 02:28:44] 2025-06-04 22:41:13,898 | INFO     | intersect: 4953178495.270344
[2025-06-05 02:28:44] 2025-06-04 22:41:13,899 | INFO     | chi2: 2.446580200884263
[2025-06-05 02:28:44] 2025-06-04 22:41:13,899 | INFO     | sum of square deviations: 3485088600.0
[2025-06-05 02:28:44] 2025-06-04 22:41:13,901 | INFO     | sum of deviations: 4714836918.499999
[2025-06-05 02:28:44] 2025-06-04 22:41:13,901 | INFO     | mean x: 1749069628.5
[2025-06-05 02:28:44] 2025-06-04 22:41:13,901 | INFO     | mean y: 2499012.254464286
[2025-06-05 02:28:44] 2025-06-04 22:41:13,901 | INFO     | -- intersect: -2363747302.825984
[2025-06-05 02:28:44] 2025-06-04 22:41:13,901 | INFO     | intersect: -2363747302.825984
[2025-06-05 02:28:44] 2025-06-04 22:41:13,902 | INFO     | chi2: 1.6788769248839455
[2025-06-05 02:28:44] 2025-06-04 22:41:13,902 | INFO     | current chi2=1.6788769248839455 (change=31.378627020804302 %)
[2025-06-05 02:28:44] 2025-06-04 22:41:13,902 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 02:28:44] 2025-06-04 22:41:13,904 | INFO     | sum of deviations: 4587957070.999998
[2025-06-05 02:28:44] 2025-06-04 22:41:13,904 | INFO     | mean x: 1749069476.0
[2025-06-05 02:28:44] 2025-06-04 22:41:13,904 | INFO     | mean y: 2498927.4566210047
[2025-06-05 02:28:44] 2025-06-04 22:41:13,905 | INFO     | -- intersect: -2461410238.1173286
[2025-06-05 02:28:44] 2025-06-04 22:41:13,905 | INFO     | intersect: -2461410238.1173286
[2025-06-05 02:28:44] 2025-06-04 22:41:13,905 | INFO     | chi2: 1.679172384187946
[2025-06-05 02:28:44] 2025-06-04 22:41:13,905 | INFO     | current chi2=1.679172384187946 (change=-0.017598627964999215 %)
[2025-06-05 02:28:44] 2025-06-04 22:41:13,905 | INFO     | right removable region: 218
[2025-06-05 02:28:44] 2025-06-04 22:41:13,906 | INFO     | sum of square deviations: 3485088600.0
[2025-06-05 02:28:44] 2025-06-04 22:41:13,907 | INFO     | sum of deviations: -46156807749.50001
[2025-06-05 02:28:44] 2025-06-04 22:41:13,908 | INFO     | mean x: 1749069933.5
[2025-06-05 02:28:44] 2025-06-04 22:41:13,908 | INFO     | mean y: 2511981.433035714
[2025-06-05 02:28:44] 2025-06-04 22:41:13,908 | INFO     | -- intersect: 23167341897.375565
[2025-06-05 02:28:44] 2025-06-04 22:41:13,908 | INFO     | intersect: 23167341897.375565
[2025-06-05 02:28:44] 2025-06-04 22:41:13,908 | INFO     | chi2: 0.9686498774744238
[2025-06-05 02:28:44] 2025-06-04 22:41:13,909 | INFO     | current chi2=0.9686498774744238 (change=60.40800636233684 %)
[2025-06-05 02:28:44] 2025-06-04 22:41:13,909 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 02:28:44] 2025-06-04 22:41:13,911 | INFO     | sum of deviations: -43561388930.0
[2025-06-05 02:28:44] 2025-06-04 22:41:13,911 | INFO     | mean x: 1749070086.0
[2025-06-05 02:28:44] 2025-06-04 22:41:13,911 | INFO     | mean y: 2510211.086757991
[2025-06-05 02:28:44] 2025-06-04 22:41:13,911 | INFO     | -- intersect: 23396657370.989216
[2025-06-05 02:28:44] 2025-06-04 22:41:13,911 | INFO     | intersect: 23396657370.989216
[2025-06-05 02:28:44] 2025-06-04 22:41:13,912 | INFO     | chi2: 0.9543712604138299
[2025-06-05 02:28:44] 2025-06-04 22:41:13,912 | INFO     | current chi2=0.9543712604138299 (change=1.4740741100203019 %)
[2025-06-05 02:28:44] 2025-06-04 22:41:13,912 | INFO     | left removable region: 20
[2025-06-05 02:28:44] 2025-06-04 22:41:13,912 | INFO     | sum of square deviations: 2406926989.5
[2025-06-05 02:28:44] 2025-06-04 22:41:13,914 | INFO     | sum of deviations: -13000706923.000006
[2025-06-05 02:28:44] 2025-06-04 22:41:13,914 | INFO     | mean x: 1749070055.5
[2025-06-05 02:28:44] 2025-06-04 22:41:13,914 | INFO     | mean y: 2509632.767676768
[2025-06-05 02:28:44] 2025-06-04 22:41:13,914 | INFO     | -- intersect: 9449886839.6993
[2025-06-05 02:28:44] 2025-06-04 22:41:13,914 | INFO     | intersect: 9449886839.6993
[2025-06-05 02:28:44] 2025-06-04 22:41:13,915 | INFO     | chi2: 0.11084512968424279
[2025-06-05 02:28:44] 2025-06-04 22:41:13,915 | INFO     | -- intersect: 9449886839.6993
[2025-06-05 02:28:44] 2025-06-04 22:41:13,915 | INFO     | current memory leak: -5.40 B/s (using 198 data points, chi2=0.11)
[2025-06-05 02:28:44] 2025-06-04 22:41:13,916 | INFO     | ..............................
[2025-06-05 02:28:44] 2025-06-04 22:41:13,916 | INFO     | . Timing measurements:
[2025-06-05 02:28:44] 2025-06-04 22:41:13,916 | INFO     | . get job = 0 s
[2025-06-05 02:28:44] 2025-06-04 22:41:13,916 | INFO     | . initial setup = 2 s
[2025-06-05 02:28:44] 2025-06-04 22:41:13,916 | INFO     | . payload setup = 13 s
[2025-06-05 02:28:44] 2025-06-04 22:41:13,916 | INFO     | . stage-in = 0 s
[2025-06-05 02:28:44] 2025-06-04 22:41:13,916 | INFO     | . payload execution = 13965 s
[2025-06-05 02:28:44] 2025-06-04 22:41:13,917 | INFO     | . stage-out = 3 s
[2025-06-05 02:28:44] 2025-06-04 22:41:13,917 | INFO     | . log creation = 1 s
[2025-06-05 02:28:44] 2025-06-04 22:41:13,917 | INFO     | ..............................
[2025-06-05 02:28:44] 2025-06-04 22:41:14,540 | INFO     | 
[2025-06-05 02:28:44] 2025-06-04 22:41:14,540 | INFO     | job summary report
[2025-06-05 02:28:44] 2025-06-04 22:41:14,540 | INFO     | --------------------------------------------------
[2025-06-05 02:28:44] 2025-06-04 22:41:14,540 | INFO     | PanDA job id: 6678245441
[2025-06-05 02:28:44] 2025-06-04 22:41:14,541 | INFO     | task id: 45006595
[2025-06-05 02:28:44] 2025-06-04 22:41:14,541 | INFO     | errors: (none)
[2025-06-05 02:28:44] 2025-06-04 22:41:14,541 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 02:28:44] 2025-06-04 22:41:14,541 | INFO     | pilot state: finished 
[2025-06-05 02:28:44] 2025-06-04 22:41:14,541 | INFO     | transexitcode: 0
[2025-06-05 02:28:44] 2025-06-04 22:41:14,541 | INFO     | exeerrorcode: 0
[2025-06-05 02:28:44] 2025-06-04 22:41:14,541 | INFO     | exeerrordiag: 
[2025-06-05 02:28:44] 2025-06-04 22:41:14,541 | INFO     | exitcode: 0
[2025-06-05 02:28:44] 2025-06-04 22:41:14,541 | INFO     | exitmsg: OK
[2025-06-05 02:28:44] 2025-06-04 22:41:14,542 | INFO     | cpuconsumptiontime: 53108 s
[2025-06-05 02:28:44] 2025-06-04 22:41:14,542 | INFO     | nevents: 400
[2025-06-05 02:28:44] 2025-06-04 22:41:14,542 | INFO     | neventsw: 0
[2025-06-05 02:28:44] 2025-06-04 22:41:14,542 | INFO     | pid: 15444
[2025-06-05 02:28:44] 2025-06-04 22:41:14,542 | INFO     | pgrp: 15444
[2025-06-05 02:28:44] 2025-06-04 22:41:14,542 | INFO     | corecount: 8
[2025-06-05 02:28:44] 2025-06-04 22:41:14,542 | INFO     | event service: False
[2025-06-05 02:28:44] 2025-06-04 22:41:14,542 | INFO     | sizes: {0: 2397115, 1: 2397370, 2: 2397370, 11: 2397604, 12: 2397632, 13983: 2427463, 13987: 2436404, 13988: 2436460, 14081: 2436630}
[2025-06-05 02:28:44] 2025-06-04 22:41:14,542 | INFO     | --------------------------------------------------
[2025-06-05 02:28:44] 2025-06-04 22:41:14,542 | INFO     | 
[2025-06-05 02:28:44] 2025-06-04 22:41:14,542 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-06-05 02:28:44] 2025-06-04 22:41:15,113 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,114 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,114 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,114 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,114 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,114 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,114 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,114 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,114 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,114 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,114 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,115 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,115 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,115 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,115 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,115 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,115 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,115 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 02:28:44] 2025-06-04 22:41:15,115 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,116 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 02:28:44] 2025-06-04 22:41:15,116 | INFO     | job 6678245441 has completed (purged errors)
[2025-06-05 02:28:44] 2025-06-04 22:41:15,116 | INFO     | overall cleanup function is called
[2025-06-05 02:28:44] 2025-06-04 22:41:16,125 | INFO     | --- collectZombieJob: --- 10, [15444]
[2025-06-05 02:28:44] 2025-06-04 22:41:16,125 | INFO     | zombie collector waiting for pid 15444
[2025-06-05 02:28:44] 2025-06-04 22:41:16,125 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 02:28:44] 2025-06-04 22:41:16,125 | INFO     | collected zombie processes
[2025-06-05 02:28:44] 2025-06-04 22:41:16,125 | INFO     | will attempt to kill all subprocesses of pid=15444
[2025-06-05 02:28:44] 2025-06-04 22:41:16,275 | INFO     | process IDs to be killed: [15444] (in reverse order)
[2025-06-05 02:28:44] 2025-06-04 22:41:16,473 | INFO     | PID=6836 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-05 02:28:44] 2025-06-04 22:41:16,473 | INFO     | .. there are 9 such processes running
[2025-06-05 02:28:44] 2025-06-04 22:41:16,720 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 02:28:44] 2025-06-04 22:41:16,721 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 02:28:44] 2025-06-04 22:41:16,724 | INFO     | did not find any defunct processes belonging to 15444
[2025-06-05 02:28:44] 2025-06-04 22:41:16,727 | INFO     | did not find any defunct processes belonging to 15444
[2025-06-05 02:28:44] 2025-06-04 22:41:16,728 | INFO     | ready for new job
[2025-06-05 02:28:44] 2025-06-04 22:41:16,728 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 02:28:44] 2025-06-04 22:41:16,730 | INFO     | **************************************
[2025-06-05 02:28:44] 2025-06-04 22:41:16,730 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 02:28:44] 2025-06-04 22:41:16,730 | INFO     | **************************************
[2025-06-05 02:28:44] 2025-06-04 22:41:16,730 | INFO     | 
[2025-06-05 02:28:44] 2025-06-04 22:41:16,731 | INFO     | pilot is running in a VM
[2025-06-05 02:28:44] 2025-06-04 22:41:16,731 | INFO     | architecture information:
[2025-06-05 02:28:44] 2025-06-04 22:41:16,742 | INFO     | executing command: cat /etc/os-release
[2025-06-05 02:28:44] 2025-06-04 22:41:16,996 | INFO     | cat /etc/os-release:
[2025-06-05 02:28:44] NAME="CentOS Linux"
[2025-06-05 02:28:44] VERSION="7 (Core)"
[2025-06-05 02:28:44] ID="centos"
[2025-06-05 02:28:44] ID_LIKE="rhel fedora"
[2025-06-05 02:28:44] VERSION_ID="7"
[2025-06-05 02:28:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 02:28:44] ANSI_COLOR="0;31"
[2025-06-05 02:28:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 02:28:44] HOME_URL="https://www.centos.org/"
[2025-06-05 02:28:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 02:28:44] 
[2025-06-05 02:28:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 02:28:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 02:28:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 02:28:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 02:28:44] 
[2025-06-05 02:28:44] 2025-06-04 22:41:16,997 | INFO     | **************************************
[2025-06-05 02:28:44] 2025-06-04 22:41:17,500 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-06-05 02:28:44] 2025-06-04 22:41:17,785 | INFO     | sufficient remaining disk space (497306042368 B)
[2025-06-05 02:28:44] 2025-06-04 22:41:17,786 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 02:28:44] 2025-06-04 22:41:17,786 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 02:28:44] 2025-06-04 22:41:17,786 | INFO     | update_server=False
[2025-06-05 02:28:44] 2025-06-04 22:41:17,786 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 02:28:44] 2025-06-04 22:41:17,787 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 02:28:44] 2025-06-04 22:41:18,149 | INFO     | all data control threads have been joined
[2025-06-05 02:28:44] 2025-06-04 22:41:18,193 | INFO     | all payload control threads have been joined
[2025-06-05 02:28:44] 2025-06-04 22:41:18,265 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:28:44] 2025-06-04 22:41:18,265 | INFO     | aborting loop
[2025-06-05 02:28:44] 2025-06-04 22:41:18,482 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 02:28:44] 2025-06-04 22:41:18,482 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 02:28:44] 2025-06-04 22:41:18,482 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 02:28:44] 2025-06-04 22:41:18,603 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 02:28:44] 2025-06-04 22:41:18,625 | INFO     | all job control threads have been joined
[2025-06-05 02:28:44] 2025-06-04 22:41:18,793 | INFO     | [job] retrieve thread has finished
[2025-06-05 02:28:44] 2025-06-04 22:41:18,829 | INFO     | [data] copytool_in thread has finished
[2025-06-05 02:28:44] 2025-06-04 22:41:18,879 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 02:28:44] 2025-06-04 22:41:18,914 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 02:28:44] 2025-06-04 22:41:18,967 | INFO     | [payload] failed_post thread has finished
[2025-06-05 02:28:44] 2025-06-04 22:41:19,055 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:28:44] 2025-06-04 22:41:19,155 | INFO     | [data] control thread has finished
[2025-06-05 02:28:44] 2025-06-04 22:41:19,199 | INFO     | [payload] control thread has finished
[2025-06-05 02:28:44] 2025-06-04 22:41:19,272 | INFO     | [job] job monitor thread has finished
[2025-06-05 02:28:44] 2025-06-04 22:41:19,524 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 02:28:44] 2025-06-04 22:41:19,631 | INFO     | [job] control thread has finished
[2025-06-05 02:28:44] 2025-06-04 22:41:19,642 | INFO     | [payload] validate_post thread has finished
[2025-06-05 02:28:44] 2025-06-04 22:41:19,784 | INFO     | [job] validate thread has finished
[2025-06-05 02:28:44] 2025-06-04 22:41:20,004 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 02:28:44] 2025-06-04 22:41:20,060 | INFO     | [job] queue monitor thread has finished
[2025-06-05 02:28:44] 2025-06-04 22:41:20,610 | INFO     | [data] copytool_out thread has finished
[2025-06-05 02:28:44] 2025-06-04 22:41:21,796 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 02:28:44] 2025-06-04 22:41:23,379 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139626253748032)>', '<ExcThread(monitor, started 139625813235456)>']
[2025-06-05 02:28:44] 2025-06-04 22:41:23,511 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 02:28:44] 2025-06-04 22:41:23,511 | INFO     | [monitor] control thread has ended
[2025-06-05 02:28:44] 2025-06-04 22:41:28,405 | INFO     | all workflow threads have been joined
[2025-06-05 02:28:44] 2025-06-04 22:41:28,405 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 02:28:44] 2025-06-04 22:41:28,405 | INFO     | traces error code: 0
[2025-06-05 02:28:44] 2025-06-04 22:41:28,406 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 02:28:44] 2025-06-04 22:41:28,815 [wrapper] ==== pilot stdout END ====
[2025-06-05 02:28:44] 2025-06-04 22:41:28,938 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 02:28:44] 2025-06-04 22:41:29,040 [wrapper] pilotpid: 6836
[2025-06-05 02:28:44] 2025-06-04 22:41:29,130 [wrapper] Pilot exit status: 0
[2025-06-05 02:28:44] 2025-06-04 22:41:29,514 [wrapper] pandaids: 6678245441
[2025-06-05 02:28:44] 2025-06-04 22:41:30,290 [wrapper] cleanup supervisor_pilot 14257 6837
[2025-06-05 02:28:44] 2025-06-04 22:41:30,418 [wrapper] Test setup, not cleaning
[2025-06-05 02:28:44] 2025-06-04 22:41:30,511 [wrapper] apfmon messages muted
[2025-06-05 02:28:44] 2025-06-04 22:41:30,593 [wrapper] ==== wrapper stdout END ====
[2025-06-05 02:28:44] 2025-06-04 22:41:30,686 [wrapper] ==== wrapper stderr END ====
[2025-06-05 02:28:44]  *** Error codes and diagnostics ***
[2025-06-05 02:28:44]     "exeErrorCode": 0,
[2025-06-05 02:28:44]     "exeErrorDiag": "",
[2025-06-05 02:28:44]     "pilotErrorCode": 0,
[2025-06-05 02:28:44]     "pilotErrorDiag": "",
[2025-06-05 02:28:44]  *** Listing of results directory ***
[2025-06-05 02:28:44] total 397552
[2025-06-05 02:28:44] -rw-r--r--. 1 boinc boinc    495897 Jun  4 02:59 pilot3.tar.gz
[2025-06-05 02:28:44] -rw-r--r--. 1 boinc boinc      5111 Jun  4 03:00 queuedata.json
[2025-06-05 02:28:44] -rwx------. 1 boinc boinc     37140 Jun  4 03:01 runpilot2-wrapper.sh
[2025-06-05 02:28:44] -rw-r--r--. 1 boinc boinc       100 Jun  4 18:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 02:28:44] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 18:49 run_atlas
[2025-06-05 02:28:44] -rw-r--r--. 1 boinc boinc       105 Jun  4 18:49 job.xml
[2025-06-05 02:28:44] -rw-r--r--. 1 boinc boinc      6391 Jun  4 18:49 init_data.xml
[2025-06-05 02:28:44] -rw-r--r--. 2 boinc boinc 212920962 Jun  4 18:49 EVNT.45006593._001990.pool.root.1
[2025-06-05 02:28:44] -rw-r--r--. 2 boinc boinc     15093 Jun  4 18:49 start_atlas.sh
[2025-06-05 02:28:44] drwxrwx--x. 2 boinc boinc        68 Jun  4 18:49 shared
[2025-06-05 02:28:44] -rw-r--r--. 2 boinc boinc    508883 Jun  4 18:49 input.tar.gz
[2025-06-05 02:28:44] -rw-r--r--. 1 boinc boinc         0 Jun  4 18:49 boinc_lockfile
[2025-06-05 02:28:44] -rw-r--r--. 1 boinc boinc      2525 Jun  4 20:45 pandaJob.out
[2025-06-05 02:28:44] -rw-------. 1 boinc boinc    990984 Jun  4 20:46 agis_schedconf.cvmfs.json
[2025-06-05 02:28:44] drwx------. 4 boinc boinc      4096 Jun  4 20:46 pilot3
[2025-06-05 02:28:44] -rw-------. 1 boinc boinc 187136091 Jun  5 00:38 HITS.45006595._049640.pool.root.1
[2025-06-05 02:28:44] -rw-r--r--. 1 boinc boinc       531 Jun  5 00:38 boinc_task_state.xml
[2025-06-05 02:28:44] -rw-------. 1 boinc boinc      1019 Jun  5 00:39 memory_monitor_summary.json
[2025-06-05 02:28:44] -rw-------. 1 boinc boinc   1598969 Jun  5 00:39 agis_ddmendpoints.agis.ALL.json
[2025-06-05 02:28:44] -rw-------. 1 boinc boinc    392255 Jun  5 00:39 log.45006595._049640.job.log.tgz.1
[2025-06-05 02:28:44] -rw-------. 1 boinc boinc        95 Jun  5 00:40 pilot_heartbeat.json
[2025-06-05 02:28:44] -rw-------. 1 boinc boinc      7703 Jun  5 00:41 heartbeat.json
[2025-06-05 02:28:44] -rw-------. 1 boinc boinc      4416 Jun  5 00:41 pilotlog.txt
[2025-06-05 02:28:44] -rw-------. 1 boinc boinc   1215550 Jun  5 00:41 log.45006595._049640.job.log.1
[2025-06-05 02:28:44] -rw-------. 1 boinc boinc       357 Jun  5 00:41 output.list
[2025-06-05 02:28:44] -rw-r--r--. 1 boinc boinc       620 Jun  5 00:41 runtime_log
[2025-06-05 02:28:44] -rw-------. 1 boinc boinc   1628160 Jun  5 00:41 result.tar.gz
[2025-06-05 02:28:44] -rw-r--r--. 1 boinc boinc      8659 Jun  5 00:41 runtime_log.err
[2025-06-05 02:28:44] -rw-------. 1 boinc boinc       657 Jun  5 00:41 NbjMDmKgrg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmejmKDmFCTjFo.diag
[2025-06-05 02:28:44] -rw-r--r--. 1 boinc boinc      8192 Jun  5 02:28 boinc_mmap_file
[2025-06-05 02:28:44] -rw-r--r--. 1 boinc boinc        28 Jun  5 02:28 wrapper_checkpoint.txt
[2025-06-05 02:28:44] -rw-r--r--. 1 boinc boinc     20558 Jun  5 02:28 stderr.txt
[2025-06-05 02:28:45] HITS file was successfully produced:
[2025-06-05 02:28:45] -rw-------. 1 boinc boinc 187136091 Jun  5 00:38 shared/HITS.pool.root.1
[2025-06-05 02:28:45]  *** Contents of shared directory: ***
[2025-06-05 02:28:45] total 392792
[2025-06-05 02:28:45] -rw-r--r--. 2 boinc boinc 212920962 Jun  4 18:49 ATLAS.root_0
[2025-06-05 02:28:45] -rw-r--r--. 2 boinc boinc     15093 Jun  4 18:49 start_atlas.sh
[2025-06-05 02:28:45] -rw-r--r--. 2 boinc boinc    508883 Jun  4 18:49 input.tar.gz
[2025-06-05 02:28:45] -rw-------. 1 boinc boinc 187136091 Jun  5 00:38 HITS.pool.root.1
[2025-06-05 02:28:45] -rw-------. 1 boinc boinc   1628160 Jun  5 00:41 result.tar.gz
02:28:46 (31194): run_atlas exited; CPU time 53292.222321
02:28:46 (31194): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN