Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:45:46 (2875): wrapper (7.7.26015): starting
15:45:46 (2875): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 15:45:46] Arguments: --nthreads 8
[2025-06-04 15:45:46] Threads: 8
[2025-06-04 15:45:46] Checking for CVMFS
[2025-06-04 15:45:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 15:45:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 15:45:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 15:45:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 15:45:49] 2.11.2.0 16765 33300 91440 146781 1 59 15795791 25165825 3135 130560 0 16050612 99.774 19843466 2085 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 15:45:49] CVMFS is ok
[2025-06-04 15:45:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 15:45:49] Checking for apptainer binary...
[2025-06-04 15:45:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 15:45:49] Running /usr/bin/apptainer --version
[2025-06-04 15:45:49] apptainer version 1.3.2-1.el7
[2025-06-04 15:45:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 16:16:22] cg-vwn404.simple-grid.lan
[2025-06-04 16:16:22] apptainer works
[2025-06-04 16:16:22] Set ATHENA_PROC_NUMBER=8
[2025-06-04 16:16:22] Set ATHENA_CORE_NUMBER=8
[2025-06-04 16:16:22] Starting ATLAS job with PandaID=6678218924
[2025-06-04 16:16:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 20:22:27]  *** The last 200 lines of the pilot log: ***
[2025-06-04 20:22:27] 2025-06-04 18:00:14,637 | INFO     | extracted standard info from prmon json
[2025-06-04 20:22:27] 2025-06-04 18:00:14,637 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 20:22:27] 2025-06-04 18:00:14,637 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 20:22:27] 2025-06-04 18:00:14,637 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 20:22:27] 2025-06-04 18:00:14,637 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 20:22:27] 2025-06-04 18:00:14,642 | INFO     | fitting pss+swap vs Time
[2025-06-04 20:22:27] 2025-06-04 18:00:14,643 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 20:22:27] 2025-06-04 18:00:14,644 | INFO     | sum of deviations: 74305469785.5
[2025-06-04 20:22:27] 2025-06-04 18:00:14,645 | INFO     | mean x: 1749053579.5
[2025-06-04 20:22:27] 2025-06-04 18:00:14,645 | INFO     | mean y: 2409168.8701923075
[2025-06-04 20:22:27] 2025-06-04 18:00:14,645 | INFO     | -- intersect: -46573946811.34406
[2025-06-04 20:22:27] 2025-06-04 18:00:14,645 | INFO     | intersect: -46573946811.34406
[2025-06-04 20:22:27] 2025-06-04 18:00:14,646 | INFO     | chi2: 5.2708717506673075
[2025-06-04 20:22:27] 2025-06-04 18:00:14,646 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 20:22:27] 2025-06-04 18:00:14,648 | INFO     | sum of deviations: 85991516756.0
[2025-06-04 20:22:27] 2025-06-04 18:00:14,648 | INFO     | mean x: 1749053427.0
[2025-06-04 20:22:27] 2025-06-04 18:00:14,659 | INFO     | mean y: 2418034.512315271
[2025-06-04 20:22:27] 2025-06-04 18:00:14,659 | INFO     | -- intersect: -57980849599.47377
[2025-06-04 20:22:27] 2025-06-04 18:00:14,659 | INFO     | intersect: -57980849599.47377
[2025-06-04 20:22:27] 2025-06-04 18:00:14,660 | INFO     | chi2: 4.534203351589762
[2025-06-04 20:22:27] 2025-06-04 18:00:14,660 | INFO     | current chi2=4.534203351589762 (change=13.97621558491308 %)
[2025-06-04 20:22:27] 2025-06-04 18:00:14,660 | INFO     | right removable region: 202
[2025-06-04 20:22:27] 2025-06-04 18:00:14,661 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 20:22:27] 2025-06-04 18:00:14,662 | INFO     | sum of deviations: 8518001631.0
[2025-06-04 20:22:27] 2025-06-04 18:00:14,662 | INFO     | mean x: 1749053732.0
[2025-06-04 20:22:27] 2025-06-04 18:00:14,663 | INFO     | mean y: 2460144.6798029556
[2025-06-04 20:22:27] 2025-06-04 18:00:14,663 | INFO     | -- intersect: -5741148911.606726
[2025-06-04 20:22:27] 2025-06-04 18:00:14,663 | INFO     | intersect: -5741148911.606726
[2025-06-04 20:22:27] 2025-06-04 18:00:14,663 | INFO     | chi2: 1.2177414658613632
[2025-06-04 20:22:27] 2025-06-04 18:00:14,663 | INFO     | current chi2=1.2177414658613632 (change=76.89677299192125 %)
[2025-06-04 20:22:27] 2025-06-04 18:00:14,664 | INFO     | sum of square deviations: 2406926989.5
[2025-06-04 20:22:27] 2025-06-04 18:00:14,665 | INFO     | sum of deviations: -9567002496.5
[2025-06-04 20:22:27] 2025-06-04 18:00:14,665 | INFO     | mean x: 1749053884.5
[2025-06-04 20:22:27] 2025-06-04 18:00:14,666 | INFO     | mean y: 2474786.974747475
[2025-06-04 20:22:27] 2025-06-04 18:00:14,666 | INFO     | -- intersect: 6954577178.331693
[2025-06-04 20:22:27] 2025-06-04 18:00:14,666 | INFO     | intersect: 6954577178.331693
[2025-06-04 20:22:27] 2025-06-04 18:00:14,666 | INFO     | chi2: 0.8129901662473173
[2025-06-04 20:22:27] 2025-06-04 18:00:14,666 | INFO     | current chi2=0.8129901662473173 (change=33.237867885836266 %)
[2025-06-04 20:22:27] 2025-06-04 18:00:14,667 | INFO     | sum of square deviations: 2229146912.0
[2025-06-04 20:22:27] 2025-06-04 18:00:14,668 | INFO     | sum of deviations: -11005042696.0
[2025-06-04 20:22:27] 2025-06-04 18:00:14,668 | INFO     | mean x: 1749054037.0
[2025-06-04 20:22:27] 2025-06-04 18:00:14,668 | INFO     | mean y: 2475986.8186528496
[2025-06-04 20:22:27] 2025-06-04 18:00:14,669 | INFO     | -- intersect: 8637355209.528297
[2025-06-04 20:22:27] 2025-06-04 18:00:14,669 | INFO     | intersect: 8637355209.528297
[2025-06-04 20:22:27] 2025-06-04 18:00:14,669 | INFO     | chi2: 0.799444462740278
[2025-06-04 20:22:27] 2025-06-04 18:00:14,669 | INFO     | current chi2=0.799444462740278 (change=1.666158345993895 %)
[2025-06-04 20:22:27] 2025-06-04 18:00:14,669 | INFO     | left removable region: 30
[2025-06-04 20:22:27] 2025-06-04 18:00:14,670 | INFO     | sum of square deviations: 1577789583.0
[2025-06-04 20:22:27] 2025-06-04 18:00:14,671 | INFO     | sum of deviations: 3130248458.5000005
[2025-06-04 20:22:27] 2025-06-04 18:00:14,671 | INFO     | mean x: 1749054311.5
[2025-06-04 20:22:27] 2025-06-04 18:00:14,671 | INFO     | mean y: 2486077.5406976743
[2025-06-04 20:22:27] 2025-06-04 18:00:14,671 | INFO     | -- intersect: -3467542259.18819
[2025-06-04 20:22:27] 2025-06-04 18:00:14,671 | INFO     | intersect: -3467542259.18819
[2025-06-04 20:22:27] 2025-06-04 18:00:14,672 | INFO     | chi2: 0.0007304736455155918
[2025-06-04 20:22:27] 2025-06-04 18:00:14,672 | INFO     | -- intersect: -3467542259.18819
[2025-06-04 20:22:27] 2025-06-04 18:00:14,672 | INFO     | current memory leak: 1.98 B/s (using 172 data points, chi2=0.00)
[2025-06-04 20:22:27] 2025-06-04 18:00:14,673 | INFO     | ..............................
[2025-06-04 20:22:27] 2025-06-04 18:00:14,673 | INFO     | . Timing measurements:
[2025-06-04 20:22:27] 2025-06-04 18:00:14,673 | INFO     | . get job = 0 s
[2025-06-04 20:22:27] 2025-06-04 18:00:14,673 | INFO     | . initial setup = 11 s
[2025-06-04 20:22:27] 2025-06-04 18:00:14,673 | INFO     | . payload setup = 158 s
[2025-06-04 20:22:27] 2025-06-04 18:00:14,673 | INFO     | . stage-in = 0 s
[2025-06-04 20:22:27] 2025-06-04 18:00:14,674 | INFO     | . payload execution = 12800 s
[2025-06-04 20:22:27] 2025-06-04 18:00:14,674 | INFO     | . stage-out = 3 s
[2025-06-04 20:22:27] 2025-06-04 18:00:14,674 | INFO     | . log creation = 0 s
[2025-06-04 20:22:27] 2025-06-04 18:00:14,674 | INFO     | ..............................
[2025-06-04 20:22:27] 2025-06-04 18:00:14,849 | INFO     | 
[2025-06-04 20:22:27] 2025-06-04 18:00:14,849 | INFO     | job summary report
[2025-06-04 20:22:27] 2025-06-04 18:00:14,849 | INFO     | --------------------------------------------------
[2025-06-04 20:22:27] 2025-06-04 18:00:14,850 | INFO     | PanDA job id: 6678218924
[2025-06-04 20:22:27] 2025-06-04 18:00:14,850 | INFO     | task id: 45006595
[2025-06-04 20:22:27] 2025-06-04 18:00:14,850 | INFO     | errors: (none)
[2025-06-04 20:22:27] 2025-06-04 18:00:14,850 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 20:22:27] 2025-06-04 18:00:14,850 | INFO     | pilot state: finished 
[2025-06-04 20:22:27] 2025-06-04 18:00:14,850 | INFO     | transexitcode: 0
[2025-06-04 20:22:27] 2025-06-04 18:00:14,850 | INFO     | exeerrorcode: 0
[2025-06-04 20:22:27] 2025-06-04 18:00:14,850 | INFO     | exeerrordiag: 
[2025-06-04 20:22:27] 2025-06-04 18:00:14,850 | INFO     | exitcode: 0
[2025-06-04 20:22:27] 2025-06-04 18:00:14,850 | INFO     | exitmsg: OK
[2025-06-04 20:22:27] 2025-06-04 18:00:14,850 | INFO     | cpuconsumptiontime: 48022 s
[2025-06-04 20:22:27] 2025-06-04 18:00:14,850 | INFO     | nevents: 400
[2025-06-04 20:22:27] 2025-06-04 18:00:14,851 | INFO     | neventsw: 0
[2025-06-04 20:22:27] 2025-06-04 18:00:14,851 | INFO     | pid: 2533
[2025-06-04 20:22:27] 2025-06-04 18:00:14,851 | INFO     | pgrp: 2533
[2025-06-04 20:22:27] 2025-06-04 18:00:14,851 | INFO     | corecount: 8
[2025-06-04 20:22:27] 2025-06-04 18:00:14,851 | INFO     | event service: False
[2025-06-04 20:22:27] 2025-06-04 18:00:14,851 | INFO     | sizes: {0: 2397171, 1: 2397370, 12: 2397370, 23: 2397398, 33: 2397426, 44: 2397482, 55: 2397638, 66: 2397666, 77: 2397694, 87: 2397750, 89: 2397984, 98: 2398320, 1
[2025-06-04 20:22:27] 2025-06-04 18:00:14,851 | INFO     | --------------------------------------------------
[2025-06-04 20:22:27] 2025-06-04 18:00:14,851 | INFO     | 
[2025-06-04 20:22:27] 2025-06-04 18:00:14,851 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-04 20:22:27] 2025-06-04 18:00:15,428 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,428 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,429 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,429 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,429 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,429 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,429 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,429 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,429 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,429 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,429 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,429 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,430 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,430 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,430 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,430 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,430 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,430 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 20:22:27] 2025-06-04 18:00:15,430 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,430 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 20:22:27] 2025-06-04 18:00:15,430 | INFO     | job 6678218924 has completed (purged errors)
[2025-06-04 20:22:27] 2025-06-04 18:00:15,430 | INFO     | overall cleanup function is called
[2025-06-04 20:22:27] 2025-06-04 18:00:16,439 | INFO     | --- collectZombieJob: --- 10, [2533]
[2025-06-04 20:22:27] 2025-06-04 18:00:16,439 | INFO     | zombie collector waiting for pid 2533
[2025-06-04 20:22:27] 2025-06-04 18:00:16,439 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 20:22:27] 2025-06-04 18:00:16,440 | INFO     | collected zombie processes
[2025-06-04 20:22:27] 2025-06-04 18:00:16,440 | INFO     | will attempt to kill all subprocesses of pid=2533
[2025-06-04 20:22:27] 2025-06-04 18:00:16,574 | INFO     | process IDs to be killed: [2533] (in reverse order)
[2025-06-04 20:22:27] 2025-06-04 18:00:17,283 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 20:22:27] 2025-06-04 18:00:17,283 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 20:22:27] 2025-06-04 18:00:17,287 | INFO     | did not find any defunct processes belonging to 2533
[2025-06-04 20:22:27] 2025-06-04 18:00:17,290 | INFO     | did not find any defunct processes belonging to 2533
[2025-06-04 20:22:27] 2025-06-04 18:00:17,290 | INFO     | ready for new job
[2025-06-04 20:22:27] 2025-06-04 18:00:17,290 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 20:22:27] 2025-06-04 18:00:17,292 | INFO     | **************************************
[2025-06-04 20:22:27] 2025-06-04 18:00:17,292 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 20:22:27] 2025-06-04 18:00:17,292 | INFO     | **************************************
[2025-06-04 20:22:27] 2025-06-04 18:00:17,293 | INFO     | 
[2025-06-04 20:22:27] 2025-06-04 18:00:17,293 | INFO     | pilot is running in a VM
[2025-06-04 20:22:27] 2025-06-04 18:00:17,293 | INFO     | architecture information:
[2025-06-04 20:22:27] 2025-06-04 18:00:17,309 | INFO     | executing command: cat /etc/os-release
[2025-06-04 20:22:27] 2025-06-04 18:00:17,531 | INFO     | cat /etc/os-release:
[2025-06-04 20:22:27] NAME="CentOS Linux"
[2025-06-04 20:22:27] VERSION="7 (Core)"
[2025-06-04 20:22:27] ID="centos"
[2025-06-04 20:22:27] ID_LIKE="rhel fedora"
[2025-06-04 20:22:27] VERSION_ID="7"
[2025-06-04 20:22:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 20:22:27] ANSI_COLOR="0;31"
[2025-06-04 20:22:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 20:22:27] HOME_URL="https://www.centos.org/"
[2025-06-04 20:22:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 20:22:27] 
[2025-06-04 20:22:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 20:22:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 20:22:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 20:22:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 20:22:27] 
[2025-06-04 20:22:27] 2025-06-04 18:00:17,531 | INFO     | **************************************
[2025-06-04 20:22:27] 2025-06-04 18:00:18,034 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-04 20:22:27] 2025-06-04 18:00:18,274 | INFO     | sufficient remaining disk space (496641245184 B)
[2025-06-04 20:22:27] 2025-06-04 18:00:18,274 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 20:22:27] 2025-06-04 18:00:18,274 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 20:22:27] 2025-06-04 18:00:18,274 | INFO     | update_server=False
[2025-06-04 20:22:27] 2025-06-04 18:00:18,274 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 20:22:27] 2025-06-04 18:00:18,275 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:22:27] 2025-06-04 18:00:18,275 | INFO     | aborting loop
[2025-06-04 20:22:27] 2025-06-04 18:00:18,284 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 20:22:27] 2025-06-04 18:00:18,291 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 20:22:27] 2025-06-04 18:00:18,292 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 20:22:27] 2025-06-04 18:00:18,292 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 20:22:27] 2025-06-04 18:00:18,292 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 20:22:27] 2025-06-04 18:00:18,302 | INFO     | all job control threads have been joined
[2025-06-04 20:22:27] 2025-06-04 18:00:18,610 | INFO     | all payload control threads have been joined
[2025-06-04 20:22:27] 2025-06-04 18:00:18,951 | INFO     | all data control threads have been joined
[2025-06-04 20:22:27] 2025-06-04 18:00:19,280 | INFO     | [job] retrieve thread has finished
[2025-06-04 20:22:27] 2025-06-04 18:00:19,281 | INFO     | [job] job monitor thread has finished
[2025-06-04 20:22:27] 2025-06-04 18:00:19,305 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 20:22:27] 2025-06-04 18:00:19,308 | INFO     | [job] control thread has finished
[2025-06-04 20:22:27] 2025-06-04 18:00:19,423 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 20:22:27] 2025-06-04 18:00:19,442 | INFO     | [payload] failed_post thread has finished
[2025-06-04 20:22:27] 2025-06-04 18:00:19,554 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 20:22:27] 2025-06-04 18:00:19,572 | INFO     | [job] validate thread has finished
[2025-06-04 20:22:27] 2025-06-04 18:00:19,616 | INFO     | [payload] control thread has finished
[2025-06-04 20:22:27] 2025-06-04 18:00:19,776 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 20:22:27] 2025-06-04 18:00:19,866 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:22:27] 2025-06-04 18:00:19,957 | INFO     | [data] control thread has finished
[2025-06-04 20:22:27] 2025-06-04 18:00:20,263 | INFO     | [data] copytool_in thread has finished
[2025-06-04 20:22:27] 2025-06-04 18:00:20,291 | INFO     | [data] copytool_out thread has finished
[2025-06-04 20:22:27] 2025-06-04 18:00:20,434 | INFO     | [payload] validate_post thread has finished
[2025-06-04 20:22:27] 2025-06-04 18:00:20,860 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 20:22:27] 2025-06-04 18:00:20,871 | INFO     | [job] queue monitor thread has finished
[2025-06-04 20:22:27] 2025-06-04 18:00:24,871 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 20:22:27] 2025-06-04 18:00:25,632 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140465673914176)>', '<ExcThread(monitor, started 140465026365184)>']
[2025-06-04 20:22:27] 2025-06-04 18:00:26,340 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 20:22:27] 2025-06-04 18:00:26,340 | INFO     | [monitor] control thread has ended
[2025-06-04 20:22:27] 2025-06-04 18:00:30,658 | INFO     | all workflow threads have been joined
[2025-06-04 20:22:27] 2025-06-04 18:00:30,658 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 20:22:27] 2025-06-04 18:00:30,659 | INFO     | traces error code: 0
[2025-06-04 20:22:27] 2025-06-04 18:00:30,659 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 20:22:27] 2025-06-04 18:00:31,017 [wrapper] ==== pilot stdout END ====
[2025-06-04 20:22:27] 2025-06-04 18:00:31,099 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 20:22:27] 2025-06-04 18:00:31,182 [wrapper] pilotpid: 26356
[2025-06-04 20:22:27] 2025-06-04 18:00:31,271 [wrapper] Pilot exit status: 0
[2025-06-04 20:22:27] 2025-06-04 18:00:31,519 [wrapper] pandaids: 6678218924
[2025-06-04 20:22:27] 2025-06-04 18:00:31,559 [wrapper] cleanup supervisor_pilot  1112 26357
[2025-06-04 20:22:27] 2025-06-04 18:00:31,563 [wrapper] Test setup, not cleaning
[2025-06-04 20:22:27] 2025-06-04 18:00:31,575 [wrapper] apfmon messages muted
[2025-06-04 20:22:27] 2025-06-04 18:00:31,595 [wrapper] ==== wrapper stdout END ====
[2025-06-04 20:22:27] 2025-06-04 18:00:31,606 [wrapper] ==== wrapper stderr END ====
[2025-06-04 20:22:27]  *** Error codes and diagnostics ***
[2025-06-04 20:22:27]     "exeErrorCode": 0,
[2025-06-04 20:22:27]     "exeErrorDiag": "",
[2025-06-04 20:22:27]     "pilotErrorCode": 0,
[2025-06-04 20:22:27]     "pilotErrorDiag": "",
[2025-06-04 20:22:27]  *** Listing of results directory ***
[2025-06-04 20:22:27] total 385248
[2025-06-04 20:22:27] -rw-r--r--. 1 boinc boinc    495897 Jun  4 01:58 pilot3.tar.gz
[2025-06-04 20:22:27] -rw-r--r--. 1 boinc boinc      5111 Jun  4 02:51 queuedata.json
[2025-06-04 20:22:27] -rwx------. 1 boinc boinc     37140 Jun  4 02:51 runpilot2-wrapper.sh
[2025-06-04 20:22:27] -rw-r--r--. 1 boinc boinc       100 Jun  4 15:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 20:22:27] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 15:45 run_atlas
[2025-06-04 20:22:27] -rw-r--r--. 1 boinc boinc       105 Jun  4 15:45 job.xml
[2025-06-04 20:22:27] -rw-r--r--. 1 boinc boinc      6392 Jun  4 15:45 init_data.xml
[2025-06-04 20:22:27] -rw-r--r--. 2 boinc boinc 214588191 Jun  4 15:45 EVNT.45006593._001979.pool.root.1
[2025-06-04 20:22:27] -rw-r--r--. 2 boinc boinc     15093 Jun  4 15:45 start_atlas.sh
[2025-06-04 20:22:27] drwxrwx--x. 2 boinc boinc        68 Jun  4 15:45 shared
[2025-06-04 20:22:27] -rw-r--r--. 2 boinc boinc    508881 Jun  4 15:45 input.tar.gz
[2025-06-04 20:22:27] -rw-r--r--. 1 boinc boinc         0 Jun  4 15:45 boinc_lockfile
[2025-06-04 20:22:27] -rw-r--r--. 1 boinc boinc      2525 Jun  4 16:16 pandaJob.out
[2025-06-04 20:22:27] -rw-------. 1 boinc boinc    986819 Jun  4 16:19 agis_schedconf.cvmfs.json
[2025-06-04 20:22:27] drwx------. 4 boinc boinc      4096 Jun  4 16:19 pilot3
[2025-06-04 20:22:27] -rw-------. 1 boinc boinc 173097197 Jun  4 19:57 HITS.45006595._049334.pool.root.1
[2025-06-04 20:22:27] -rw-r--r--. 1 boinc boinc       531 Jun  4 19:57 boinc_task_state.xml
[2025-06-04 20:22:27] -rw-------. 1 boinc boinc      1015 Jun  4 19:58 memory_monitor_summary.json
[2025-06-04 20:22:27] -rw-------. 1 boinc boinc   1598969 Jun  4 19:58 agis_ddmendpoints.agis.ALL.json
[2025-06-04 20:22:27] -rw-------. 1 boinc boinc    367528 Jun  4 19:58 log.45006595._049334.job.log.tgz.1
[2025-06-04 20:22:27] -rw-------. 1 boinc boinc        95 Jun  4 19:59 pilot_heartbeat.json
[2025-06-04 20:22:27] -rw-------. 1 boinc boinc      7691 Jun  4 20:00 heartbeat.json
[2025-06-04 20:22:27] -rw-------. 1 boinc boinc      4539 Jun  4 20:00 pilotlog.txt
[2025-06-04 20:22:27] -rw-------. 1 boinc boinc   1130115 Jun  4 20:00 log.45006595._049334.job.log.1
[2025-06-04 20:22:27] -rw-------. 1 boinc boinc       357 Jun  4 20:00 output.list
[2025-06-04 20:22:27] -rw-r--r--. 1 boinc boinc       620 Jun  4 20:00 runtime_log
[2025-06-04 20:22:27] -rw-------. 1 boinc boinc   1515520 Jun  4 20:00 result.tar.gz
[2025-06-04 20:22:27] -rw-------. 1 boinc boinc       657 Jun  4 20:00 xJbLDmSXrg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmyPaKDmM6aNyn.diag
[2025-06-04 20:22:27] -rw-r--r--. 1 boinc boinc      8659 Jun  4 20:00 runtime_log.err
[2025-06-04 20:22:27] -rw-r--r--. 1 boinc boinc      8192 Jun  4 20:22 boinc_mmap_file
[2025-06-04 20:22:27] -rw-r--r--. 1 boinc boinc        28 Jun  4 20:22 wrapper_checkpoint.txt
[2025-06-04 20:22:27] -rw-r--r--. 1 boinc boinc     20484 Jun  4 20:22 stderr.txt
[2025-06-04 20:22:27] HITS file was successfully produced:
[2025-06-04 20:22:27] -rw-------. 1 boinc boinc 173097197 Jun  4 19:57 shared/HITS.pool.root.1
[2025-06-04 20:22:27]  *** Contents of shared directory: ***
[2025-06-04 20:22:27] total 380600
[2025-06-04 20:22:27] -rw-r--r--. 2 boinc boinc 214588191 Jun  4 15:45 ATLAS.root_0
[2025-06-04 20:22:27] -rw-r--r--. 2 boinc boinc     15093 Jun  4 15:45 start_atlas.sh
[2025-06-04 20:22:27] -rw-r--r--. 2 boinc boinc    508881 Jun  4 15:45 input.tar.gz
[2025-06-04 20:22:27] -rw-------. 1 boinc boinc 173097197 Jun  4 19:57 HITS.pool.root.1
[2025-06-04 20:22:27] -rw-------. 1 boinc boinc   1515520 Jun  4 20:00 result.tar.gz
20:22:29 (2875): run_atlas exited; CPU time 48213.733347
20:22:29 (2875): called boinc_finish(0)

</stderr_txt>
]]>

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