Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:27:44 (4061157): wrapper (7.7.26015): starting
01:27:44 (4061157): wrapper: running run_atlas (--nthreads 10)
[2025-06-04 01:27:44] Arguments: --nthreads 10
[2025-06-04 01:27:44] Threads: 10
[2025-06-04 01:27:44] Checking for CVMFS
[2025-06-04 01:27:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 01:27:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 01:27:44] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 01:27:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 01:27:44] 2.12.6.0 1583849 139101 447320 146769 3 134 18169993 32935937 15009 130560 1 361632658 99.629 367233076 20340 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 01:27:44] CVMFS is ok
[2025-06-04 01:27:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 01:27:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 01:27:44] Further information can be found at the LHC@home message board.
[2025-06-04 01:27:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 01:27:44] Checking for apptainer binary...
[2025-06-04 01:27:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 01:27:44] Running /usr/bin/apptainer --version
[2025-06-04 01:27:44] apptainer version 1.4.1-1.el9
[2025-06-04 01:27:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 01:27:44] c-6-7.aglt2.org
[2025-06-04 01:27:44] apptainer works
[2025-06-04 01:27:44] Set ATHENA_PROC_NUMBER=10
[2025-06-04 01:27:44] Set ATHENA_CORE_NUMBER=10
[2025-06-04 01:27:44] Starting ATLAS job with PandaID=6678217975
[2025-06-04 01:27:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 03:27:12]  *** The last 200 lines of the pilot log: ***
[2025-06-04 03:27:12] 2025-06-04 07:26:57,221 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 03:27:12] 2025-06-04 07:26:57,222 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 03:27:12] 2025-06-04 07:26:57,222 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 03:27:12] 2025-06-04 07:26:57,224 | INFO     | fitting pss+swap vs Time
[2025-06-04 03:27:12] 2025-06-04 07:26:57,224 | INFO     | sum of square deviations: 496589324.63247883
[2025-06-04 03:27:12] 2025-06-04 07:26:57,224 | INFO     | sum of deviations: 7893875802.376084
[2025-06-04 03:27:12] 2025-06-04 07:26:57,224 | INFO     | mean x: 1749018441.3504274
[2025-06-04 03:27:12] 2025-06-04 07:26:57,224 | INFO     | mean y: 2246530.4786324785
[2025-06-04 03:27:12] 2025-06-04 07:26:57,224 | INFO     | -- intersect: -27800474283.755062
[2025-06-04 03:27:12] 2025-06-04 07:26:57,225 | INFO     | intersect: -27800474283.755062
[2025-06-04 03:27:12] 2025-06-04 07:26:57,225 | INFO     | chi2: 4.24013977425585
[2025-06-04 03:27:12] 2025-06-04 07:26:57,225 | INFO     | sum of square deviations: 435614638.99107105
[2025-06-04 03:27:12] 2025-06-04 07:26:57,226 | INFO     | sum of deviations: 15050508038.482136
[2025-06-04 03:27:12] 2025-06-04 07:26:57,226 | INFO     | mean x: 1749018288.8660715
[2025-06-04 03:27:12] 2025-06-04 07:26:57,226 | INFO     | mean y: 2263835.2321428573
[2025-06-04 03:27:12] 2025-06-04 07:26:57,226 | INFO     | -- intersect: -60426407425.67708
[2025-06-04 03:27:12] 2025-06-04 07:26:57,226 | INFO     | intersect: -60426407425.67708
[2025-06-04 03:27:12] 2025-06-04 07:26:57,226 | INFO     | chi2: 3.5942498372875558
[2025-06-04 03:27:12] 2025-06-04 07:26:57,226 | INFO     | current chi2=3.5942498372875558 (change=15.23275107320368 %)
[2025-06-04 03:27:12] 2025-06-04 07:26:57,226 | INFO     | right removable region: 111
[2025-06-04 03:27:12] 2025-06-04 07:26:57,226 | INFO     | sum of square deviations: 435589628.99107105
[2025-06-04 03:27:12] 2025-06-04 07:26:57,227 | INFO     | sum of deviations: -15881992553.464283
[2025-06-04 03:27:12] 2025-06-04 07:26:57,227 | INFO     | mean x: 1749018593.8660715
[2025-06-04 03:27:12] 2025-06-04 07:26:57,227 | INFO     | mean y: 2305578.035714286
[2025-06-04 03:27:12] 2025-06-04 07:26:57,227 | INFO     | -- intersect: 63773108266.77678
[2025-06-04 03:27:12] 2025-06-04 07:26:57,227 | INFO     | intersect: 63773108266.77678
[2025-06-04 03:27:12] 2025-06-04 07:26:57,227 | INFO     | chi2: 1.8711002749059773
[2025-06-04 03:27:12] 2025-06-04 07:26:57,227 | INFO     | current chi2=1.8711002749059773 (change=55.87173125125674 %)
[2025-06-04 03:27:12] 2025-06-04 07:26:57,227 | INFO     | sum of square deviations: 379799333.28972006
[2025-06-04 03:27:12] 2025-06-04 07:26:57,228 | INFO     | sum of deviations: -29714985811.401882
[2025-06-04 03:27:12] 2025-06-04 07:26:57,228 | INFO     | mean x: 1749018746.3831775
[2025-06-04 03:27:12] 2025-06-04 07:26:57,228 | INFO     | mean y: 2343222.887850467
[2025-06-04 03:27:12] 2025-06-04 07:26:57,228 | INFO     | -- intersect: 136843202795.97847
[2025-06-04 03:27:12] 2025-06-04 07:26:57,228 | INFO     | intersect: 136843202795.97847
[2025-06-04 03:27:12] 2025-06-04 07:26:57,228 | INFO     | chi2: 0.9887722326784638
[2025-06-04 03:27:12] 2025-06-04 07:26:57,228 | INFO     | current chi2=0.9887722326784638 (change=47.15557226198636 %)
[2025-06-04 03:27:12] 2025-06-04 07:26:57,228 | INFO     | sum of square deviations: 328992279.8137257
[2025-06-04 03:27:12] 2025-06-04 07:26:57,229 | INFO     | sum of deviations: -28989354429.31372
[2025-06-04 03:27:12] 2025-06-04 07:26:57,229 | INFO     | mean x: 1749018898.8921568
[2025-06-04 03:27:12] 2025-06-04 07:26:57,229 | INFO     | mean y: 2340802.6078431373
[2025-06-04 03:27:12] 2025-06-04 07:26:57,229 | INFO     | -- intersect: 154118202707.5151
[2025-06-04 03:27:12] 2025-06-04 07:26:57,229 | INFO     | intersect: 154118202707.5151
[2025-06-04 03:27:12] 2025-06-04 07:26:57,229 | INFO     | chi2: 0.9357148368487731
[2025-06-04 03:27:12] 2025-06-04 07:26:57,229 | INFO     | current chi2=0.9357148368487731 (change=5.365987643682577 %)
[2025-06-04 03:27:12] 2025-06-04 07:26:57,229 | INFO     | left removable region: 30
[2025-06-04 03:27:12] 2025-06-04 07:26:57,229 | INFO     | sum of square deviations: 164755291.1358022
[2025-06-04 03:27:12] 2025-06-04 07:26:57,229 | INFO     | sum of deviations: -8009397568.024688
[2025-06-04 03:27:12] 2025-06-04 07:26:57,230 | INFO     | mean x: 1749019173.382716
[2025-06-04 03:27:12] 2025-06-04 07:26:57,230 | INFO     | mean y: 2313521.839506173
[2025-06-04 03:27:12] 2025-06-04 07:26:57,230 | INFO     | -- intersect: 85028960114.77513
[2025-06-04 03:27:12] 2025-06-04 07:26:57,230 | INFO     | intersect: 85028960114.77513
[2025-06-04 03:27:12] 2025-06-04 07:26:57,230 | INFO     | chi2: 0.17898400413209034
[2025-06-04 03:27:12] 2025-06-04 07:26:57,230 | INFO     | -- intersect: 85028960114.77513
[2025-06-04 03:27:12] 2025-06-04 07:26:57,230 | INFO     | current memory leak: -48.61 B/s (using 81 data points, chi2=0.18)
[2025-06-04 03:27:12] 2025-06-04 07:26:57,230 | INFO     | ..............................
[2025-06-04 03:27:12] 2025-06-04 07:26:57,231 | INFO     | . Timing measurements:
[2025-06-04 03:27:12] 2025-06-04 07:26:57,231 | INFO     | . get job = 0 s
[2025-06-04 03:27:12] 2025-06-04 07:26:57,231 | INFO     | . initial setup = 2 s
[2025-06-04 03:27:12] 2025-06-04 07:26:57,231 | INFO     | . payload setup = 7 s
[2025-06-04 03:27:12] 2025-06-04 07:26:57,231 | INFO     | . stage-in = 0 s
[2025-06-04 03:27:12] 2025-06-04 07:26:57,231 | INFO     | . payload execution = 7105 s
[2025-06-04 03:27:12] 2025-06-04 07:26:57,231 | INFO     | . stage-out = 0 s
[2025-06-04 03:27:12] 2025-06-04 07:26:57,231 | INFO     | . log creation = 0 s
[2025-06-04 03:27:12] 2025-06-04 07:26:57,231 | INFO     | ..............................
[2025-06-04 03:27:12] 2025-06-04 07:26:57,326 | INFO     | 
[2025-06-04 03:27:12] 2025-06-04 07:26:57,326 | INFO     | job summary report
[2025-06-04 03:27:12] 2025-06-04 07:26:57,327 | INFO     | --------------------------------------------------
[2025-06-04 03:27:12] 2025-06-04 07:26:57,327 | INFO     | PanDA job id: 6678217975
[2025-06-04 03:27:12] 2025-06-04 07:26:57,327 | INFO     | task id: 45006595
[2025-06-04 03:27:12] 2025-06-04 07:26:57,327 | INFO     | errors: (none)
[2025-06-04 03:27:12] 2025-06-04 07:26:57,327 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 03:27:12] 2025-06-04 07:26:57,327 | INFO     | pilot state: finished 
[2025-06-04 03:27:12] 2025-06-04 07:26:57,327 | INFO     | transexitcode: 0
[2025-06-04 03:27:12] 2025-06-04 07:26:57,327 | INFO     | exeerrorcode: 0
[2025-06-04 03:27:12] 2025-06-04 07:26:57,327 | INFO     | exeerrordiag: 
[2025-06-04 03:27:12] 2025-06-04 07:26:57,328 | INFO     | exitcode: 0
[2025-06-04 03:27:12] 2025-06-04 07:26:57,328 | INFO     | exitmsg: OK
[2025-06-04 03:27:12] 2025-06-04 07:26:57,328 | INFO     | cpuconsumptiontime: 43488 s
[2025-06-04 03:27:12] 2025-06-04 07:26:57,328 | INFO     | nevents: 400
[2025-06-04 03:27:12] 2025-06-04 07:26:57,328 | INFO     | neventsw: 0
[2025-06-04 03:27:12] 2025-06-04 07:26:57,328 | INFO     | pid: 4071297
[2025-06-04 03:27:12] 2025-06-04 07:26:57,328 | INFO     | pgrp: 4071297
[2025-06-04 03:27:12] 2025-06-04 07:26:57,328 | INFO     | corecount: 10
[2025-06-04 03:27:12] 2025-06-04 07:26:57,328 | INFO     | event service: False
[2025-06-04 03:27:12] 2025-06-04 07:26:57,328 | INFO     | sizes: {0: 2405011, 1: 2405210, 5: 2405416, 12: 2405472, 7116: 2432645, 7117: 2441586, 7121: 2441770, 7126: 2441940}
[2025-06-04 03:27:12] 2025-06-04 07:26:57,329 | INFO     | --------------------------------------------------
[2025-06-04 03:27:12] 2025-06-04 07:26:57,329 | INFO     | 
[2025-06-04 03:27:12] 2025-06-04 07:26:57,329 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 03:27:12] 2025-06-04 07:26:57,345 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,345 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,346 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,346 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,346 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,346 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,346 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,346 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,346 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,346 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,347 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,347 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,347 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,347 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,347 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,347 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,347 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,347 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 03:27:12] 2025-06-04 07:26:57,347 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,348 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 03:27:12] 2025-06-04 07:26:57,348 | INFO     | job 6678217975 has completed (purged errors)
[2025-06-04 03:27:12] 2025-06-04 07:26:57,348 | INFO     | overall cleanup function is called
[2025-06-04 03:27:12] 2025-06-04 07:26:58,006 | INFO     | 7145s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-04 03:27:12] 2025-06-04 07:26:58,356 | INFO     | --- collectZombieJob: --- 10, [4071297]
[2025-06-04 03:27:12] 2025-06-04 07:26:58,356 | INFO     | zombie collector waiting for pid 4071297
[2025-06-04 03:27:12] 2025-06-04 07:26:58,357 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 03:27:12] 2025-06-04 07:26:58,357 | INFO     | collected zombie processes
[2025-06-04 03:27:12] 2025-06-04 07:26:58,357 | INFO     | will attempt to kill all subprocesses of pid=4071297
[2025-06-04 03:27:12] 2025-06-04 07:26:58,784 | INFO     | process IDs to be killed: [4071297] (in reverse order)
[2025-06-04 03:27:12] 2025-06-04 07:26:58,901 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 03:27:12] 2025-06-04 07:26:58,901 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 03:27:12] 2025-06-04 07:26:58,917 | INFO     | did not find any defunct processes belonging to 4071297
[2025-06-04 03:27:12] 2025-06-04 07:26:58,933 | INFO     | did not find any defunct processes belonging to 4071297
[2025-06-04 03:27:12] 2025-06-04 07:26:58,933 | INFO     | ready for new job
[2025-06-04 03:27:12] 2025-06-04 07:26:58,933 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 03:27:12] 2025-06-04 07:26:58,935 | INFO     | **************************************
[2025-06-04 03:27:12] 2025-06-04 07:26:58,935 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 03:27:12] 2025-06-04 07:26:58,935 | INFO     | **************************************
[2025-06-04 03:27:12] 2025-06-04 07:26:58,935 | INFO     | 
[2025-06-04 03:27:12] 2025-06-04 07:26:58,949 | INFO     | architecture information:
[2025-06-04 03:27:12] 2025-06-04 07:26:58,950 | INFO     | executing command: cat /etc/os-release
[2025-06-04 03:27:12] 2025-06-04 07:26:58,965 | INFO     | cat /etc/os-release:
[2025-06-04 03:27:12] NAME="CentOS Linux"
[2025-06-04 03:27:12] VERSION="7 (Core)"
[2025-06-04 03:27:12] ID="centos"
[2025-06-04 03:27:12] ID_LIKE="rhel fedora"
[2025-06-04 03:27:12] VERSION_ID="7"
[2025-06-04 03:27:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 03:27:12] ANSI_COLOR="0;31"
[2025-06-04 03:27:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 03:27:12] HOME_URL="https://www.centos.org/"
[2025-06-04 03:27:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 03:27:12] 
[2025-06-04 03:27:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 03:27:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 03:27:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 03:27:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 03:27:12] 
[2025-06-04 03:27:12] 2025-06-04 07:26:58,965 | INFO     | **************************************
[2025-06-04 03:27:12] 2025-06-04 07:26:59,467 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 03:27:12] 2025-06-04 07:26:59,491 | INFO     | sufficient remaining disk space (76589039616 B)
[2025-06-04 03:27:12] 2025-06-04 07:26:59,492 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 03:27:12] 2025-06-04 07:26:59,492 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 03:27:12] 2025-06-04 07:26:59,493 | INFO     | update_server=False
[2025-06-04 03:27:12] 2025-06-04 07:26:59,493 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 03:27:12] 2025-06-04 07:26:59,493 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 03:27:12] 2025-06-04 07:26:59,494 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 03:27:12] 2025-06-04 07:26:59,494 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 03:27:12] 2025-06-04 07:26:59,494 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 03:27:12] 2025-06-04 07:26:59,495 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 03:27:12] 2025-06-04 07:26:59,678 | INFO     | all payload control threads have been joined
[2025-06-04 03:27:12] 2025-06-04 07:26:59,697 | INFO     | all job control threads have been joined
[2025-06-04 03:27:12] 2025-06-04 07:26:59,930 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 03:27:12] 2025-06-04 07:26:59,930 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 03:27:12] 2025-06-04 07:26:59,931 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:27:12] 2025-06-04 07:26:59,931 | INFO     | will abort loop
[2025-06-04 03:27:12] 2025-06-04 07:27:00,198 | INFO     | all data control threads have been joined
[2025-06-04 03:27:12] 2025-06-04 07:27:00,499 | INFO     | [job] retrieve thread has finished
[2025-06-04 03:27:12] 2025-06-04 07:27:00,684 | INFO     | [payload] control thread has finished
[2025-06-04 03:27:12] 2025-06-04 07:27:00,703 | INFO     | [job] control thread has finished
[2025-06-04 03:27:12] 2025-06-04 07:27:00,792 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 03:27:12] 2025-06-04 07:27:00,940 | INFO     | [job] job monitor thread has finished
[2025-06-04 03:27:12] 2025-06-04 07:27:01,173 | INFO     | [payload] failed_post thread has finished
[2025-06-04 03:27:12] 2025-06-04 07:27:01,203 | INFO     | [data] control thread has finished
[2025-06-04 03:27:12] 2025-06-04 07:27:01,205 | INFO     | [job] validate thread has finished
[2025-06-04 03:27:12] 2025-06-04 07:27:01,225 | INFO     | [data] copytool_in thread has finished
[2025-06-04 03:27:12] 2025-06-04 07:27:01,424 | INFO     | [payload] validate_post thread has finished
[2025-06-04 03:27:12] 2025-06-04 07:27:01,437 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 03:27:12] 2025-06-04 07:27:01,501 | INFO     | [data] copytool_out thread has finished
[2025-06-04 03:27:12] 2025-06-04 07:27:01,502 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 03:27:12] 2025-06-04 07:27:01,853 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 03:27:12] 2025-06-04 07:27:02,306 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:27:12] 2025-06-04 07:27:02,621 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 03:27:12] 2025-06-04 07:27:03,311 | INFO     | [job] queue monitor thread has finished
[2025-06-04 03:27:12] 2025-06-04 07:27:06,628 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 03:27:12] 2025-06-04 07:27:06,824 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140488924858176)>', '<ExcThread(monitor, started 140488287962880)>']
[2025-06-04 03:27:12] 2025-06-04 07:27:07,535 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 03:27:12] 2025-06-04 07:27:07,536 | INFO     | [monitor] control thread has ended
[2025-06-04 03:27:12] 2025-06-04 07:27:11,849 | INFO     | all workflow threads have been joined
[2025-06-04 03:27:12] 2025-06-04 07:27:11,849 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 03:27:12] 2025-06-04 07:27:11,850 | INFO     | traces error code: 0
[2025-06-04 03:27:12] 2025-06-04 07:27:11,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 03:27:12] 2025-06-04 07:27:11,976 [wrapper] ==== pilot stdout END ====
[2025-06-04 03:27:12] 2025-06-04 07:27:11,979 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 03:27:12] 2025-06-04 07:27:11,982 [wrapper] pilotpid: 4064729
[2025-06-04 03:27:12] 2025-06-04 07:27:11,984 [wrapper] Pilot exit status: 0
[2025-06-04 03:27:12] 2025-06-04 07:27:11,995 [wrapper] pandaids: 6678217975
[2025-06-04 03:27:12] 2025-06-04 07:27:12,076 [wrapper] cleanup supervisor_pilot  552405 4064730
[2025-06-04 03:27:12] 2025-06-04 07:27:12,080 [wrapper] Test setup, not cleaning
[2025-06-04 03:27:12] 2025-06-04 07:27:12,082 [wrapper] apfmon messages muted
[2025-06-04 03:27:12] 2025-06-04 07:27:12,085 [wrapper] ==== wrapper stdout END ====
[2025-06-04 03:27:12] 2025-06-04 07:27:12,088 [wrapper] ==== wrapper stderr END ====
[2025-06-04 03:27:12]  *** Error codes and diagnostics ***
[2025-06-04 03:27:12]     "exeErrorCode": 0,
[2025-06-04 03:27:12]     "exeErrorDiag": "",
[2025-06-04 03:27:12]     "pilotErrorCode": 0,
[2025-06-04 03:27:12]     "pilotErrorDiag": "",
[2025-06-04 03:27:12]  *** Listing of results directory ***
[2025-06-04 03:27:12] total 395412
[2025-06-04 03:27:12] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 19:58 pilot3.tar.gz
[2025-06-04 03:27:12] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 20:43 queuedata.json
[2025-06-04 03:27:12] -rwx------. 1 boincer umatlas     37140 Jun  3 20:45 runpilot2-wrapper.sh
[2025-06-04 03:27:12] -rw-r--r--. 1 boincer umatlas       100 Jun  4 01:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 03:27:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 01:27 run_atlas
[2025-06-04 03:27:12] -rw-r--r--. 1 boincer umatlas       105 Jun  4 01:27 job.xml
[2025-06-04 03:27:12] -rw-r--r--. 2 boincer umatlas 217286534 Jun  4 01:27 EVNT.45006593._001972.pool.root.1
[2025-06-04 03:27:12] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 01:27 start_atlas.sh
[2025-06-04 03:27:12] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 01:27 shared
[2025-06-04 03:27:12] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 01:27 input.tar.gz
[2025-06-04 03:27:12] -rw-r--r--. 1 boincer umatlas         0 Jun  4 01:27 boinc_lockfile
[2025-06-04 03:27:12] -rw-r--r--. 1 boincer umatlas      2524 Jun  4 01:27 pandaJob.out
[2025-06-04 03:27:12] -rw-------. 1 boincer umatlas    986745 Jun  4 01:27 agis_schedconf.cvmfs.json
[2025-06-04 03:27:12] -rw-------. 1 boincer umatlas   1603667 Jun  4 01:27 agis_ddmendpoints.agis.ALL.json
[2025-06-04 03:27:12] drwx------. 4 boincer umatlas      4096 Jun  4 01:27 pilot3
[2025-06-04 03:27:12] -rw-r--r--. 1 boincer umatlas      6658 Jun  4 03:22 init_data.xml
[2025-06-04 03:27:12] -rw-r--r--. 1 boincer umatlas       530 Jun  4 03:26 boinc_task_state.xml
[2025-06-04 03:27:12] -rw-------. 1 boincer umatlas 181786246 Jun  4 03:26 HITS.45006595._049156.pool.root.1
[2025-06-04 03:27:12] -rw-------. 1 boincer umatlas      1040 Jun  4 03:26 memory_monitor_summary.json
[2025-06-04 03:27:12] -rw-------. 1 boincer umatlas    346123 Jun  4 03:26 log.45006595._049156.job.log.tgz.1
[2025-06-04 03:27:12] -rw-------. 1 boincer umatlas        95 Jun  4 03:26 pilot_heartbeat.json
[2025-06-04 03:27:12] -rw-------. 1 boincer umatlas      7714 Jun  4 03:26 heartbeat.json
[2025-06-04 03:27:12] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 03:27 boinc_mmap_file
[2025-06-04 03:27:12] -rw-r--r--. 1 boincer umatlas        27 Jun  4 03:27 wrapper_checkpoint.txt
[2025-06-04 03:27:12] -rw-------. 1 boincer umatlas      4662 Jun  4 03:27 pilotlog.txt
[2025-06-04 03:27:12] -rw-------. 1 boincer umatlas    650244 Jun  4 03:27 log.45006595._049156.job.log.1
[2025-06-04 03:27:12] -rw-------. 1 boincer umatlas       357 Jun  4 03:27 output.list
[2025-06-04 03:27:12] -rw-r--r--. 1 boincer umatlas       620 Jun  4 03:27 runtime_log
[2025-06-04 03:27:12] -rw-------. 1 boincer umatlas   1013760 Jun  4 03:27 result.tar.gz
[2025-06-04 03:27:12] -rw-r--r--. 1 boincer umatlas      8646 Jun  4 03:27 runtime_log.err
[2025-06-04 03:27:12] -rw-------. 1 boincer umatlas       650 Jun  4 03:27 6zONDmbRrg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsfmKDmRQi6zm.diag
[2025-06-04 03:27:12] -rw-r--r--. 1 boincer umatlas     20947 Jun  4 03:27 stderr.txt
[2025-06-04 03:27:12] HITS file was successfully produced:
[2025-06-04 03:27:12] -rw-------. 1 boincer umatlas 181786246 Jun  4 03:26 shared/HITS.pool.root.1
[2025-06-04 03:27:12]  *** Contents of shared directory: ***
[2025-06-04 03:27:12] total 391240
[2025-06-04 03:27:12] -rw-r--r--. 2 boincer umatlas 217286534 Jun  4 01:27 ATLAS.root_0
[2025-06-04 03:27:12] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 01:27 start_atlas.sh
[2025-06-04 03:27:12] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 01:27 input.tar.gz
[2025-06-04 03:27:12] -rw-------. 1 boincer umatlas 181786246 Jun  4 03:26 HITS.pool.root.1
[2025-06-04 03:27:12] -rw-------. 1 boincer umatlas   1013760 Jun  4 03:27 result.tar.gz
03:27:34 (4061157): run_atlas exited; CPU time 43759.966718
03:27:34 (4061157): called boinc_finish(0)

</stderr_txt>
]]>

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