Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
23:47:00 (660682): wrapper (7.7.26015): starting
23:47:00 (660682): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 23:47:00] Arguments: --nthreads 12
[2025-06-05 23:47:00] Threads: 12
[2025-06-05 23:47:00] Checking for CVMFS
[2025-06-05 23:47:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 23:47:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 23:47:00] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 23:47:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 23:47:01] 2.12.7.0 4529 1587 43792 146836 0 56 2384916 4096000 19 130560 0 1839743 99.993 396439 145 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-05 23:47:01] CVMFS is ok
[2025-06-05 23:47:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 23:47:01] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-05 23:47:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-05 23:47:01] Further information can be found at the LHC@home message board.
[2025-06-05 23:47:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 23:47:01] Checking for apptainer binary...
[2025-06-05 23:47:01] apptainer is not installed, using version from CVMFS
[2025-06-05 23:47:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 23:47:01] martinpcalt
[2025-06-05 23:47:01] apptainer works
[2025-06-05 23:47:01] Set ATHENA_PROC_NUMBER=12
[2025-06-05 23:47:01] Set ATHENA_CORE_NUMBER=12
[2025-06-05 23:47:01] Starting ATLAS job with PandaID=6678215883
[2025-06-05 23:47:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 02:05:12]  *** The last 200 lines of the pilot log: ***
[2025-06-06 02:05:12] 2025-06-06 02:04:52,256 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 02:05:12] 2025-06-06 02:04:52,256 | INFO     | log transfer has been attempted: DONE
[2025-06-06 02:05:12] 2025-06-06 02:04:52,256 | INFO     | job 6678215883 has finished - writing final server update
[2025-06-06 02:05:12] 2025-06-06 02:04:52,256 | INFO     | total number of processed events: 400 (read)
[2025-06-06 02:05:12] 2025-06-06 02:04:52,257 | INFO     | executing command: lscpu
[2025-06-06 02:05:12] 2025-06-06 02:04:52,264 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 02:05:12] 2025-06-06 02:04:53,428 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 02:05:12] 2025-06-06 02:04:53,429 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6678215883/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 02:05:12] 2025-06-06 02:04:53,429 | INFO     | extracted standard info from prmon json
[2025-06-06 02:05:12] 2025-06-06 02:04:53,429 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 02:05:12] 2025-06-06 02:04:53,429 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 02:05:12] 2025-06-06 02:04:53,429 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 02:05:12] 2025-06-06 02:04:53,429 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 02:05:12] 2025-06-06 02:04:53,430 | INFO     | fitting pss+swap vs Time
[2025-06-06 02:05:12] 2025-06-06 02:04:53,430 | INFO     | sum of square deviations: 762879420.0
[2025-06-06 02:05:12] 2025-06-06 02:04:53,431 | INFO     | sum of deviations: 9120808084.0
[2025-06-06 02:05:12] 2025-06-06 02:04:53,431 | INFO     | mean x: 1749171341.0
[2025-06-06 02:05:12] 2025-06-06 02:04:53,431 | INFO     | mean y: 2673404.548148148
[2025-06-06 02:05:12] 2025-06-06 02:04:53,431 | INFO     | -- intersect: -20910010420.75929
[2025-06-06 02:05:12] 2025-06-06 02:04:53,431 | INFO     | intersect: -20910010420.75929
[2025-06-06 02:05:12] 2025-06-06 02:04:53,431 | INFO     | chi2: 1.4713863289135616
[2025-06-06 02:05:12] 2025-06-06 02:04:53,431 | INFO     | sum of square deviations: 681212772.5
[2025-06-06 02:05:12] 2025-06-06 02:04:53,431 | INFO     | sum of deviations: 8660373983.999998
[2025-06-06 02:05:12] 2025-06-06 02:04:53,431 | INFO     | mean x: 1749171188.5
[2025-06-06 02:05:12] 2025-06-06 02:04:53,431 | INFO     | mean y: 2672550.4615384615
[2025-06-06 02:05:12] 2025-06-06 02:04:53,431 | INFO     | -- intersect: -22234838644.24783
[2025-06-06 02:05:12] 2025-06-06 02:04:53,432 | INFO     | intersect: -22234838644.24783
[2025-06-06 02:05:12] 2025-06-06 02:04:53,432 | INFO     | chi2: 1.4729178842833985
[2025-06-06 02:05:12] 2025-06-06 02:04:53,432 | INFO     | current chi2=1.4729178842833985 (change=-0.10408927551799552 %)
[2025-06-06 02:05:12] 2025-06-06 02:04:53,432 | INFO     | right removable region: 129
[2025-06-06 02:05:12] 2025-06-06 02:04:53,432 | INFO     | sum of square deviations: 681212772.5
[2025-06-06 02:05:12] 2025-06-06 02:04:53,432 | INFO     | sum of deviations: -11228069614.999994
[2025-06-06 02:05:12] 2025-06-06 02:04:53,432 | INFO     | mean x: 1749171493.5
[2025-06-06 02:05:12] 2025-06-06 02:04:53,432 | INFO     | mean y: 2710668.876923077
[2025-06-06 02:05:12] 2025-06-06 02:04:53,432 | INFO     | -- intersect: 28833378692.782055
[2025-06-06 02:05:12] 2025-06-06 02:04:53,432 | INFO     | intersect: 28833378692.782055
[2025-06-06 02:05:12] 2025-06-06 02:04:53,432 | INFO     | chi2: 0.049917720368281106
[2025-06-06 02:05:12] 2025-06-06 02:04:53,432 | INFO     | current chi2=0.049917720368281106 (change=96.6074361717674 %)
[2025-06-06 02:05:12] 2025-06-06 02:04:53,432 | INFO     | sum of square deviations: 605592750.0
[2025-06-06 02:05:12] 2025-06-06 02:04:53,433 | INFO     | sum of deviations: -9246869159.000002
[2025-06-06 02:05:12] 2025-06-06 02:04:53,433 | INFO     | mean x: 1749171646.0
[2025-06-06 02:05:12] 2025-06-06 02:04:53,433 | INFO     | mean y: 2706656.04
[2025-06-06 02:05:12] 2025-06-06 02:04:53,433 | INFO     | -- intersect: 26711020695.788113
[2025-06-06 02:05:12] 2025-06-06 02:04:53,433 | INFO     | intersect: 26711020695.788113
[2025-06-06 02:05:12] 2025-06-06 02:04:53,433 | INFO     | chi2: 0.04866761834308058
[2025-06-06 02:05:12] 2025-06-06 02:04:53,433 | INFO     | current chi2=0.04866761834308058 (change=2.504325149421025 %)
[2025-06-06 02:05:12] 2025-06-06 02:04:53,433 | INFO     | left removable region: 20
[2025-06-06 02:05:12] 2025-06-06 02:04:53,433 | INFO     | sum of square deviations: 401533110.0
[2025-06-06 02:05:12] 2025-06-06 02:04:53,433 | INFO     | sum of deviations: -3737076915.9999995
[2025-06-06 02:05:12] 2025-06-06 02:04:53,433 | INFO     | mean x: 1749171768.0
[2025-06-06 02:05:12] 2025-06-06 02:04:53,433 | INFO     | mean y: 2694000.5779816513
[2025-06-06 02:05:12] 2025-06-06 02:04:53,433 | INFO     | -- intersect: 16282271633.196388
[2025-06-06 02:05:12] 2025-06-06 02:04:53,433 | INFO     | intersect: 16282271633.196388
[2025-06-06 02:05:12] 2025-06-06 02:04:53,433 | INFO     | chi2: 0.03265489191809162
[2025-06-06 02:05:12] 2025-06-06 02:04:53,434 | INFO     | -- intersect: 16282271633.196388
[2025-06-06 02:05:12] 2025-06-06 02:04:53,434 | INFO     | current memory leak: -9.31 B/s (using 109 data points, chi2=0.03)
[2025-06-06 02:05:12] 2025-06-06 02:04:53,434 | INFO     | ..............................
[2025-06-06 02:05:12] 2025-06-06 02:04:53,434 | INFO     | . Timing measurements:
[2025-06-06 02:05:12] 2025-06-06 02:04:53,434 | INFO     | . get job = 0 s
[2025-06-06 02:05:12] 2025-06-06 02:04:53,434 | INFO     | . initial setup = 1 s
[2025-06-06 02:05:12] 2025-06-06 02:04:53,434 | INFO     | . payload setup = 13 s
[2025-06-06 02:05:12] 2025-06-06 02:04:53,434 | INFO     | . stage-in = 0 s
[2025-06-06 02:05:12] 2025-06-06 02:04:53,434 | INFO     | . payload execution = 8233 s
[2025-06-06 02:05:12] 2025-06-06 02:04:53,434 | INFO     | . stage-out = 0 s
[2025-06-06 02:05:12] 2025-06-06 02:04:53,434 | INFO     | . log creation = 0 s
[2025-06-06 02:05:12] 2025-06-06 02:04:53,434 | INFO     | ..............................
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | 
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | job summary report
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | --------------------------------------------------
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | PanDA job id: 6678215883
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | task id: 45006595
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | errors: (none)
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | pilot state: finished 
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | transexitcode: 0
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | exeerrorcode: 0
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | exeerrordiag: 
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | exitcode: 0
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | exitmsg: OK
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | cpuconsumptiontime: 28592 s
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | nevents: 400
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | neventsw: 0
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | pid: 679800
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | pgrp: 679800
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | corecount: 12
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | event service: False
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | sizes: {0: 2396508, 1: 2397387, 2: 2397593, 11: 2397621, 8250: 2425198, 8251: 2434185, 8254: 2434369, 8255: 2434539}
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | --------------------------------------------------
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | 
[2025-06-06 02:05:12] 2025-06-06 02:04:53,468 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-06 02:05:12] 2025-06-06 02:04:53,476 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,476 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,476 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | job 6678215883 has completed (purged errors)
[2025-06-06 02:05:12] 2025-06-06 02:04:53,477 | INFO     | overall cleanup function is called
[2025-06-06 02:05:12] 2025-06-06 02:04:54,483 | INFO     | --- collectZombieJob: --- 10, [679800]
[2025-06-06 02:05:12] 2025-06-06 02:04:54,483 | INFO     | zombie collector waiting for pid 679800
[2025-06-06 02:05:12] 2025-06-06 02:04:54,483 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 02:05:12] 2025-06-06 02:04:54,483 | INFO     | collected zombie processes
[2025-06-06 02:05:12] 2025-06-06 02:04:54,483 | INFO     | will attempt to kill all subprocesses of pid=679800
[2025-06-06 02:05:12] 2025-06-06 02:04:54,511 | INFO     | process IDs to be killed: [679800] (in reverse order)
[2025-06-06 02:05:12] 2025-06-06 02:04:54,525 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 02:05:12] 2025-06-06 02:04:54,525 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 02:05:12] 2025-06-06 02:04:54,526 | INFO     | did not find any defunct processes belonging to 679800
[2025-06-06 02:05:12] 2025-06-06 02:04:54,526 | INFO     | did not find any defunct processes belonging to 679800
[2025-06-06 02:05:12] 2025-06-06 02:04:54,526 | INFO     | ready for new job
[2025-06-06 02:05:12] 2025-06-06 02:04:54,527 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 02:05:12] 2025-06-06 02:04:54,527 | INFO     | **************************************
[2025-06-06 02:05:12] 2025-06-06 02:04:54,527 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 02:05:12] 2025-06-06 02:04:54,527 | INFO     | **************************************
[2025-06-06 02:05:12] 2025-06-06 02:04:54,527 | INFO     | 
[2025-06-06 02:05:12] 2025-06-06 02:04:54,544 | INFO     | architecture information:
[2025-06-06 02:05:12] 2025-06-06 02:04:54,544 | INFO     | executing command: cat /etc/os-release
[2025-06-06 02:05:12] 2025-06-06 02:04:54,548 | INFO     | cat /etc/os-release:
[2025-06-06 02:05:12] NAME="CentOS Linux"
[2025-06-06 02:05:12] VERSION="7 (Core)"
[2025-06-06 02:05:12] ID="centos"
[2025-06-06 02:05:12] ID_LIKE="rhel fedora"
[2025-06-06 02:05:12] VERSION_ID="7"
[2025-06-06 02:05:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 02:05:12] ANSI_COLOR="0;31"
[2025-06-06 02:05:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 02:05:12] HOME_URL="https://www.centos.org/"
[2025-06-06 02:05:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 02:05:12] 
[2025-06-06 02:05:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 02:05:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 02:05:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 02:05:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 02:05:12] 
[2025-06-06 02:05:12] 2025-06-06 02:04:54,548 | INFO     | **************************************
[2025-06-06 02:05:12] 2025-06-06 02:04:55,051 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-06 02:05:12] 2025-06-06 02:04:55,057 | INFO     | sufficient remaining disk space (276663631872 B)
[2025-06-06 02:05:12] 2025-06-06 02:04:55,057 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 02:05:12] 2025-06-06 02:04:55,057 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 02:05:12] 2025-06-06 02:04:55,057 | INFO     | update_server=False
[2025-06-06 02:05:12] 2025-06-06 02:04:55,057 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 02:05:12] 2025-06-06 02:04:55,058 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 02:05:12] 2025-06-06 02:04:55,058 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 02:05:12] 2025-06-06 02:04:55,058 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 02:05:12] 2025-06-06 02:04:55,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 02:05:12] 2025-06-06 02:04:55,058 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 02:05:12] 2025-06-06 02:04:55,058 | INFO     | aborting loop
[2025-06-06 02:05:12] 2025-06-06 02:04:55,058 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 02:05:12] 2025-06-06 02:04:55,058 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 02:05:12] 2025-06-06 02:04:55,623 | INFO     | all data control threads have been joined
[2025-06-06 02:05:12] 2025-06-06 02:04:55,866 | INFO     | all job control threads have been joined
[2025-06-06 02:05:12] 2025-06-06 02:04:56,059 | INFO     | [job] queue monitor thread has finished
[2025-06-06 02:05:12] 2025-06-06 02:04:56,060 | INFO     | [job] retrieve thread has finished
[2025-06-06 02:05:12] 2025-06-06 02:04:56,060 | INFO     | [job] job monitor thread has finished
[2025-06-06 02:05:12] 2025-06-06 02:04:56,319 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 02:05:12] 2025-06-06 02:04:56,472 | INFO     | all payload control threads have been joined
[2025-06-06 02:05:12] 2025-06-06 02:04:56,518 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 02:05:12] 2025-06-06 02:04:56,629 | INFO     | [data] control thread has finished
[2025-06-06 02:05:12] 2025-06-06 02:04:56,773 | INFO     | [payload] failed_post thread has finished
[2025-06-06 02:05:12] 2025-06-06 02:04:56,871 | INFO     | [job] control thread has finished
[2025-06-06 02:05:12] 2025-06-06 02:04:57,063 | INFO     | [data] copytool_out thread has finished
[2025-06-06 02:05:12] 2025-06-06 02:04:57,324 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 02:05:12] 2025-06-06 02:04:57,328 | INFO     | [data] copytool_in thread has finished
[2025-06-06 02:05:12] 2025-06-06 02:04:57,466 | INFO     | [job] validate thread has finished
[2025-06-06 02:05:12] 2025-06-06 02:04:57,476 | INFO     | [payload] control thread has finished
[2025-06-06 02:05:12] 2025-06-06 02:04:57,566 | INFO     | [payload] validate_post thread has finished
[2025-06-06 02:05:12] 2025-06-06 02:04:58,261 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 02:05:12] 2025-06-06 02:05:02,264 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 02:05:12] 2025-06-06 02:05:05,459 | INFO     | job.realtimelogging is not enabled
[2025-06-06 02:05:12] 2025-06-06 02:05:06,465 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 02:05:12] 2025-06-06 02:05:07,704 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140650785048384)>', '<ExcThread(monitor, started 140650330691328)>']
[2025-06-06 02:05:12] 2025-06-06 02:05:08,121 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 02:05:12] 2025-06-06 02:05:08,121 | INFO     | [monitor] control thread has ended
[2025-06-06 02:05:12] 2025-06-06 02:05:12,728 | INFO     | all workflow threads have been joined
[2025-06-06 02:05:12] 2025-06-06 02:05:12,728 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 02:05:12] 2025-06-06 02:05:12,728 | INFO     | traces error code: 0
[2025-06-06 02:05:12] 2025-06-06 02:05:12,728 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 02:05:12] 2025-06-06 02:05:12,806 [wrapper] ==== pilot stdout END ====
[2025-06-06 02:05:12] 2025-06-06 02:05:12,807 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 02:05:12] 2025-06-06 02:05:12,808 [wrapper] pilotpid: 666845
[2025-06-06 02:05:12] 2025-06-06 02:05:12,809 [wrapper] Pilot exit status: 0
[2025-06-06 02:05:12] 2025-06-06 02:05:12,827 [wrapper] pandaids: 6678215883
[2025-06-06 02:05:12] 2025-06-06 02:05:12,837 [wrapper] cleanup supervisor_pilot  710821 666846
[2025-06-06 02:05:12] 2025-06-06 02:05:12,838 [wrapper] Test setup, not cleaning
[2025-06-06 02:05:12] 2025-06-06 02:05:12,840 [wrapper] apfmon messages muted
[2025-06-06 02:05:12] 2025-06-06 02:05:12,841 [wrapper] ==== wrapper stdout END ====
[2025-06-06 02:05:12] 2025-06-06 02:05:12,842 [wrapper] ==== wrapper stderr END ====
[2025-06-06 02:05:12]  *** Error codes and diagnostics ***
[2025-06-06 02:05:12]     "exeErrorCode": 0,
[2025-06-06 02:05:12]     "exeErrorDiag": "",
[2025-06-06 02:05:12]     "pilotErrorCode": 0,
[2025-06-06 02:05:12]     "pilotErrorDiag": "",
[2025-06-06 02:05:12]  *** Listing of results directory ***
[2025-06-06 02:05:12] total 389564
[2025-06-06 02:05:12] -rw-r--r-- 1 boinc boinc    495897 Jun  3 23:58 pilot3.tar.gz
[2025-06-06 02:05:12] -rw-r--r-- 1 boinc boinc      5111 Jun  4 00:36 queuedata.json
[2025-06-06 02:05:12] -rwx------ 1 boinc boinc     37140 Jun  4 00:38 runpilot2-wrapper.sh
[2025-06-06 02:05:12] -rw-rw-r-- 1 boinc boinc       100 Jun  5 23:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 02:05:12] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 23:46 run_atlas
[2025-06-06 02:05:12] -rw-rw-r-- 1 boinc boinc       105 Jun  5 23:46 job.xml
[2025-06-06 02:05:12] -rw-r--r-- 2 boinc boinc 213340469 Jun  5 23:47 EVNT.45006593._001970.pool.root.1
[2025-06-06 02:05:12] -rw-rw-r-- 1 boinc boinc      9334 Jun  5 23:47 init_data.xml
[2025-06-06 02:05:12] drwxrwx--x 2 boinc boinc      4096 Jun  5 23:47 shared
[2025-06-06 02:05:12] -rw-r--r-- 2 boinc boinc    508885 Jun  5 23:47 input.tar.gz
[2025-06-06 02:05:12] -rw-r--r-- 2 boinc boinc     15093 Jun  5 23:47 start_atlas.sh
[2025-06-06 02:05:12] -rw-rw-r-- 1 boinc boinc         0 Jun  5 23:47 boinc_lockfile
[2025-06-06 02:05:12] -rw-rw-r-- 1 boinc boinc      2522 Jun  5 23:47 pandaJob.out
[2025-06-06 02:05:12] -rw------- 1 boinc boinc    987721 Jun  5 23:47 agis_schedconf.cvmfs.json
[2025-06-06 02:05:12] -rw------- 1 boinc boinc   1598969 Jun  5 23:47 agis_ddmendpoints.agis.ALL.json
[2025-06-06 02:05:12] drwx------ 4 boinc boinc      4096 Jun  5 23:47 pilot3
[2025-06-06 02:05:12] -rw------- 1 boinc boinc 179369969 Jun  6 02:04 HITS.45006595._049105.pool.root.1
[2025-06-06 02:05:12] -rw------- 1 boinc boinc        95 Jun  6 02:04 pilot_heartbeat.json
[2025-06-06 02:05:12] -rw------- 1 boinc boinc      1026 Jun  6 02:04 memory_monitor_summary.json
[2025-06-06 02:05:12] -rw-rw-r-- 1 boinc boinc       529 Jun  6 02:04 boinc_task_state.xml
[2025-06-06 02:05:12] -rw------- 1 boinc boinc    380670 Jun  6 02:04 log.45006595._049105.job.log.tgz.1
[2025-06-06 02:05:12] -rw------- 1 boinc boinc      7678 Jun  6 02:04 heartbeat.json
[2025-06-06 02:05:12] -rw-rw-r-- 1 boinc boinc        27 Jun  6 02:04 wrapper_checkpoint.txt
[2025-06-06 02:05:12] -rw-rw-r-- 1 boinc boinc      8192 Jun  6 02:04 boinc_mmap_file
[2025-06-06 02:05:12] -rw------- 1 boinc boinc      4572 Jun  6 02:05 pilotlog.txt
[2025-06-06 02:05:12] -rw------- 1 boinc boinc    802131 Jun  6 02:05 log.45006595._049105.job.log.1
[2025-06-06 02:05:12] -rw------- 1 boinc boinc       357 Jun  6 02:05 output.list
[2025-06-06 02:05:12] -rw-rw-r-- 1 boinc boinc       620 Jun  6 02:05 runtime_log
[2025-06-06 02:05:12] -rw------- 1 boinc boinc   1198080 Jun  6 02:05 result.tar.gz
[2025-06-06 02:05:12] -rw-rw-r-- 1 boinc boinc      8978 Jun  6 02:05 runtime_log.err
[2025-06-06 02:05:12] -rw------- 1 boinc boinc       657 Jun  6 02:05 L6KNDmZKrg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmoNaKDmbdhXln.diag
[2025-06-06 02:05:12] -rw-rw-r-- 1 boinc boinc     21226 Jun  6 02:05 stderr.txt
[2025-06-06 02:05:12] HITS file was successfully produced:
[2025-06-06 02:05:12] -rw------- 1 boinc boinc 179369969 Jun  6 02:04 shared/HITS.pool.root.1
[2025-06-06 02:05:12]  *** Contents of shared directory: ***
[2025-06-06 02:05:12] total 385208
[2025-06-06 02:05:12] -rw-r--r-- 2 boinc boinc 213340469 Jun  5 23:47 ATLAS.root_0
[2025-06-06 02:05:12] -rw-r--r-- 2 boinc boinc    508885 Jun  5 23:47 input.tar.gz
[2025-06-06 02:05:12] -rw-r--r-- 2 boinc boinc     15093 Jun  5 23:47 start_atlas.sh
[2025-06-06 02:05:12] -rw------- 1 boinc boinc 179369969 Jun  6 02:04 HITS.pool.root.1
[2025-06-06 02:05:12] -rw------- 1 boinc boinc   1198080 Jun  6 02:05 result.tar.gz
02:05:14 (660682): run_atlas exited; CPU time 28625.253209
02:05:14 (660682): called boinc_finish(0)

</stderr_txt>
]]>

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