Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:53:40 (27467): wrapper (7.7.26015): starting
15:53:40 (27467): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 15:53:40] Arguments: --nthreads 8
[2025-06-04 15:53:40] Threads: 8
[2025-06-04 15:53:40] Checking for CVMFS
[2025-06-04 15:53:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 15:53:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 15:53:40] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 15:53:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 15:53:41] 2.11.2.0 30615 33271 93060 146781 0 216 13895491 25165825 4178 130560 0 17091459 99.834 18342014 2616 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 15:53:41] CVMFS is ok
[2025-06-04 15:53:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 15:53:41] Checking for apptainer binary...
[2025-06-04 15:53:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 15:53:41] Running /usr/bin/apptainer --version
[2025-06-04 15:53:41] apptainer version 1.3.2-1.el7
[2025-06-04 15:53:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 15:53:43] cg-vwn418.simple-grid.lan
[2025-06-04 15:53:43] apptainer works
[2025-06-04 15:53:43] Set ATHENA_PROC_NUMBER=8
[2025-06-04 15:53:43] Set ATHENA_CORE_NUMBER=8
[2025-06-04 15:53:43] Starting ATLAS job with PandaID=6678218019
[2025-06-04 15:53:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 21:11:24]  *** The last 200 lines of the pilot log: ***
[2025-06-04 21:11:24] 2025-06-04 17:50:31,226 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 21:11:24] 2025-06-04 17:50:31,227 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 21:11:24] 2025-06-04 17:50:31,227 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 21:11:24] 2025-06-04 17:50:31,227 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 21:11:24] 2025-06-04 17:50:31,232 | INFO     | fitting pss+swap vs Time
[2025-06-04 21:11:24] 2025-06-04 17:50:31,233 | INFO     | sum of square deviations: 3438620752.0
[2025-06-04 21:11:24] 2025-06-04 17:50:31,234 | INFO     | sum of deviations: 9495727381.999994
[2025-06-04 21:11:24] 2025-06-04 17:50:31,235 | INFO     | mean x: 1749052563.0
[2025-06-04 21:11:24] 2025-06-04 17:50:31,235 | INFO     | mean y: 2452412.807174888
[2025-06-04 21:11:24] 2025-06-04 17:50:31,235 | INFO     | -- intersect: -4827544121.52316
[2025-06-04 21:11:24] 2025-06-04 17:50:31,235 | INFO     | intersect: -4827544121.52316
[2025-06-04 21:11:24] 2025-06-04 17:50:31,235 | INFO     | chi2: 4.959609558346784
[2025-06-04 21:11:24] 2025-06-04 17:50:31,236 | INFO     | sum of square deviations: 3212467674.5
[2025-06-04 21:11:24] 2025-06-04 17:50:31,237 | INFO     | sum of deviations: 38810313161.99999
[2025-06-04 21:11:24] 2025-06-04 17:50:31,238 | INFO     | mean x: 1749052410.5
[2025-06-04 21:11:24] 2025-06-04 17:50:31,238 | INFO     | mean y: 2471907.4862385322
[2025-06-04 21:11:24] 2025-06-04 17:50:31,238 | INFO     | -- intersect: -21128097693.909435
[2025-06-04 21:11:24] 2025-06-04 17:50:31,238 | INFO     | intersect: -21128097693.909435
[2025-06-04 21:11:24] 2025-06-04 17:50:31,238 | INFO     | chi2: 3.3944450911205792
[2025-06-04 21:11:24] 2025-06-04 17:50:31,238 | INFO     | current chi2=3.3944450911205792 (change=31.558219428626366 %)
[2025-06-04 21:11:24] 2025-06-04 17:50:31,239 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 21:11:24] 2025-06-04 17:50:31,240 | INFO     | sum of deviations: 37813068570.0
[2025-06-04 21:11:24] 2025-06-04 17:50:31,241 | INFO     | mean x: 1749052258.0
[2025-06-04 21:11:24] 2025-06-04 17:50:31,241 | INFO     | mean y: 2471203.3380281692
[2025-06-04 21:11:24] 2025-06-04 17:50:31,241 | INFO     | -- intersect: -22069292907.560818
[2025-06-04 21:11:24] 2025-06-04 17:50:31,247 | INFO     | intersect: -22069292907.560818
[2025-06-04 21:11:24] 2025-06-04 17:50:31,248 | INFO     | chi2: 3.398362775024763
[2025-06-04 21:11:24] 2025-06-04 17:50:31,248 | INFO     | current chi2=3.398362775024763 (change=-0.11541456111433482 %)
[2025-06-04 21:11:24] 2025-06-04 17:50:31,248 | INFO     | right removable region: 212
[2025-06-04 21:11:24] 2025-06-04 17:50:31,249 | INFO     | sum of square deviations: 3212467674.5
[2025-06-04 21:11:24] 2025-06-04 17:50:31,250 | INFO     | sum of deviations: -50396227016.00002
[2025-06-04 21:11:24] 2025-06-04 17:50:31,250 | INFO     | mean x: 1749052715.5
[2025-06-04 21:11:24] 2025-06-04 17:50:31,251 | INFO     | mean y: 2492616.770642202
[2025-06-04 21:11:24] 2025-06-04 17:50:31,251 | INFO     | -- intersect: 27441105746.78715
[2025-06-04 21:11:24] 2025-06-04 17:50:31,251 | INFO     | intersect: 27441105746.78715
[2025-06-04 21:11:24] 2025-06-04 17:50:31,251 | INFO     | chi2: 1.8828520292378688
[2025-06-04 21:11:24] 2025-06-04 17:50:31,251 | INFO     | current chi2=1.8828520292378688 (change=62.036285173514926 %)
[2025-06-04 21:11:24] 2025-06-04 17:50:31,252 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 21:11:24] 2025-06-04 17:50:31,253 | INFO     | sum of deviations: -55057457653.0
[2025-06-04 21:11:24] 2025-06-04 17:50:31,254 | INFO     | mean x: 1749052868.0
[2025-06-04 21:11:24] 2025-06-04 17:50:31,254 | INFO     | mean y: 2495842.9906103285
[2025-06-04 21:11:24] 2025-06-04 17:50:31,254 | INFO     | -- intersect: 32139946931.680424
[2025-06-04 21:11:24] 2025-06-04 17:50:31,254 | INFO     | intersect: 32139946931.680424
[2025-06-04 21:11:24] 2025-06-04 17:50:31,254 | INFO     | chi2: 1.8138151797115663
[2025-06-04 21:11:24] 2025-06-04 17:50:31,254 | INFO     | current chi2=1.8138151797115663 (change=3.6666104640334853 %)
[2025-06-04 21:11:24] 2025-06-04 17:50:31,255 | INFO     | left removable region: 20
[2025-06-04 21:11:24] 2025-06-04 17:50:31,255 | INFO     | sum of square deviations: 2194675568.0
[2025-06-04 21:11:24] 2025-06-04 17:50:31,256 | INFO     | sum of deviations: -11946135934.000002
[2025-06-04 21:11:24] 2025-06-04 17:50:31,256 | INFO     | mean x: 1749052837.5
[2025-06-04 21:11:24] 2025-06-04 17:50:31,256 | INFO     | mean y: 2506684.1666666665
[2025-06-04 21:11:24] 2025-06-04 17:50:31,257 | INFO     | -- intersect: 9523013157.733704
[2025-06-04 21:11:24] 2025-06-04 17:50:31,257 | INFO     | intersect: 9523013157.733704
[2025-06-04 21:11:24] 2025-06-04 17:50:31,257 | INFO     | chi2: 0.10985635408928254
[2025-06-04 21:11:24] 2025-06-04 17:50:31,257 | INFO     | -- intersect: 9523013157.733704
[2025-06-04 21:11:24] 2025-06-04 17:50:31,257 | INFO     | current memory leak: -5.44 B/s (using 192 data points, chi2=0.11)
[2025-06-04 21:11:24] 2025-06-04 17:50:31,266 | INFO     | ..............................
[2025-06-04 21:11:24] 2025-06-04 17:50:31,267 | INFO     | . Timing measurements:
[2025-06-04 21:11:24] 2025-06-04 17:50:31,267 | INFO     | . get job = 0 s
[2025-06-04 21:11:24] 2025-06-04 17:50:31,267 | INFO     | . initial setup = 3 s
[2025-06-04 21:11:24] 2025-06-04 17:50:31,267 | INFO     | . payload setup = 166 s
[2025-06-04 21:11:24] 2025-06-04 17:50:31,267 | INFO     | . stage-in = 0 s
[2025-06-04 21:11:24] 2025-06-04 17:50:31,267 | INFO     | . payload execution = 13696 s
[2025-06-04 21:11:24] 2025-06-04 17:50:31,267 | INFO     | . stage-out = 3 s
[2025-06-04 21:11:24] 2025-06-04 17:50:31,267 | INFO     | . log creation = 1 s
[2025-06-04 21:11:24] 2025-06-04 17:50:31,267 | INFO     | ..............................
[2025-06-04 21:11:24] 2025-06-04 17:50:31,438 | INFO     | 
[2025-06-04 21:11:24] 2025-06-04 17:50:31,439 | INFO     | job summary report
[2025-06-04 21:11:24] 2025-06-04 17:50:31,439 | INFO     | --------------------------------------------------
[2025-06-04 21:11:24] 2025-06-04 17:50:31,439 | INFO     | PanDA job id: 6678218019
[2025-06-04 21:11:24] 2025-06-04 17:50:31,439 | INFO     | task id: 45006595
[2025-06-04 21:11:24] 2025-06-04 17:50:31,439 | INFO     | errors: (none)
[2025-06-04 21:11:24] 2025-06-04 17:50:31,439 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 21:11:24] 2025-06-04 17:50:31,439 | INFO     | pilot state: finished 
[2025-06-04 21:11:24] 2025-06-04 17:50:31,439 | INFO     | transexitcode: 0
[2025-06-04 21:11:24] 2025-06-04 17:50:31,439 | INFO     | exeerrorcode: 0
[2025-06-04 21:11:24] 2025-06-04 17:50:31,440 | INFO     | exeerrordiag: 
[2025-06-04 21:11:24] 2025-06-04 17:50:31,440 | INFO     | exitcode: 0
[2025-06-04 21:11:24] 2025-06-04 17:50:31,440 | INFO     | exitmsg: OK
[2025-06-04 21:11:24] 2025-06-04 17:50:31,440 | INFO     | cpuconsumptiontime: 50507 s
[2025-06-04 21:11:24] 2025-06-04 17:50:31,440 | INFO     | nevents: 400
[2025-06-04 21:11:24] 2025-06-04 17:50:31,440 | INFO     | neventsw: 0
[2025-06-04 21:11:24] 2025-06-04 17:50:31,440 | INFO     | pid: 12205
[2025-06-04 21:11:24] 2025-06-04 17:50:31,440 | INFO     | pgrp: 12205
[2025-06-04 21:11:24] 2025-06-04 17:50:31,440 | INFO     | corecount: 8
[2025-06-04 21:11:24] 2025-06-04 17:50:31,440 | INFO     | event service: False
[2025-06-04 21:11:24] 2025-06-04 17:50:31,440 | INFO     | sizes: {0: 2397115, 1: 2397370, 12: 2397370, 23: 2397398, 34: 2397426, 44: 2397454, 55: 2397610, 66: 2397638, 76: 2397666, 87: 2360941, 88: 2397956, 98: 2398264, 1
[2025-06-04 21:11:24] 2025-06-04 17:50:31,441 | INFO     | --------------------------------------------------
[2025-06-04 21:11:24] 2025-06-04 17:50:31,441 | INFO     | 
[2025-06-04 21:11:24] 2025-06-04 17:50:31,441 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-04 21:11:24] 2025-06-04 17:50:31,467 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,468 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,468 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,468 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,468 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,468 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,468 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,468 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,468 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,468 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,469 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,469 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,469 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,469 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,469 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,469 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,469 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,469 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 21:11:24] 2025-06-04 17:50:31,469 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,469 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 21:11:24] 2025-06-04 17:50:31,469 | INFO     | job 6678218019 has completed (purged errors)
[2025-06-04 21:11:24] 2025-06-04 17:50:31,470 | INFO     | overall cleanup function is called
[2025-06-04 21:11:24] 2025-06-04 17:50:32,479 | INFO     | --- collectZombieJob: --- 10, [12205]
[2025-06-04 21:11:24] 2025-06-04 17:50:32,479 | INFO     | zombie collector waiting for pid 12205
[2025-06-04 21:11:24] 2025-06-04 17:50:32,480 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 21:11:24] 2025-06-04 17:50:32,480 | INFO     | collected zombie processes
[2025-06-04 21:11:24] 2025-06-04 17:50:32,480 | INFO     | will attempt to kill all subprocesses of pid=12205
[2025-06-04 21:11:24] 2025-06-04 17:50:32,613 | INFO     | process IDs to be killed: [12205] (in reverse order)
[2025-06-04 21:11:24] 2025-06-04 17:50:33,425 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 21:11:24] 2025-06-04 17:50:33,425 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 21:11:24] 2025-06-04 17:50:33,429 | INFO     | did not find any defunct processes belonging to 12205
[2025-06-04 21:11:24] 2025-06-04 17:50:33,441 | INFO     | did not find any defunct processes belonging to 12205
[2025-06-04 21:11:24] 2025-06-04 17:50:33,441 | INFO     | ready for new job
[2025-06-04 21:11:24] 2025-06-04 17:50:33,441 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 21:11:24] 2025-06-04 17:50:33,443 | INFO     | **************************************
[2025-06-04 21:11:24] 2025-06-04 17:50:33,443 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 21:11:24] 2025-06-04 17:50:33,444 | INFO     | **************************************
[2025-06-04 21:11:24] 2025-06-04 17:50:33,444 | INFO     | 
[2025-06-04 21:11:24] 2025-06-04 17:50:33,444 | INFO     | pilot is running in a VM
[2025-06-04 21:11:24] 2025-06-04 17:50:33,444 | INFO     | architecture information:
[2025-06-04 21:11:24] 2025-06-04 17:50:33,445 | INFO     | executing command: cat /etc/os-release
[2025-06-04 21:11:24] 2025-06-04 17:50:33,662 | INFO     | cat /etc/os-release:
[2025-06-04 21:11:24] NAME="CentOS Linux"
[2025-06-04 21:11:24] VERSION="7 (Core)"
[2025-06-04 21:11:24] ID="centos"
[2025-06-04 21:11:24] ID_LIKE="rhel fedora"
[2025-06-04 21:11:24] VERSION_ID="7"
[2025-06-04 21:11:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 21:11:24] ANSI_COLOR="0;31"
[2025-06-04 21:11:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 21:11:24] HOME_URL="https://www.centos.org/"
[2025-06-04 21:11:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 21:11:24] 
[2025-06-04 21:11:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 21:11:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 21:11:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 21:11:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 21:11:24] 
[2025-06-04 21:11:24] 2025-06-04 17:50:33,662 | INFO     | **************************************
[2025-06-04 21:11:24] 2025-06-04 17:50:34,166 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-04 21:11:24] 2025-06-04 17:50:34,372 | INFO     | sufficient remaining disk space (496577282048 B)
[2025-06-04 21:11:24] 2025-06-04 17:50:34,372 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 21:11:24] 2025-06-04 17:50:34,373 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 21:11:24] 2025-06-04 17:50:34,373 | INFO     | update_server=False
[2025-06-04 21:11:24] 2025-06-04 17:50:34,373 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 21:11:24] 2025-06-04 17:50:34,373 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:11:24] 2025-06-04 17:50:34,374 | INFO     | aborting loop
[2025-06-04 21:11:24] 2025-06-04 17:50:34,374 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 21:11:24] 2025-06-04 17:50:34,375 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 21:11:24] 2025-06-04 17:50:34,375 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 21:11:24] 2025-06-04 17:50:34,375 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 21:11:24] 2025-06-04 17:50:34,377 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 21:11:24] 2025-06-04 17:50:34,480 | INFO     | all job control threads have been joined
[2025-06-04 21:11:24] 2025-06-04 17:50:34,699 | INFO     | all data control threads have been joined
[2025-06-04 21:11:24] 2025-06-04 17:50:34,730 | INFO     | all payload control threads have been joined
[2025-06-04 21:11:24] 2025-06-04 17:50:35,164 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 21:11:24] 2025-06-04 17:50:35,378 | INFO     | [job] retrieve thread has finished
[2025-06-04 21:11:24] 2025-06-04 17:50:35,379 | INFO     | [job] job monitor thread has finished
[2025-06-04 21:11:24] 2025-06-04 17:50:35,486 | INFO     | [job] control thread has finished
[2025-06-04 21:11:24] 2025-06-04 17:50:35,705 | INFO     | [data] control thread has finished
[2025-06-04 21:11:24] 2025-06-04 17:50:35,736 | INFO     | [payload] control thread has finished
[2025-06-04 21:11:24] 2025-06-04 17:50:35,748 | INFO     | [payload] validate_post thread has finished
[2025-06-04 21:11:24] 2025-06-04 17:50:36,256 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 21:11:24] 2025-06-04 17:50:36,273 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 21:11:24] 2025-06-04 17:50:36,384 | INFO     | [data] copytool_out thread has finished
[2025-06-04 21:11:24] 2025-06-04 17:50:36,400 | INFO     | [payload] failed_post thread has finished
[2025-06-04 21:11:24] 2025-06-04 17:50:36,453 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:11:24] 2025-06-04 17:50:36,765 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 21:11:24] 2025-06-04 17:50:36,781 | INFO     | [data] copytool_in thread has finished
[2025-06-04 21:11:24] 2025-06-04 17:50:36,866 | INFO     | [job] validate thread has finished
[2025-06-04 21:11:24] 2025-06-04 17:50:37,459 | INFO     | [job] queue monitor thread has finished
[2025-06-04 21:11:24] 2025-06-04 17:50:39,173 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 21:11:24] 2025-06-04 17:50:45,097 | INFO     | job.realtimelogging is not enabled
[2025-06-04 21:11:24] 2025-06-04 17:50:46,103 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 21:11:24] 2025-06-04 17:50:46,558 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139775099586368)>', '<ExcThread(monitor, started 139774140610304)>']
[2025-06-04 21:11:24] 2025-06-04 17:50:47,451 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 21:11:24] 2025-06-04 17:50:47,451 | INFO     | [monitor] control thread has ended
[2025-06-04 21:11:24] 2025-06-04 17:50:51,585 | INFO     | all workflow threads have been joined
[2025-06-04 21:11:24] 2025-06-04 17:50:51,585 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 21:11:24] 2025-06-04 17:50:51,586 | INFO     | traces error code: 0
[2025-06-04 21:11:24] 2025-06-04 17:50:51,586 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 21:11:24] 2025-06-04 17:50:51,930 [wrapper] ==== pilot stdout END ====
[2025-06-04 21:11:24] 2025-06-04 17:50:52,055 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 21:11:24] 2025-06-04 17:50:52,143 [wrapper] pilotpid: 32006
[2025-06-04 21:11:24] 2025-06-04 17:50:52,190 [wrapper] Pilot exit status: 0
[2025-06-04 21:11:24] 2025-06-04 17:50:52,664 [wrapper] pandaids: 6678218019
[2025-06-04 21:11:24] 2025-06-04 17:50:53,255 [wrapper] cleanup supervisor_pilot 20192 32007
[2025-06-04 21:11:24] 2025-06-04 17:50:53,360 [wrapper] Test setup, not cleaning
[2025-06-04 21:11:24] 2025-06-04 17:50:53,410 [wrapper] apfmon messages muted
[2025-06-04 21:11:24] 2025-06-04 17:50:53,498 [wrapper] ==== wrapper stdout END ====
[2025-06-04 21:11:24] 2025-06-04 17:50:53,552 [wrapper] ==== wrapper stderr END ====
[2025-06-04 21:11:24]  *** Error codes and diagnostics ***
[2025-06-04 21:11:24]     "exeErrorCode": 0,
[2025-06-04 21:11:24]     "exeErrorDiag": "",
[2025-06-04 21:11:24]     "pilotErrorCode": 0,
[2025-06-04 21:11:24]     "pilotErrorDiag": "",
[2025-06-04 21:11:24]  *** Listing of results directory ***
[2025-06-04 21:11:24] total 393048
[2025-06-04 21:11:24] -rw-r--r--. 1 boinc boinc    495897 Jun  4 01:58 pilot3.tar.gz
[2025-06-04 21:11:24] -rwx------. 1 boinc boinc     37140 Jun  4 02:46 runpilot2-wrapper.sh
[2025-06-04 21:11:24] -rw-r--r--. 1 boinc boinc      5111 Jun  4 02:46 queuedata.json
[2025-06-04 21:11:24] -rw-r--r--. 1 boinc boinc       100 Jun  4 15:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 21:11:24] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 15:53 run_atlas
[2025-06-04 21:11:24] -rw-r--r--. 1 boinc boinc       105 Jun  4 15:53 job.xml
[2025-06-04 21:11:24] -rw-r--r--. 2 boinc boinc 214574550 Jun  4 15:53 EVNT.45006593._001973.pool.root.1
[2025-06-04 21:11:24] -rw-r--r--. 1 boinc boinc      6392 Jun  4 15:53 init_data.xml
[2025-06-04 21:11:24] -rw-r--r--. 2 boinc boinc     15093 Jun  4 15:53 start_atlas.sh
[2025-06-04 21:11:24] drwxrwx--x. 2 boinc boinc        68 Jun  4 15:53 shared
[2025-06-04 21:11:24] -rw-r--r--. 2 boinc boinc    508881 Jun  4 15:53 input.tar.gz
[2025-06-04 21:11:24] -rw-r--r--. 1 boinc boinc         0 Jun  4 15:53 boinc_lockfile
[2025-06-04 21:11:24] -rw-r--r--. 1 boinc boinc      2525 Jun  4 15:53 pandaJob.out
[2025-06-04 21:11:24] -rw-------. 1 boinc boinc    986819 Jun  4 15:54 agis_schedconf.cvmfs.json
[2025-06-04 21:11:24] drwx------. 4 boinc boinc      4096 Jun  4 15:54 pilot3
[2025-06-04 21:11:24] -rw-------. 1 boinc boinc 180883993 Jun  4 19:47 HITS.45006595._049200.pool.root.1
[2025-06-04 21:11:24] -rw-r--r--. 1 boinc boinc       531 Jun  4 19:48 boinc_task_state.xml
[2025-06-04 21:11:24] -rw-------. 1 boinc boinc      1020 Jun  4 19:48 memory_monitor_summary.json
[2025-06-04 21:11:24] -rw-------. 1 boinc boinc   1598969 Jun  4 19:49 agis_ddmendpoints.agis.ALL.json
[2025-06-04 21:11:24] -rw-------. 1 boinc boinc    394250 Jun  4 19:49 log.45006595._049200.job.log.tgz.1
[2025-06-04 21:11:24] -rw-------. 1 boinc boinc        95 Jun  4 19:50 pilot_heartbeat.json
[2025-06-04 21:11:24] -rw-------. 1 boinc boinc      7691 Jun  4 19:50 heartbeat.json
[2025-06-04 21:11:24] -rw-------. 1 boinc boinc      4611 Jun  4 19:50 pilotlog.txt
[2025-06-04 21:11:24] -rw-------. 1 boinc boinc   1208366 Jun  4 19:50 log.45006595._049200.job.log.1
[2025-06-04 21:11:24] -rw-------. 1 boinc boinc       357 Jun  4 19:50 output.list
[2025-06-04 21:11:24] -rw-r--r--. 1 boinc boinc       620 Jun  4 19:50 runtime_log
[2025-06-04 21:11:24] -rw-------. 1 boinc boinc   1617920 Jun  4 19:50 result.tar.gz
[2025-06-04 21:11:24] -rw-------. 1 boinc boinc       656 Jun  4 19:50 VM2LDmWSrg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNgmKDm5zFWDo.diag
[2025-06-04 21:11:24] -rw-r--r--. 1 boinc boinc      8659 Jun  4 19:50 runtime_log.err
[2025-06-04 21:11:24] -rw-r--r--. 1 boinc boinc      8192 Jun  4 21:11 boinc_mmap_file
[2025-06-04 21:11:24] -rw-r--r--. 1 boinc boinc        28 Jun  4 21:11 wrapper_checkpoint.txt
[2025-06-04 21:11:24] -rw-r--r--. 1 boinc boinc     20513 Jun  4 21:11 stderr.txt
[2025-06-04 21:11:25] HITS file was successfully produced:
[2025-06-04 21:11:25] -rw-------. 1 boinc boinc 180883993 Jun  4 19:47 shared/HITS.pool.root.1
[2025-06-04 21:11:25]  *** Contents of shared directory: ***
[2025-06-04 21:11:25] total 388292
[2025-06-04 21:11:25] -rw-r--r--. 2 boinc boinc 214574550 Jun  4 15:53 ATLAS.root_0
[2025-06-04 21:11:25] -rw-r--r--. 2 boinc boinc     15093 Jun  4 15:53 start_atlas.sh
[2025-06-04 21:11:25] -rw-r--r--. 2 boinc boinc    508881 Jun  4 15:53 input.tar.gz
[2025-06-04 21:11:25] -rw-------. 1 boinc boinc 180883993 Jun  4 19:47 HITS.pool.root.1
[2025-06-04 21:11:25] -rw-------. 1 boinc boinc   1617920 Jun  4 19:50 result.tar.gz
21:11:26 (27467): run_atlas exited; CPU time 50706.154440
21:11:26 (27467): called boinc_finish(0)

</stderr_txt>
]]>

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